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Code Issues Releases Activity

fix: assign new value from scope function

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Paul-Christian Volkmer 2024-03-12 18:29:12 +01:00
parent af714f7b64
commit 12eb1feea6
1 changed files with 52 additions and 50 deletions
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102
src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt
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@ -74,150 +74,152 @@ infix fun MtbFile.anonymizeContentWith(pseudonymizeService: PseudonymizeService)
} }
this.episode?.apply { this.episode?.apply {
id?.apply { anonymize(this) } id = id?.let {
anonymize(it)
}
} }
this.carePlans?.onEach { carePlan -> this.carePlans?.onEach { carePlan ->
carePlan?.apply { carePlan?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
diagnosis?.apply { anonymize(this) } diagnosis = diagnosis?.let { anonymize(it) }
geneticCounsellingRequest?.apply { anonymize(this) } geneticCounsellingRequest = geneticCounsellingRequest?.let { anonymize(it) }
rebiopsyRequests = rebiopsyRequests.map { it?.apply { anonymize(this) } } rebiopsyRequests = rebiopsyRequests.map { it?.let { anonymize(it) } }
recommendations = recommendations.map { it?.apply { anonymize(this) } } recommendations = recommendations.map { it?.let { anonymize(it) } }
studyInclusionRequests = studyInclusionRequests.map { it?.apply { anonymize(this) } } studyInclusionRequests = studyInclusionRequests.map { it?.let { anonymize(it) } }
} }
} }
this.claims?.onEach { claim -> this.claims?.onEach { claim ->
claim?.apply { claim?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
therapy?.apply { anonymize(this) } therapy = therapy?.let { anonymize(it) }
} }
} }
this.claimResponses?.onEach { claimResponse -> this.claimResponses?.onEach { claimResponse ->
claimResponse?.apply { claimResponse?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
claim?.apply { anonymize(this) } claim = claim?.let { anonymize(it) }
} }
} }
this.consent?.apply { this.consent?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
} }
this.diagnoses?.onEach { diagnosis -> this.diagnoses?.onEach { diagnosis ->
diagnosis?.apply { diagnosis?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
histologyResults = histologyResults?.map { it?.apply { anonymize(this) } } histologyResults = histologyResults?.map { it?.let { anonymize(it) } }
} }
} }
this.ecogStatus?.onEach { ecogStatus -> this.ecogStatus?.onEach { ecogStatus ->
ecogStatus?.apply { ecogStatus?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
} }
} }
this.familyMemberDiagnoses?.onEach { familyMemberDiagnosis -> this.familyMemberDiagnoses?.onEach { familyMemberDiagnosis ->
familyMemberDiagnosis?.apply { familyMemberDiagnosis?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
} }
} }
this.geneticCounsellingRequests?.onEach { geneticCounsellingRequest -> this.geneticCounsellingRequests?.onEach { geneticCounsellingRequest ->
geneticCounsellingRequest?.apply { geneticCounsellingRequest?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
} }
} }
this.histologyReevaluationRequests?.onEach { histologyReevaluationRequest -> this.histologyReevaluationRequests?.onEach { histologyReevaluationRequest ->
histologyReevaluationRequest?.apply { histologyReevaluationRequest?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
specimen?.apply { anonymize(this) } specimen = specimen?.let { anonymize(it) }
} }
} }
this.histologyReports?.onEach { histologyReport -> this.histologyReports?.onEach { histologyReport ->
histologyReport?.apply { histologyReport?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
specimen?.apply { anonymize(this) } specimen = specimen?.let { anonymize(it) }
tumorMorphology?.apply { tumorMorphology?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
specimen?.apply { anonymize(this) } specimen = specimen?.let { anonymize(it) }
} }
tumorCellContent?.apply { tumorCellContent?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
specimen?.apply { anonymize(this) } specimen = specimen?.let { anonymize(it) }
} }
} }
} }
this.lastGuidelineTherapies?.onEach { lastGuidelineTherapy -> this.lastGuidelineTherapies?.onEach { lastGuidelineTherapy ->
lastGuidelineTherapy?.apply { lastGuidelineTherapy?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
diagnosis?.apply { anonymize(this) } diagnosis = diagnosis?.let { anonymize(it) }
} }
} }
this.molecularPathologyFindings?.onEach { molecularPathologyFinding -> this.molecularPathologyFindings?.onEach { molecularPathologyFinding ->
molecularPathologyFinding?.apply { molecularPathologyFinding?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
specimen?.apply { anonymize(this) } specimen = specimen?.let { anonymize(it) }
} }
} }
this.molecularTherapies?.onEach { molecularTherapy -> this.molecularTherapies?.onEach { molecularTherapy ->
molecularTherapy?.apply { molecularTherapy?.apply {
history?.onEach { history -> history?.onEach { history ->
history?.apply { history?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
basedOn?.apply { anonymize(this) } basedOn = basedOn?.let { anonymize(it) }
} }
} }
} }
} }
this.ngsReports?.onEach { ngsReport -> this.ngsReports?.onEach { ngsReport ->
ngsReport?.apply { ngsReport?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
specimen?.apply { anonymize(this) } specimen = specimen?.let { anonymize(it) }
tumorCellContent?.apply { tumorCellContent?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
specimen?.apply { anonymize(this) } specimen = specimen?.let { anonymize(it) }
} }
simpleVariants?.onEach { simpleVariant -> simpleVariants?.onEach { simpleVariant ->
simpleVariant?.apply { simpleVariant?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
} }
} }
} }
} }
this.previousGuidelineTherapies?.onEach { previousGuidelineTherapy -> this.previousGuidelineTherapies?.onEach { previousGuidelineTherapy ->
previousGuidelineTherapy?.apply { previousGuidelineTherapy?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
diagnosis?.apply { anonymize(this) } diagnosis = diagnosis?.let { anonymize(it) }
this.medication.forEach { medication -> medication.forEach { medication ->
medication?.apply { medication?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
} }
} }
} }
} }
this.rebiopsyRequests?.onEach { rebiopsyRequest -> this.rebiopsyRequests?.onEach { rebiopsyRequest ->
rebiopsyRequest?.apply { rebiopsyRequest?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
specimen?.apply { anonymize(this) } specimen = specimen?.let { anonymize(it) }
} }
} }
this.recommendations?.onEach { recommendation -> this.recommendations?.onEach { recommendation ->
recommendation?.apply { recommendation?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
diagnosis?.apply { anonymize(this) } diagnosis = diagnosis?.let { anonymize(it) }
ngsReport?.apply { anonymize(this) } ngsReport = ngsReport?.let { anonymize(it) }
} }
} }
this.responses?.onEach { response -> this.responses?.onEach { response ->
response?.apply { response?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
therapy?.apply { anonymize(this) } therapy = therapy?.let { anonymize(it) }
} }
} }
this.studyInclusionRequests?.onEach { studyInclusionRequest -> this.studyInclusionRequests?.onEach { studyInclusionRequest ->
studyInclusionRequest?.apply { studyInclusionRequest?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
reason?.apply { anonymize(this) } reason = reason?.let { anonymize(it) }
} }
} }
this.specimens?.onEach { specimen -> this.specimens?.onEach { specimen ->
specimen?.apply { specimen?.apply {
id?.apply { anonymize(this) } id = id?.let { anonymize(it) }
} }
} }
} }