mirror of
https://github.com/pcvolkmer/etl-processor.git
synced 2025-07-01 22:22:53 +00:00
Initial commit
This commit is contained in:
@ -0,0 +1,26 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor.pseudonym;
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||||
|
||||
public interface Generator {
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||||
|
||||
String generate(String id);
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||||
|
||||
}
|
@ -0,0 +1,41 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor.pseudonym;
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import java.net.URI;
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public class GpasPseudonymGenerator implements Generator {
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private final URI uri;
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||||
private final String target;
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||||
|
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public GpasPseudonymGenerator(URI uri, String target) {
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this.uri = uri;
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this.target = target;
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||||
}
|
||||
|
||||
@Override
|
||||
public String generate(String id) {
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||||
// TODO Implement this
|
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return "?";
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||||
}
|
||||
|
||||
}
|
@ -0,0 +1,31 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor
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|
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import org.springframework.boot.autoconfigure.SpringBootApplication
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import org.springframework.boot.runApplication
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|
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@SpringBootApplication
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class EtlProcessorApplication
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fun main(args: Array<String>) {
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runApplication<EtlProcessorApplication>(*args)
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}
|
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|
31
src/main/kotlin/dev/dnpm/etl/processor/ServletInitializer.kt
Normal file
31
src/main/kotlin/dev/dnpm/etl/processor/ServletInitializer.kt
Normal file
@ -0,0 +1,31 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor
|
||||
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import org.springframework.boot.builder.SpringApplicationBuilder
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||||
import org.springframework.boot.web.servlet.support.SpringBootServletInitializer
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||||
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||||
class ServletInitializer : SpringBootServletInitializer() {
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||||
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||||
override fun configure(application: SpringApplicationBuilder): SpringApplicationBuilder {
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||||
return application.sources(EtlProcessorApplication::class.java)
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||||
}
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||||
|
||||
}
|
@ -0,0 +1,77 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor.config
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||||
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||||
import org.springframework.boot.context.properties.ConfigurationProperties
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import java.net.URI
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import java.net.URL
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@ConfigurationProperties(AppConfigProperties.NAME)
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data class AppConfigProperties(
|
||||
var bwhc_uri: String?,
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var pseudonymizer: Pseudonymizer = Pseudonymizer.BUILDIN
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||||
) {
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||||
companion object {
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const val NAME = "app"
|
||||
}
|
||||
}
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||||
|
||||
@ConfigurationProperties(PseudonymizeConfigProperties.NAME)
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||||
data class PseudonymizeConfigProperties(
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||||
val prefix: String = "UNKNOWN",
|
||||
) {
|
||||
companion object {
|
||||
const val NAME = "app.pseudonymize"
|
||||
}
|
||||
}
|
||||
|
||||
@ConfigurationProperties(GPasConfigProperties.NAME)
|
||||
data class GPasConfigProperties(
|
||||
val uri: String?,
|
||||
val target: String = "etl-processor"
|
||||
) {
|
||||
companion object {
|
||||
const val NAME = "app.pseudonymize.gpas"
|
||||
}
|
||||
}
|
||||
|
||||
@ConfigurationProperties(RestTargetProperties.NAME)
|
||||
data class RestTargetProperties(
|
||||
val uri: String?,
|
||||
) {
|
||||
companion object {
|
||||
const val NAME = "app.rest"
|
||||
}
|
||||
}
|
||||
|
||||
@ConfigurationProperties(KafkaTargetProperties.NAME)
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||||
data class KafkaTargetProperties(
