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feat: add page that shows transformation configuration

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This commit is contained in:
Paul-Christian Volkmer 2023-12-04 17:35:44 +01:00
parent 7f54efe034
commit 8e83fe1c12
5 changed files with 117 additions and 1 deletions
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6
src/main/kotlin/dev/dnpm/etl/processor/services/TransformationService.kt
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@ -51,9 +51,13 @@ class TransformationService(private val objectMapper: ObjectMapper, private val
return objectMapper.readValue(json, MtbFile::class.java) return objectMapper.readValue(json, MtbFile::class.java)
} }
fun getTransformations(): List<Transformation> {
return this.transformations
}
} }
class Transformation private constructor(internal val path: String) { class Transformation private constructor(val path: String) {
lateinit var existingValue: Any lateinit var existingValue: Any
private set private set

41
src/main/kotlin/dev/dnpm/etl/processor/web/TransformationController.kt Normal file
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@ -0,0 +1,41 @@
/*
* This file is part of ETL-Processor
*
* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see <https://www.gnu.org/licenses/>.
*/
package dev.dnpm.etl.processor.web
import dev.dnpm.etl.processor.services.TransformationService
import org.springframework.stereotype.Controller
import org.springframework.ui.Model
import org.springframework.web.bind.annotation.GetMapping
import org.springframework.web.bind.annotation.RequestMapping
@Controller
@RequestMapping(path = ["transformations"])
class TransformationController(
private val transformationService: TransformationService
) {
@GetMapping
fun index(model: Model): String {
model.addAttribute("transformations", transformationService.getTransformations())
return "transformations"
}
}

23
src/main/resources/static/style.css
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@ -86,6 +86,10 @@ nav > ul > li:first-of-type {
text-decoration: none; text-decoration: none;
} }
.centered {
text-align: center;
}
main { main {
margin: 0 auto; margin: 0 auto;
max-width: 1140px; max-width: 1140px;
@ -209,6 +213,25 @@ td.bg-gray, th.bg-gray {
color: white; color: white;
} }
.bg-path {
background: var(--bg-gray-op);
}
.bg-from {
background: var(--bg-red-op);
}
.bg-to {
background: var(--bg-green-op);
}
.bg-path, .bg-from, .bg-to {
padding: 0.25rem 0.5rem;
border-radius: 3px;
font-family: monospace;
}
td.bg-shaded, th.bg-shaded { td.bg-shaded, th.bg-shaded {
background: repeating-linear-gradient(140deg, white, #e5e5f5 4px, white 8px); background: repeating-linear-gradient(140deg, white, #e5e5f5 4px, white 8px);
} }

1
src/main/resources/templates/fragments.html
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@ -10,6 +10,7 @@
<ul> <ul>
<li><a th:href="@{/}">Übersicht</a></li> <li><a th:href="@{/}">Übersicht</a></li>
<li><a th:href="@{/statistics}">Statistiken</a></li> <li><a th:href="@{/statistics}">Statistiken</a></li>
<li><a th:href="@{/transformations}">Transformationen</a></li>
</ul> </ul>
</nav> </nav>
</div> </div>

47
src/main/resources/templates/transformations.html Normal file
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@ -0,0 +1,47 @@
<!DOCTYPE html>
<html lang="de" xmlns:th="http://www.thymeleaf.org">
<head>
<meta charset="UTF-8">
<title>ETL-Prozessor</title>
<link rel="stylesheet" th:href="@{/style.css}" />
</head>
<body>
<div th:replace="~{fragments.html :: nav}"></div>
<main>
<h1>Transformationen</h1>
<h2>Syntax</h2>
Hier einige Beispiele zum Syntax des JSON-Path
<ul>
<li style="padding: 0.6rem 0;"><span class="bg-path">diagnoses[*].icdO3T.version</span>: Ersetze die ICD-O3T-Version in allen Diagnosen, z.B. zur Version der deutschen Übersetzung</li>
<li style="padding: 0.6rem 0;"><span class="bg-path">patient.gender</span>: Ersetze das Geschlecht des Patienten, z.B. in das von bwHC verlangte Format</li>
</ul>
<h2>Konfigurierte Transformationen</h2>
<p>
Hier sehen Sie eine Übersicht der konfigurierten Transformationen.
</p>
<table>
<thead>
<tr>
<th>JSON-Path</th>
<th>Transformation von &rArr; nach</th>
</tr>
</thead>
<tbody>
<tr th:each="transformation : ${transformations}">
<td>
<span class="bg-path" title="Ersetze Wert(e) an dieser Stelle im MTB-File">[[ ${transformation.path} ]]</span>
</td>
<td>
<span class="bg-from" title="Ersetze immer dann, wenn dieser Wert enthalten ist">[[ ${transformation.existingValue} ]]</span>
<strong>&rArr;</strong>
<span class="bg-to" title="Ersetze durch diesen Wert">[[ ${transformation.newValue} ]]</span>
</td>
</tr>
</tbody>
</table>
</main>
</body>
</html>