diff --git a/src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt b/src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt new file mode 100644 index 0000000..ac6ac07 --- /dev/null +++ b/src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt @@ -0,0 +1,64 @@ +/* + * This file is part of ETL-Processor + * + * Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as published + * by the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package dev.dnpm.etl.processor.pseudonym + +import com.fasterxml.jackson.databind.ObjectMapper +import de.ukw.ccc.bwhc.dto.MtbFile +import org.assertj.core.api.Assertions.assertThat +import org.junit.jupiter.api.Test +import org.junit.jupiter.api.extension.ExtendWith +import org.mockito.ArgumentMatchers +import org.mockito.Mock +import org.mockito.junit.jupiter.MockitoExtension +import org.mockito.kotlin.doAnswer +import org.mockito.kotlin.whenever +import org.springframework.core.io.ClassPathResource + +const val FAKE_MTB_FILE_PATH = "fake_MTBFile.json" +const val CLEAN_PATIENT_ID = "5dad2f0b-49c6-47d8-a952-7b9e9e0f7549" + +@ExtendWith(MockitoExtension::class) +class ExtensionsTest { + + private fun fakeMtbFile(): MtbFile { + val mtbFile = ClassPathResource(FAKE_MTB_FILE_PATH).inputStream + return ObjectMapper().readValue(mtbFile, MtbFile::class.java) + } + + private fun MtbFile.serialized(): String { + return ObjectMapper().writeValueAsString(this) + } + + @Test + fun shouldNotContainCleanPatientId(@Mock pseudonymizeService: PseudonymizeService) { + doAnswer { + it.arguments[0] + "PSEUDO-ID" + }.whenever(pseudonymizeService).patientPseudonym(ArgumentMatchers.anyString()) + + val mtbFile = fakeMtbFile() + + mtbFile.pseudonymizeWith(pseudonymizeService) + + assertThat(mtbFile.patient.id).isEqualTo("PSEUDO-ID") + assertThat(mtbFile.serialized()).doesNotContain(CLEAN_PATIENT_ID) + } + +} \ No newline at end of file diff --git a/src/test/resources/fake_MTBFile.json b/src/test/resources/fake_MTBFile.json new file mode 100644 index 0000000..600eb39 --- /dev/null +++ b/src/test/resources/fake_MTBFile.json @@ -0,0 +1 @@ +{"patient":{"id":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","gender":"female","birthDate":"1971-03","insurance":"Barmer"},"consent":{"id":"b93e4717-7b0e-4ca5-a5d6-cf8d0f7b14cf","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","status":"active"},"episode":{"id":"8ddb893f-0d55-412f-a257-9bc8bb054549","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","period":{"start":"2021-12-29"}},"diagnoses":[{"id":"ed1f151c-0707-4bbf-bb02-9654310ac1f8","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","recordedOn":"2023-12-14","icd10":{"code":"C16.0","display":"Bösartige Neubildung: Kardia","version":"2023","system":"ICD-10-GM"},"whoGrade":{"code":"III","system":"WHO-Grading-CNS-Tumors"},"histologyResults":["385926d9-51f2-4a3a-96b6-57c5effefd84"],"statusHistory":[{"status":"local","date":"2023-12-14"},{"status":"unknown","date":"2023-12-14"}],"guidelineTreatmentStatus":"no-guidelines-available"}],"familyMemberDiagnoses":[{"id":"c434f063-76d9-4a7f-8ff2-34cd55fc56b2","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","relationship":{"code":"EXT","system":"http://terminology.hl7.org/ValueSet/v3-FamilyMember"}},{"id":"b07a73a8-70ed-48f8-a745-e82e7a5907a8","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","relationship":{"code":"EXT","system":"http://terminology.hl7.org/ValueSet/v3-FamilyMember"}}],"previousGuidelineTherapies":[{"id":"6435d684-18e3-45ad-b063-cdc303f61aa2","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","diagnosis":"ed1f151c-0707-4bbf-bb02-9654310ac1f8","therapyLine":4,"medication":[{"code":"L01XC18","system":"ATC","display":"Pembrolizumab","version":"2020"},{"code":"L01XE21","system":"ATC","display":"Regorafenib","version":"2020"},{"code":"L01XC17","system":"ATC","display":"Nivolumab","version":"2020"}]},{"id":"e35731db-7447-4c4b-896a-0e90f1e68c67","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","diagnosis":"ed1f151c-0707-4bbf-bb02-9654310ac1f8","therapyLine":4,"medication":[{"code":"L01XX46","system":"ATC","display":"Olaparib","version":"2020"},{"code":"L01XX32","system":"ATC","display":"Bortezomib","version":"2020"},{"code":"L01XE02","system":"ATC","display":"Gefitinib","version":"2020"}]},{"id":"d8a46cf9-cdc9-4f0d-b106-5aa57e08c4d0","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","diagnosis":"ed1f151c-0707-4bbf-bb02-9654310ac1f8","therapyLine":1,"medication":[{"code":"L01XC28","system":"ATC","display":"Durvalumab","version":"2020"},{"code":"L01XC06","system":"ATC","display":"Cetuximab","version":"2020"},{"code":"L01XE47","system":"ATC","display":"Dacomitinib","version":"2020"}]}],"lastGuidelineTherapies":[{"id":"9152b20d-ac04-406c-b18b-5b6f7f4d1911","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","diagnosis":"ed1f151c-0707-4bbf-bb02-9654310ac1f8","therapyLine":1,"period":{"start":"2023-12-14","end":"2024-01-04"},"medication":[{"code":"L01DB01","system":"ATC","display":"Doxorubicin","version":"2020"}],"reasonStopped":{"code":"toxicity","system":"MTB-CDS:GuidelineTherapy-StopReason"}}],"ecogStatus":[{"id":"51589dd2-f48d-4c41-8740-292b88d63b30","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","effectiveDate":"2023-12-14","value":{"code":"2","system":"ECOG-Performance-Status"}},{"id":"30caf153-a30a-4a1c-9056-fd4eae2a55da","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","effectiveDate":"2023-12-14","value":{"code":"4","system":"ECOG-Performance-Status"}}],"specimens":[{"id":"40043ae5-d4cb-48e4-85c6-b34266b7693f","patient":"5dad2f0b-49c6-47d8-a952-7b9e9e0f7549","icd10":{"code":"C16.0","display":"Bösartige 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