pcvolkmer/fastq-tools
1
0
Fork 0
mirror of https://github.com/pcvolkmer/fastq-tools.git synced 2025-09-13 05:02:53 +00:00
Code Issues Packages Releases Activity

feat: implement info subcommand

Browse Source
This commit is contained in:
Paul-Christian Volkmer
2025-08-11 15:36:20 +02:00
parent 6ca8fa3cdb
commit 09c573f2f2
5 changed files with 218 additions and 6 deletions
Download Patch File Download Diff File Expand all files Collapse all files

16
README.md
View File

@@ -6,10 +6,24 @@ Application to show information about and scramble FASTQ files to provide non-se
This application provides the following subcommands
### Info
To show information about compressed FASTQ files use:
```shell
cat file_fastq.gz | gzip -d | fastq-tools info
```
This will result in output like
![Info subcommand](docs/info_subcommand.jpg)
### Scramble
To scramble compressed FASTQ files use:
```shell
cat file_fastq.gz | gzip -d | fastq-tools scramble | gzip > scrambled_fastq.gz
```
```
This will scramble headers and sequences and write the output into `scrambled_fastq.gz`.