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Code Issues Releases Activity

fix: handle null values in MtbFile

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This should not occur but if, it should not result in NPE except for

* Patient
* Consent
* Episode
This commit is contained in:
Paul-Christian Volkmer
2024-05-06 10:43:03 +02:00
parent 26b2f65e67
commit 107429fda7
2 changed files with 84 additions and 23 deletions
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46
src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt
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@ -1,7 +1,7 @@
/*
* This file is part of ETL-Processor
*
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
* Copyright (c) 2024 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
@ -31,31 +31,31 @@ import org.apache.commons.codec.digest.DigestUtils
infix fun MtbFile.pseudonymizeWith(pseudonymizeService: PseudonymizeService) {
val patientPseudonym = pseudonymizeService.patientPseudonym(this.patient.id)
this.episode.patient = patientPseudonym
this.carePlans.forEach { it.patient = patientPseudonym }
this.episode?.patient = patientPseudonym
this.carePlans?.forEach { it.patient = patientPseudonym }
this.patient.id = patientPseudonym
this.claims.forEach { it.patient = patientPseudonym }
this.consent.patient = patientPseudonym
this.claimResponses.forEach { it.patient = patientPseudonym }
this.diagnoses.forEach { it.patient = patientPseudonym }
this.ecogStatus.forEach { it.patient = patientPseudonym }
this.familyMemberDiagnoses.forEach { it.patient = patientPseudonym }
this.geneticCounsellingRequests.forEach { it.patient = patientPseudonym }
this.histologyReevaluationRequests.forEach { it.patient = patientPseudonym }
this.histologyReports.forEach {
this.claims?.forEach { it.patient = patientPseudonym }
this.consent?.patient = patientPseudonym
this.claimResponses?.forEach { it.patient = patientPseudonym }
this.diagnoses?.forEach { it.patient = patientPseudonym }
this.ecogStatus?.forEach { it.patient = patientPseudonym }
this.familyMemberDiagnoses?.forEach { it.patient = patientPseudonym }
this.geneticCounsellingRequests?.forEach { it.patient = patientPseudonym }
this.histologyReevaluationRequests?.forEach { it.patient = patientPseudonym }
this.histologyReports?.forEach {
it.patient = patientPseudonym
it.tumorMorphology.patient = patientPseudonym
it.tumorMorphology?.patient = patientPseudonym
}
this.lastGuidelineTherapies.forEach { it.patient = patientPseudonym }
this.molecularPathologyFindings.forEach { it.patient = patientPseudonym }
this.molecularTherapies.forEach { molecularTherapy -> molecularTherapy.history.forEach { it.patient = patientPseudonym } }
this.ngsReports.forEach { it.patient = patientPseudonym }
this.previousGuidelineTherapies.forEach { it.patient = patientPseudonym }
this.rebiopsyRequests.forEach { it.patient = patientPseudonym }
this.recommendations.forEach { it.patient = patientPseudonym }
this.responses.forEach { it.patient = patientPseudonym }
this.studyInclusionRequests.forEach { it.patient = patientPseudonym }
this.specimens.forEach { it.patient = patientPseudonym }
this.lastGuidelineTherapies?.forEach { it.patient = patientPseudonym }
this.molecularPathologyFindings?.forEach { it.patient = patientPseudonym }
this.molecularTherapies?.forEach { molecularTherapy -> molecularTherapy.history.forEach { it.patient = patientPseudonym } }
this.ngsReports?.forEach { it.patient = patientPseudonym }
this.previousGuidelineTherapies?.forEach { it.patient = patientPseudonym }
this.rebiopsyRequests?.forEach { it.patient = patientPseudonym }
this.recommendations?.forEach { it.patient = patientPseudonym }
this.responses?.forEach { it.patient = patientPseudonym }
this.studyInclusionRequests?.forEach { it.patient = patientPseudonym }
this.specimens?.forEach { it.patient = patientPseudonym }
}
/**