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fix: use string value of enums

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Paul-Christian Volkmer
2025-06-09 14:42:15 +02:00
parent be6e001280
commit 74870b58e3
2 changed files with 129 additions and 41 deletions
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8
src/main/resources/templates/files.html
View File

@ -32,10 +32,10 @@
<label> <label>
Dateityp Dateityp
<select name="fileType"> <select name="fileType">
<option th:selected="${file.fileType != null and file.fileType.value == 'bam'}">BAM</option> <option th:selected="${file.fileType != null and file.fileType.value == 'bam'}" value="BAM">BAM</option>
<option th:selected="${file.fileType != null and file.fileType.value == 'vcf'}">Vcf</option> <option th:selected="${file.fileType != null and file.fileType.value == 'vcf'}" value="VCF">Vcf</option>
<option th:selected="${file.fileType != null and file.fileType.value == 'bed'}">BED</option> <option th:selected="${file.fileType != null and file.fileType.value == 'bed'}" value="BED">BED</option>
<option th:selected="${file.fileType != null and file.fileType.value == 'fastq'}">FASTQ</option> <option th:selected="${file.fileType != null and file.fileType.value == 'fastq'}" value="FASTQ" >FASTQ</option>
</select> </select>
</label> </label>
</div> </div>

162
src/main/resources/templates/labdatas.html
View File

@ -59,8 +59,8 @@
<label> <label>
Sequenzierungsart Sequenzierungsart
<select name="sequenceType"> <select name="sequenceType">
<option th:selected="${labdata.sequenceType != null and labdata.sequenceType.value == 'DNA'}" value="DNA">dna</option> <option th:selected="${labdata.sequenceType != null and labdata.sequenceType.value == 'dna'}" value="DNA">dna</option>
<option th:selected="${labdata.sequenceType != null and labdata.sequenceType.value == 'RNA'}" value="RNA">rna</option> <option th:selected="${labdata.sequenceType != null and labdata.sequenceType.value == 'rna'}" value="RNA">rna</option>
</select> </select>
</label> </label>
</div> </div>
@ -69,10 +69,10 @@
<label> <label>
Sequenzierungsunterart Sequenzierungsunterart
<select name="sequenceSubtype"> <select name="sequenceSubtype">
<option th:selected="${labdata.sequenceSubtype != null and labdata.sequenceSubtype.value == 'GERMLINE'}" value="GERMLINE">germline</option> <option th:selected="${labdata.sequenceSubtype != null and labdata.sequenceSubtype.value == 'germline'}" value="GERMLINE">germline</option>
<option th:selected="${labdata.sequenceSubtype != null and labdata.sequenceSubtype.value == 'SOMATIC'}" value="SOMATIC">somatic</option> <option th:selected="${labdata.sequenceSubtype != null and labdata.sequenceSubtype.value == 'somatic'}" value="SOMATIC">somatic</option>
<option th:selected="${labdata.sequenceSubtype != null and labdata.sequenceSubtype.value == 'OTHER'}" value="OTHER">other</option> <option th:selected="${labdata.sequenceSubtype != null and labdata.sequenceSubtype.value == 'other'}" value="OTHER">other</option>
<option th:selected="${labdata.sequenceSubtype != null and labdata.sequenceSubtype.value == 'UNKNOWN'}" value="UNKNOWN">unknown</option> <option th:selected="${labdata.sequenceSubtype != null and labdata.sequenceSubtype.value == 'unknown'}" value="UNKNOWN">unknown</option>
</select> </select>
</label> </label>
</div> </div>
@ -81,29 +81,40 @@
<label> <label>
Fragmentierungsart Fragmentierungsart
<select name="fragmentationMethod"> <select name="fragmentationMethod">
<option th:selected="${labdata.fragmentationMethod != null and labdata.fragmentationMethod.value == 'SONICATION'}" value="SONICATION">sonication</option> <option th:selected="${labdata.fragmentationMethod != null and labdata.fragmentationMethod.value == 'sonication'}" value="SONICATION">sonication</option>
<option th:selected="${labdata.fragmentationMethod != null and labdata.fragmentationMethod.value == 'ENZYMATIC'}" value="ENZYMATIC">enzymatic</option> <option th:selected="${labdata.fragmentationMethod != null and labdata.fragmentationMethod.value == 'enzymatic'}" value="ENZYMATIC">enzymatic</option>
<option th:selected="${labdata.fragmentationMethod != null and labdata.fragmentationMethod.value == 'NONE'}" value="NONE">none</option> <option th:selected="${labdata.fragmentationMethod != null and labdata.fragmentationMethod.value == 'none'}" value="NONE">none</option>
<option th:selected="${labdata.fragmentationMethod != null and labdata.fragmentationMethod.value == 'OTHER'}" value="OTHER">other</option> <option th:selected="${labdata.fragmentationMethod != null and labdata.fragmentationMethod.value == 'other'}" value="OTHER">other</option>
<option th:selected="${labdata.fragmentationMethod != null and labdata.fragmentationMethod.value == 'UNKNOWN'}" value="UNKNOWN">unknown</option> <option th:selected="${labdata.fragmentationMethod != null and labdata.fragmentationMethod.value == 'unknown'}" value="UNKNOWN">unknown</option>
