c892ff2461
test #17 : add tests for retry
2024-01-04 11:50:39 +01:00
4a9cffbaa5
feat #17 : initial support for request retry
2024-01-04 07:33:03 +01:00
4ab20a5f16
fix: add rest uri config to integration tests
2024-01-02 07:22:17 +01:00
e5d80f89b0
feat #15 : add connection checks to bwHC backend
2024-01-02 06:51:01 +01:00
3cc4f8c1a4
test: add tests to ensure patient id pseudonym
...
This uses fake MTBFile JSON as described here:
https://ibmi-intra.cs.uni-tuebingen.de/display/ZPM/bwHC+REST+API
2023-12-14 12:56:36 +01:00
Niklas
707bc55ab6
fix: Replace the patient's id in more places ( #14 )
...
This adds studyInclusionRequests and tumorMorphology.
2023-12-14 12:55:09 +01:00
d7949a7dce
test: expect sorted data quality report issues
2023-12-05 14:34:51 +01:00
f5999ff325
test: expect 3 issues with different severity
2023-12-05 14:31:43 +01:00
a62da60809
feat: sort data quality report items by severity
2023-12-05 14:24:53 +01:00
ced6609d9a
fix: add info severity to data quality report
2023-12-05 14:24:40 +01:00
3e45de56cf
feat: add page that shows transformation configuration
2023-12-04 17:35:44 +01:00
effcdd811f
style: add colored table rows for requests
2023-12-04 16:11:02 +01:00
cf2d338e13
test: add integration test for mtb file transformation
2023-11-25 14:33:02 +01:00
eb24995ed9
Issue #12 : Log transformation count applied on application start
2023-10-05 12:35:29 +02:00
4196664060
Issue #12 : Transform MTBFile objects by using transformation rules
2023-10-05 12:09:56 +02:00
1e1db1c4d9
Issue #12 : Add application config for transformation configuration
2023-10-05 11:37:10 +02:00
7440fe1e23
Issue #12 : Basic implementation of transformation service
2023-10-05 10:51:49 +02:00
jlidke
bf8f87b261
fix: removed gaps system from GPAS pseudonym value. Also added clean up method, which will replace filename invalid characters witch '_'. ( #11 )
2023-09-04 15:41:22 +02:00
79709caa39
Merge remote-tracking branch 'origin/add-docker-build'
2023-08-30 13:29:06 +02:00
Jakub Lidke
edafe30a4b
chore: added log msg to GpasPseudonymGenerator
2023-08-30 11:51:08 +02:00
5e93e834ad
Remove comment to use host alias
2023-08-30 10:24:48 +02:00
Jakub Lidke
5e5bd579fb
test: * added additional external host 'localhost', now we can connect without additional host alias. * added akhq to dev-compose.yml
2023-08-30 10:21:38 +02:00
Jakub Lidke
532254593f
test: * added additional external host 'localhost', now we can connect without additional host alias. * added akhq to dev-compose.yml
2023-08-28 12:47:09 +02:00
Jakub Lidke
aa40da4995
chore: dev kafka is available via localhost, now.
2023-08-25 13:11:10 +02:00
9921e1e684
Throw PseudonymRequestFailed exception with error message
...
This will throw an exception with error message describing what the error is instead of
having a more generic NoSuchElementException to be thrown if Optional.get() has no value
after calling findFirst() on an empty stream.
2023-08-19 11:45:21 +02:00
8dc82225a4
Issue #7 : Send and expect requestId in record body, not in record key ( #8 )
2023-08-16 15:25:46 +02:00
2eb5cc61b9
Change Kafka response body JSON alias
2023-08-15 10:58:17 +02:00
66dc96680d
Update dev config and added related information into README.md
2023-08-15 01:09:22 +02:00
72295202ec
Code cleanup
2023-08-12 22:19:29 +02:00
6ecb439007
Issue #3 : Detect the request type of request with last known status ( #5 )
2023-08-11 09:22:54 +02:00
cb9c590472
Issue #2 : Do not serialize JSON string as custom string ( #4 )
...
In addition to that, if REST request did not contain a response body, use empty
string as data quality report string.
2023-08-11 09:13:45 +02:00
002b0618cf
Add tests for KafkaMtbFileSender
2023-08-10 13:35:35 +02:00
2b42a4d262
Tests for RestMtbFileSender
2023-08-10 12:14:13 +02:00
1a640ff9df
Decouple request and response processing
2023-08-09 18:15:20 +02:00
7f048e2483
Do not append custom prefix to gPAS pseudonym
2023-08-09 12:26:57 +02:00
47830ed9f7
Use single MtbFileSender
2023-08-09 10:34:23 +02:00
13bfa0018d
Change endpoint configuration to select single endpoint
...
* If REST endpoint is configured, it will be used
* If Kafka endpoint is configured, it will be used
* If both endpoints are configured, REST configuration has precedence and will be used
2023-08-09 10:22:03 +02:00
7739afad1f
Handle MTB File with rejected consent as deletion request
2023-08-09 08:13:27 +02:00
6ad6ee13a1
Ignore unknown properties in DataQualityResponse
2023-08-08 19:20:45 +02:00
536ecbbd56
Add tests for error response status
2023-08-08 18:52:03 +02:00
422441a3b3
Add tests for RequestProcessor
2023-08-08 16:46:02 +02:00
b75328b74d
Move integration tests into own source-set
2023-08-08 15:16:58 +02:00
4051b5094c
Keep database testcontainer alive until all tests are done
2023-08-08 14:58:10 +02:00
bcc23f6b14
Add RequestService to handle access to requests
2023-08-08 14:57:31 +02:00
1fc09d691e
Rename test class to match applications main class name
2023-08-08 13:34:53 +02:00
3039b4b2a7
Add basic Testcontainers test setup
2023-08-08 13:23:37 +02:00
459ad59c1d
Do not detect duplicates after deletion request
2023-08-04 11:43:23 +02:00
b14f2c1794
Add information about 'no connection' responses
2023-08-03 16:18:16 +02:00
ec76c775d9
Explicit producer topic configuration
2023-08-03 16:04:57 +02:00
3dcee41569
Implement delete request using Apache Kafka
...
This is implemented using a fake MTB file containing a rejected
consent state and will be mapped to HTTP DELETE on kafka-to-bwhc
consumer.
2023-08-03 15:14:49 +02:00
