From 707bc55ab60fff7ee149a21eafabdd1e7a45a22c Mon Sep 17 00:00:00 2001
From: Niklas <niklas@ytvwld.de>
Date: Thu, 14 Dec 2023 12:55:09 +0100
Subject: [PATCH] fix: Replace the patient's id in more places (#14)

This adds studyInclusionRequests and tumorMorphology.
---
 .../kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt  | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt b/src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt
index c0050a4..0bf4913 100644
--- a/src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt
+++ b/src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt
@@ -35,7 +35,10 @@ infix fun MtbFile.pseudonymizeWith(pseudonymizeService: PseudonymizeService) {
     this.familyMemberDiagnoses.forEach { it.patient = patientPseudonym }
     this.geneticCounsellingRequests.forEach { it.patient = patientPseudonym }
     this.histologyReevaluationRequests.forEach { it.patient = patientPseudonym }
-    this.histologyReports.forEach { it.patient = patientPseudonym }
+    this.histologyReports.forEach {
+        it.patient = patientPseudonym
+        it.tumorMorphology.patient = patientPseudonym
+    }
     this.lastGuidelineTherapies.forEach { it.patient = patientPseudonym }
     this.molecularPathologyFindings.forEach { it.patient = patientPseudonym }
     this.molecularTherapies.forEach { molecularTherapy -> molecularTherapy.history.forEach { it.patient = patientPseudonym } }
@@ -45,6 +48,6 @@ infix fun MtbFile.pseudonymizeWith(pseudonymizeService: PseudonymizeService) {
     this.recommendations.forEach { it.patient = patientPseudonym }
     this.recommendations.forEach { it.patient = patientPseudonym }
     this.responses.forEach { it.patient = patientPseudonym }
-    this.specimens.forEach { it.patient = patientPseudonym }
+    this.studyInclusionRequests.forEach { it.patient = patientPseudonym }
     this.specimens.forEach { it.patient = patientPseudonym }
 }
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