Niklas
707bc55ab6
fix: Replace the patient's id in more places ( #14 )
...
This adds studyInclusionRequests and tumorMorphology.
2023-12-14 12:55:09 +01:00
a62da60809
feat: sort data quality report items by severity
2023-12-05 14:24:53 +01:00
ced6609d9a
fix: add info severity to data quality report
2023-12-05 14:24:40 +01:00
3e45de56cf
feat: add page that shows transformation configuration
2023-12-04 17:35:44 +01:00
effcdd811f
style: add colored table rows for requests
2023-12-04 16:11:02 +01:00
eb24995ed9
Issue #12 : Log transformation count applied on application start
2023-10-05 12:35:29 +02:00
4196664060
Issue #12 : Transform MTBFile objects by using transformation rules
2023-10-05 12:09:56 +02:00
1e1db1c4d9
Issue #12 : Add application config for transformation configuration
2023-10-05 11:37:10 +02:00
7440fe1e23
Issue #12 : Basic implementation of transformation service
2023-10-05 10:51:49 +02:00
jlidke
bf8f87b261
fix: removed gaps system from GPAS pseudonym value. Also added clean up method, which will replace filename invalid characters witch '_'. ( #11 )
2023-09-04 15:41:22 +02:00
79709caa39
Merge remote-tracking branch 'origin/add-docker-build'
2023-08-30 13:29:06 +02:00
Jakub Lidke
edafe30a4b
chore: added log msg to GpasPseudonymGenerator
2023-08-30 11:51:08 +02:00
5e93e834ad
Remove comment to use host alias
2023-08-30 10:24:48 +02:00
Jakub Lidke
5e5bd579fb
test: * added additional external host 'localhost', now we can connect without additional host alias. * added akhq to dev-compose.yml
2023-08-30 10:21:38 +02:00
Jakub Lidke
532254593f
test: * added additional external host 'localhost', now we can connect without additional host alias. * added akhq to dev-compose.yml
2023-08-28 12:47:09 +02:00
Jakub Lidke
aa40da4995
chore: dev kafka is available via localhost, now.
2023-08-25 13:11:10 +02:00
9921e1e684
Throw PseudonymRequestFailed exception with error message
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This will throw an exception with error message describing what the error is instead of
having a more generic NoSuchElementException to be thrown if Optional.get() has no value
after calling findFirst() on an empty stream.
2023-08-19 11:45:21 +02:00
8dc82225a4
Issue #7 : Send and expect requestId in record body, not in record key ( #8 )
2023-08-16 15:25:46 +02:00
2eb5cc61b9
Change Kafka response body JSON alias
2023-08-15 10:58:17 +02:00
66dc96680d
Update dev config and added related information into README.md
2023-08-15 01:09:22 +02:00
72295202ec
Code cleanup
2023-08-12 22:19:29 +02:00
6ecb439007
Issue #3 : Detect the request type of request with last known status ( #5 )
2023-08-11 09:22:54 +02:00
cb9c590472
Issue #2 : Do not serialize JSON string as custom string ( #4 )
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In addition to that, if REST request did not contain a response body, use empty
string as data quality report string.
2023-08-11 09:13:45 +02:00
002b0618cf
Add tests for KafkaMtbFileSender
2023-08-10 13:35:35 +02:00
2b42a4d262
Tests for RestMtbFileSender
2023-08-10 12:14:13 +02:00
1a640ff9df
Decouple request and response processing
2023-08-09 18:15:20 +02:00
7f048e2483
Do not append custom prefix to gPAS pseudonym
2023-08-09 12:26:57 +02:00
47830ed9f7
Use single MtbFileSender
2023-08-09 10:34:23 +02:00
13bfa0018d
Change endpoint configuration to select single endpoint
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* If REST endpoint is configured, it will be used
* If Kafka endpoint is configured, it will be used
* If both endpoints are configured, REST configuration has precedence and will be used
2023-08-09 10:22:03 +02:00
7739afad1f
Handle MTB File with rejected consent as deletion request
2023-08-09 08:13:27 +02:00
6ad6ee13a1
Ignore unknown properties in DataQualityResponse
2023-08-08 19:20:45 +02:00
422441a3b3
Add tests for RequestProcessor
2023-08-08 16:46:02 +02:00
bcc23f6b14
Add RequestService to handle access to requests
2023-08-08 14:57:31 +02:00
459ad59c1d
Do not detect duplicates after deletion request
2023-08-04 11:43:23 +02:00
b14f2c1794
Add information about 'no connection' responses
2023-08-03 16:18:16 +02:00
ec76c775d9
Explicit producer topic configuration
2023-08-03 16:04:57 +02:00
3dcee41569
Implement delete request using Apache Kafka
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This is implemented using a fake MTB file containing a rejected
consent state and will be mapped to HTTP DELETE on kafka-to-bwhc
consumer.
2023-08-03 15:14:49 +02:00
ac91620651
Use Map as status body since it contains JSON
2023-08-03 12:59:53 +02:00
577509e6f2
Map 'status_code' and 'status code' to same data value
2023-08-02 16:53:09 +02:00
7f8b21efd2
Handle not parsable data quality reports
2023-08-02 16:23:16 +02:00
70d4fa2f0f
Use duplication fingerprinting based on MTB file requests only
2023-08-02 16:10:53 +02:00
35cb258b13
Do not return specific status code based on remote status code
2023-08-02 16:10:18 +02:00
51cf7a7917
Add processor to handle responses from Kafka topic
2023-08-02 12:00:04 +02:00
857bd157a0
Modified config property to select pseudonym generator
2023-08-01 16:06:40 +02:00
ccf6908223
Added statistics update using SSE for delete requests
2023-08-01 13:54:26 +02:00
7a7ea8c96d
Extract request processing
2023-08-01 12:39:15 +02:00
11ed3a6296
Show request type in addition to state and ID
2023-08-01 08:53:43 +02:00
9c9760c3ec
Add delete requests to be shown in statistics page
2023-08-01 08:46:00 +02:00
4f7f5e4d89
Add request type to be saved with each request
2023-08-01 08:39:30 +02:00
a1e56f1596
Handle delete requests by using REST request to bwHC
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Kafka implementation is not implemented yet.
2023-07-31 19:25:15 +02:00
