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feat: ignore messages containing 'histologie_zytologie'

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Paul-Christian Volkmer 2024-05-21 16:11:54 +02:00
parent 8ec24efc96
commit ab15e5c9ff
2 changed files with 12 additions and 10 deletions
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13
src/resources/export.sql
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@ -29,14 +29,15 @@ FROM (
EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID') AS pid, EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID') AS pid,
lme.versionsnummer, lme.versionsnummer,
SHA2(CONCAT('https://fhir.diz.uk-erlangen.de/identifiers/onkostar-xml-condition-id|', EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID'), 'condition', EXTRACTVALUE(lme.xml_daten, '//Diagnose/@Tumor_ID')), 256) AS cond_id, SHA2(CONCAT('https://fhir.diz.uk-erlangen.de/identifiers/onkostar-xml-condition-id|', EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID'), 'condition', EXTRACTVALUE(lme.xml_daten, '//Diagnose/@Tumor_ID')), 256) AS cond_id,
SUBSTRING_INDEX(EXTRACTVALUE(lme.xml_daten, '//Primaertumor_ICD_Code'), ' ', 1) AS condcodingcode, SUBSTRING_INDEX(EXTRACTVALUE(lm.xml_daten, '//Primaertumor_ICD_Code'), ' ', 1) AS condcodingcode,
SUBSTRING_INDEX(EXTRACTVALUE(lme.xml_daten, '//Diagnosedatum'), ' ', 1) AS diagnosedatum, SUBSTRING_INDEX(EXTRACTVALUE(lm.xml_daten, '//Diagnosedatum'), ' ', 1) AS diagnosedatum,
SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lme.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) AS diagnosejahr SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lm.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) AS diagnosejahr
FROM lkr_meldung_export lme FROM lkr_meldung_export lme
JOIN lkr_meldung lm ON (lm.id = lme.lkr_meldung AND lme.typ <> '-1' AND lm.extern <= :include_extern) JOIN lkr_meldung lm ON (lm.id = lme.lkr_meldung AND lme.typ <> '-1' AND lm.extern <= :include_extern)
WHERE lme.xml_daten LIKE '%ICD_Version%' WHERE lm.xml_daten LIKE '%ICD_Version%'
AND SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lme.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) = :year AND SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lm.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) = :year
AND (lme.xml_daten LIKE '%<cTNM%' OR lme.xml_daten LIKE '%<pTNM%' OR lme.xml_daten LIKE '%<Menge_Histologie>%' OR lme.xml_daten LIKE '%<Menge_Weitere_Klassifikation>%') AND (lm.xml_daten LIKE '%<cTNM%' OR lm.xml_daten LIKE '%<pTNM%' OR lm.xml_daten LIKE '%<Menge_Histologie>%' OR lm.xml_daten LIKE '%<Menge_Weitere_Klassifikation>%')
AND (lm.xml_daten NOT LIKE '%histologie_zytologie%')
) o1 ) o1
LEFT OUTER JOIN ( LEFT OUTER JOIN (

9
src/resources/query.sql
View File

@ -115,13 +115,14 @@ FROM (
EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID') AS pid, EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID') AS pid,
lme.versionsnummer, lme.versionsnummer,
SHA2(CONCAT('https://fhir.diz.uk-erlangen.de/identifiers/onkostar-xml-condition-id|', EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID'), 'condition', EXTRACTVALUE(lme.xml_daten, '//Diagnose/@Tumor_ID')), 256) AS cond_id, SHA2(CONCAT('https://fhir.diz.uk-erlangen.de/identifiers/onkostar-xml-condition-id|', EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID'), 'condition', EXTRACTVALUE(lme.xml_daten, '//Diagnose/@Tumor_ID')), 256) AS cond_id,
SUBSTRING_INDEX(EXTRACTVALUE(lme.xml_daten, '//Primaertumor_ICD_Code'), ' ', 1) AS condcodingcode, SUBSTRING_INDEX(EXTRACTVALUE(lm.xml_daten, '//Primaertumor_ICD_Code'), ' ', 1) AS condcodingcode,
SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lme.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) AS diagnosejahr SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lm.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) AS diagnosejahr
FROM lkr_meldung_export lme FROM lkr_meldung_export lme
JOIN lkr_meldung lm ON (lm.id = lme.lkr_meldung AND lme.typ <> '-1' AND lm.extern <= :include_extern) JOIN lkr_meldung lm ON (lm.id = lme.lkr_meldung AND lme.typ <> '-1' AND lm.extern <= :include_extern)
WHERE lme.xml_daten LIKE '%ICD_Version%' WHERE lme.xml_daten LIKE '%ICD_Version%'
AND SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lme.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) = :year AND SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lm.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) = :year
AND (lme.xml_daten LIKE '%<cTNM%' OR lme.xml_daten LIKE '%<pTNM%' OR lme.xml_daten LIKE '%<Menge_Histologie>%' OR lme.xml_daten LIKE '%<Menge_Weitere_Klassifikation>%') AND (lm.xml_daten LIKE '%<cTNM%' OR lm.xml_daten LIKE '%<pTNM%' OR lm.xml_daten LIKE '%<Menge_Histologie>%' OR lm.xml_daten LIKE '%<Menge_Weitere_Klassifikation>%')
AND (lm.xml_daten NOT LIKE '%histologie_zytologie%')
) o1 ) o1
LEFT OUTER JOIN ( LEFT OUTER JOIN (