|
||||
val topic: String = "etl-processor",
|
||||
val servers: String = ""
|
||||
) {
|
||||
companion object {
|
||||
const val NAME = "app.kafka"
|
||||
}
|
||||
}
|
||||
|
||||
enum class Pseudonymizer {
|
||||
BUILDIN,
|
||||
GPAS
|
||||
}
|
@ -0,0 +1,82 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor.config
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper
|
||||
import dev.dnpm.etl.processor.output.KafkaMtbFileSender
|
||||
import dev.dnpm.etl.processor.output.MtbFileSender
|
||||
import dev.dnpm.etl.processor.output.RestMtbFileSender
|
||||
import dev.dnpm.etl.processor.pseudonym.AnonymizingGenerator
|
||||
import dev.dnpm.etl.processor.pseudonym.Generator
|
||||
import dev.dnpm.etl.processor.pseudonym.GpasPseudonymGenerator
|
||||
import dev.dnpm.etl.processor.pseudonym.PseudonymizeService
|
||||
import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty
|
||||
import org.springframework.boot.context.properties.EnableConfigurationProperties
|
||||
import org.springframework.context.annotation.Bean
|
||||
import org.springframework.context.annotation.Configuration
|
||||
import org.springframework.kafka.core.KafkaTemplate
|
||||
import java.net.URI
|
||||
|
||||
@Configuration
|
||||
@EnableConfigurationProperties(
|
||||
value = [
|
||||
AppConfigProperties::class,
|
||||
PseudonymizeConfigProperties::class,
|
||||
GPasConfigProperties::class,
|
||||
RestTargetProperties::class,
|
||||
KafkaTargetProperties::class
|
||||
]
|
||||
)
|
||||
class AppConfiguration {
|
||||
|
||||
@ConditionalOnProperty(value = ["app.pseudonymizer"], havingValue = "GPAS")
|
||||
@Bean
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||||
fun gpasPseudonymGenerator(configProperties: GPasConfigProperties): Generator {
|
||||
return GpasPseudonymGenerator(URI.create(configProperties.uri!!), configProperties.target)
|
||||
}
|
||||
|
||||
@ConditionalOnProperty(value = ["app.pseudonymizer"], havingValue = "BUILDIN", matchIfMissing = true)
|
||||
@Bean
|
||||
fun buildinPseudonymGenerator(): Generator {
|
||||
return AnonymizingGenerator()
|
||||
}
|
||||
|
||||
@Bean
|
||||
fun pseudonymizeService(generator: Generator, pseudonymizeConfigProperties: PseudonymizeConfigProperties): PseudonymizeService {
|
||||
return PseudonymizeService(generator, pseudonymizeConfigProperties)
|
||||
}
|
||||
|
||||
@ConditionalOnProperty(value = ["app.rest.uri"])
|
||||
@Bean
|
||||
fun restMtbFileSender(restTargetProperties: RestTargetProperties): MtbFileSender {
|
||||
return RestMtbFileSender(restTargetProperties)
|
||||
}
|
||||
|
||||
@ConditionalOnProperty(value = ["app.kafka.topic", "app.kafka.servers"])
|
||||
@Bean
|
||||
fun kafkaMtbFileSender(
|
||||
kafkaTemplate: KafkaTemplate<String, String>,
|
||||
objectMapper: ObjectMapper
|
||||
): MtbFileSender {
|
||||
return KafkaMtbFileSender(kafkaTemplate, objectMapper)
|
||||
}
|
||||
|
||||
}
|
||||
|
@ -0,0 +1,46 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor.output
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper
|
||||
import de.ukw.ccc.bwhc.dto.MtbFile
|
||||
import dev.dnpm.etl.processor.config.KafkaTargetProperties
|
||||
import org.slf4j.LoggerFactory
|
||||
import org.springframework.kafka.core.KafkaTemplate
|
||||
|
||||
class KafkaMtbFileSender(
|
||||
private val kafkaTemplate: KafkaTemplate<String, String>,
|
||||
private val objectMapper: ObjectMapper
|
||||
) : MtbFileSender {
|
||||
|
||||
private val logger = LoggerFactory.getLogger(KafkaMtbFileSender::class.java)
|
||||
|
||||
override fun send(mtbFile: MtbFile): Boolean {
|
||||
return try {
|
||||
kafkaTemplate.sendDefault(objectMapper.writeValueAsString(mtbFile))
|
||||
logger.debug("Sent file via KafkaMtbFileSender")
|
||||
true
|
||||
} catch (e: Exception) {
|
||||
logger.error("An error occured sending to kafka", e)
|
||||
false
|
||||
}
|
||||
}
|
||||
|
||||
}
|
@ -0,0 +1,28 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor.output
|
||||
|
||||
import de.ukw.ccc.bwhc.dto.MtbFile
|
||||
|
||||
interface MtbFileSender {
|
||||
|
||||
fun send(mtbFile: MtbFile): Boolean
|
||||
|
||||
}
|
@ -0,0 +1,62 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor.output
|
||||
|
||||
import de.ukw.ccc.bwhc.dto.MtbFile
|
||||
import dev.dnpm.etl.processor.config.RestTargetProperties
|
||||
import org.slf4j.LoggerFactory
|
||||
import org.springframework.http.HttpEntity
|
||||
import org.springframework.http.HttpHeaders
|
||||
import org.springframework.http.MediaType
|
||||
import org.springframework.web.client.RestClientException
|
||||
import org.springframework.web.client.RestTemplate
|
||||
|
||||
class RestMtbFileSender(private val restTargetProperties: RestTargetProperties) : MtbFileSender {
|
||||
|
||||
private val logger = LoggerFactory.getLogger(RestMtbFileSender::class.java)
|
||||
|
||||
private val restTemplate = RestTemplate()
|
||||
|
||||
override fun send(mtbFile: MtbFile): Boolean {
|
||||
try {
|
||||
val headers = HttpHeaders()
|
||||
headers.contentType = MediaType.APPLICATION_JSON
|
||||
val entityReq = HttpEntity(mtbFile, headers)
|
||||
val response = restTemplate.postForEntity(
|
||||
restTargetProperties.uri!!,
|
||||
entityReq,
|
||||
String::class.java
|
||||
)
|
||||
if (!response.statusCode.is2xxSuccessful) {
|
||||
logger.warn("Error sending to remote system: {}", response.body)
|
||||
return false
|
||||
}
|
||||
logger.debug("Sent file via RestMtbFileSender")
|
||||
return true
|
||||
} catch (e: IllegalArgumentException) {
|
||||
logger.error("Not a valid URI to export to: '{}'", restTargetProperties.uri!!)