</select> </select>
</label> </label>
</div> </div>
<div>
<label class="optional">
Sequenzierprofil (Optionale Angabe)
<select name="profile">
<option value="">Kein Sequenzierprofil</option>
<option th:each="labdataprofile : ${labdataprofiles}" th:selected="${labdataprofile.id == labdata.profile}" th:value="${labdataprofile.id}" th:text="${labdataprofile.profileName}"></option>
</select>
</label>
</div>
<th:block th:if="${labdata.profileData == null}">
<div> <div>
<label> <label>
Library Type Library Type
<select name="libraryType"> <select name="libraryType">
<option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'PANEL'}" value="PANEL">panel</option> <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'panel'}" value="PANEL">panel</option>
<option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'PANEL_LR'}" value="PANEL_LR">panel_lr</option> <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'panel_lr'}" value="PANEL_LR">panel_lr</option>
<option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'WES'}" value="WES">wes</option> <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wes'}" value="WES">wes</option>
<option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'WES_LR'}" value="WES_LR">wes_lr</option> <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wes_lr'}" value="WES_LR">wes_lr</option>
<option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'WGS'}" value="WGS">wgs</option> <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wgs'}" value="WGS">wgs</option>
<option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'WGS_LR'}" value="WGS_LR">wgs_lr</option> <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wgs_lr'}" value="WGS_LR">wgs_lr</option>
<option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'WXS'}" value="WXS">wxs</option> <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wxs'}" value="WXS">wxs</option>
<option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'WXS_LR'}" value="WXS_LR">wxs_lr</option> <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wxs_lr'}" value="WXS_LR">wxs_lr</option>
<option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'OTHER'}" value="OTHER">other</option> <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'other'}" value="OTHER">other</option>
<option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'UNKNOWN'}" value="UNKNOWN">unknown</option> <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'unknown'}" value="UNKNOWN">unknown</option>
</select> </select>
</label> </label>
</div> </div>
@ -153,25 +164,102 @@
<label> <label>
Hersteller Hersteller
<select name="enrichmentKitManufacturer"> <select name="enrichmentKitManufacturer">
<option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'ILLUMINA'}" value="ILLUMINA">Illumina</option> <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'Illumina'}" value="ILLUMINA">Illumina</option>
<option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'AGILENT'}" value="AGILENT">Agilent</option> <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'Agilent'}" value="AGILENT">Agilent</option>
<option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'TIST'}" value="TIST">Twist</option> <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'Twist'}" value="TIST">Twist</option>
<option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'NEB'}" value="NEB">NEB</option> <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'NEB'}" value="NEB">NEB</option>
<option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'OTHER'}" value="OTHER">other</option> <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'other'}" value="OTHER">other</option>
<option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'UNKNOWN'}" value="UNKNOWN">unknown</option> <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'unknown'}" value="UNKNOWN">unknown</option>
<option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'NONE'}" value="NONE">none</option> <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'none'}" value="NONE">none</option>
</select>
</label>
</div>
</th:block>
<th:block th:if="${labdata.profileData != null}">
<div>
<label class="optional">
Library Type
<select name="libraryType" disabled>
<option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'panel'}" value="PANEL">panel</option>
<option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'panel_lr'}" value="PANEL_LR">panel_lr</option>
<option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'wes'}" value="WES">wes</option>
<option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'wes_lr'}" value="WES_LR">wes_lr</option>
<option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'wgs'}" value="WGS">wgs</option>
<option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'wgs_lr'}" value="WGS_LR">wgs_lr</option>
<option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'wxs'}" value="WXS">wxs</option>