|
||||
} catch (e: RestClientException) {
|
||||
logger.info(restTargetProperties.uri!!.toString())
|
||||
logger.error("Cannot send data to remote system", e)
|
||||
}
|
||||
return false
|
||||
}
|
||||
|
||||
}
|
@ -0,0 +1,34 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor.pseudonym
|
||||
|
||||
import org.apache.commons.codec.binary.Base32
|
||||
import org.apache.commons.codec.digest.DigestUtils
|
||||
|
||||
|
||||
class AnonymizingGenerator : Generator {
|
||||
|
||||
override fun generate(id: String): String {
|
||||
return Base32().encodeAsString(DigestUtils.sha256(id))
|
||||
.substring(0..41)
|
||||
.lowercase()
|
||||
}
|
||||
|
||||
}
|
@ -0,0 +1,60 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor.pseudonym
|
||||
|
||||
import de.ukw.ccc.bwhc.dto.MtbFile
|
||||
import dev.dnpm.etl.processor.config.PseudonymizeConfigProperties
|
||||
|
||||
class PseudonymizeService(
|
||||
private val generator: Generator,
|
||||
private val configProperties: PseudonymizeConfigProperties
|
||||
) {
|
||||
|
||||
fun pseudonymize(mtbFile: MtbFile): MtbFile {
|
||||
val patientPseudonym = "${configProperties.prefix}_${generator.generate(mtbFile.patient.id)}"
|
||||
|
||||
mtbFile.episode.patient = patientPseudonym
|
||||
mtbFile.carePlans.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.patient.id = patientPseudonym
|
||||
mtbFile.claims.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.consent.patient = patientPseudonym
|
||||
mtbFile.claimResponses.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.diagnoses.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.ecogStatus.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.familyMemberDiagnoses.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.geneticCounsellingRequests.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.histologyReevaluationRequests.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.histologyReports.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.lastGuidelineTherapies.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.molecularPathologyFindings.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.molecularTherapies.forEach { it.history.forEach { it.patient = patientPseudonym } }
|
||||
mtbFile.ngsReports.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.previousGuidelineTherapies.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.rebiopsyRequests.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.recommendations.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.recommendations.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.responses.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.specimens.forEach { it.patient = patientPseudonym }
|
||||
mtbFile.specimens.forEach { it.patient = patientPseudonym }
|
||||
|
||||
return mtbFile
|
||||
}
|
||||
|
||||
}
|
@ -0,0 +1,52 @@
|
||||
/*
|
||||
* This file is part of ETL-Processor
|
||||
*
|
||||
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
|
||||
*
|
||||
* This program is free software: you can redistribute it and/or modify
|
||||
* it under the terms of the GNU Affero General Public License as published
|
||||
* by the Free Software Foundation, either version 3 of the License, or
|
||||
* (at your option) any later version.
|
||||
*
|
||||
* This program is distributed in the hope that it will be useful,
|
||||
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
* GNU Affero General Public License for more details.
|
||||
*
|
||||
* You should have received a copy of the GNU Affero General Public License
|
||||
* along with this program. If not, see <https://www.gnu.org/licenses/>.
|
||||
*/
|
||||
|
||||
package dev.dnpm.etl.processor.web
|
||||
|
||||
import de.ukw.ccc.bwhc.dto.MtbFile
|
||||
import dev.dnpm.etl.processor.output.MtbFileSender
|
||||
import dev.dnpm.etl.processor.output.RestMtbFileSender
|
||||
import dev.dnpm.etl.processor.pseudonym.PseudonymizeService
|
||||
import org.slf4j.LoggerFactory
|
||||
import org.springframework.web.bind.annotation.PostMapping
|
||||
import org.springframework.web.bind.annotation.RequestBody
|
||||
import org.springframework.web.bind.annotation.RestController
|
||||
|
||||
@RestController
|
||||
class MtbFileController(
|
||||
private val pseudonymizeService: PseudonymizeService,
|
||||
private val senders: List<MtbFileSender>
|
||||
) {
|
||||
|
||||
private val logger = LoggerFactory.getLogger(MtbFileController::class.java)
|
||||
|
||||
@PostMapping(path = ["/mtbfile"])
|
||||
fun mtbFile(@RequestBody mtbFile: MtbFile) {
|
||||
val pseudonymized = pseudonymizeService.pseudonymize(mtbFile)
|
||||
senders.forEach {
|
||||
val success = it.send(pseudonymized)
|
||||
if (success) {
|
||||
logger.info("Sent file for Patient '{}' using '{}'", pseudonymized.patient.id, it.javaClass.simpleName)
|
||||
} else {
|
||||
logger.error("Error sending file for Patient '{}' using '{}'", pseudonymized.patient.id, it.javaClass.simpleName)
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
}
|
5
src/main/resources/application.yml
Normal file
5
src/main/resources/application.yml
Normal file
@ -0,0 +1,5 @@
|
||||
spring:
|
||||
kafka:
|
||||
bootstrap-servers: ${app.kafka.servers}
|
||||
template:
|
||||
default-topic: ${app.kafka.topic}
|
Reference in New Issue
Block a user