<option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'wxs_lr'}" value="WXS_LR">wxs_lr</option>
<option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'other'}" value="OTHER">other</option>
<option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'unknown'}" value="UNKNOWN">unknown</option>
</select> </select>
</label> </label>
</div> </div>
<div>
<label class="optional">
Preparation Kit - Name
<input type="text" name="libraryPrepKit" th:value="${labdata.profileData.libraryPrepKit}" disabled/>
</label>
<label class="optional">
Hersteller
<input type="text" name="libraryPrepKitManufacturer" th:value="${labdata.profileData.libraryPrepKitManufacturer}" disabled/>
</label>
</div>
<div>
<label class="optional">
Sequencer - Modell
<input type="text" name="sequencerModel" th:value="${labdata.profileData.sequencerModel}" disabled/>
</label>
<label class="optional">
Hersteller
<input type="text" name="sequencerManufacturer" th:value="${labdata.profileData.sequencerManufacturer}" disabled/>
</label>
</div>
<div>
<label class="optional">
Kit - Name/Version
<input type="text" name="kitName" th:value="${labdata.profileData.kitName}" disabled/>
</label>
<label class="optional">
Hersteller
<input type="text" name="kitManufacturer" th:value="${labdata.profileData.kitManufacturer}" disabled/>
</label>
</div>
<div>
<label class="optional">
Enrichment Kit - Name und Version
<input type="text" name="enrichmentKit" th:value="${labdata.profileData.enrichmentKit}" disabled />
</label>
<label class="optional">
Hersteller
<select name="enrichmentKitManufacturer" disabled>
<option th:selected="${labdata.profileData.enrichmentKitManufacturer != null and labdata.profileData.enrichmentKitManufacturer.value == 'Illumina'}" value="ILLUMINA">Illumina</option>
<option th:selected="${labdata.profileData.enrichmentKitManufacturer != null and labdata.profileData.enrichmentKitManufacturer.value == 'Agilent'}" value="AGILENT">Agilent</option>
<option th:selected="${labdata.profileData.enrichmentKitManufacturer != null and labdata.profileData.enrichmentKitManufacturer.value == 'Twist'}" value="TIST">Twist</option>
<option th:selected="${labdata.profileData.enrichmentKitManufacturer != null and labdata.profileData.enrichmentKitManufacturer.value == 'NEB'}" value="NEB">NEB</option>
<option th:selected="${labdata.profileData.enrichmentKitManufacturer != null and labdata.profileData.enrichmentKitManufacturer.value == 'other'}" value="OTHER">other</option>
<option th:selected="${labdata.profileData.enrichmentKitManufacturer != null and labdata.profileData.enrichmentKitManufacturer.value == 'unknown'}" value="UNKNOWN">unknown</option>
<option th:selected="${labdata.profileData.enrichmentKitManufacturer != null and labdata.profileData.enrichmentKitManufacturer.value == 'none'}" value="NONE">none</option>
</select>
</label>
</div>
</th:block>
<div> <div>
<label> <label>
Sequencing Layout Sequencing Layout
<select name="sequencingLayout"> <select name="sequencingLayout">
<option th:selected="${labdata.sequencingLayout != null and labdata.sequencingLayout.value == 'SINGLE_END'}" value="SINGLE_END">single-end</option> <option th:selected="${labdata.sequencingLayout != null and labdata.sequencingLayout.value == 'single-end'}" value="SINGLE_END">single-end</option>
<option th:selected="${labdata.sequencingLayout != null and labdata.sequencingLayout.value == 'PAIRED_END'}" value="PAIRED_END">paired-end</option> <option th:selected="${labdata.sequencingLayout != null and labdata.sequencingLayout.value == 'paired-end'}" value="PAIRED_END">paired-end</option>
<option th:selected="${labdata.sequencingLayout != null and labdata.sequencingLayout.value == 'REVERSE'}" value="REVERSE">reverse</option> <option th:selected="${labdata.sequencingLayout != null and labdata.sequencingLayout.value == 'reverse'}" value="REVERSE">reverse</option>
<option th:selected="${labdata.sequencingLayout != null and labdata.sequencingLayout.value == 'OTHER'}" value="OTHER">other</option> <option th:selected="${labdata.sequencingLayout != null and labdata.sequencingLayout.value == 'other'}" value="OTHER">other</option>
</select> </select>
</label> </label>
</div> </div>
@ -185,10 +273,10 @@
<label> <label>
Methode Methode
<select name="tumorCellCountMethod"> <select name="tumorCellCountMethod">
<option th:selected="${labdata.tumorCellCountMethod != null and labdata.tumorCellCountMethod.value == 'PATHOLOGY'}" value="PATHOLOGY">pathology</option> <option th:selected="${labdata.tumorCellCountMethod != null and labdata.tumorCellCountMethod.value == 'pathology'}" value="PATHOLOGY">pathology</option>
<option th:selected="${labdata.tumorCellCountMethod != null and labdata.tumorCellCountMethod.value == 'BIOINFORMATICS'}" value="BIOINFORMATICS">bioinformatics</option> <option th:selected="${labdata.tumorCellCountMethod != null and labdata.tumorCellCountMethod.value == 'bioinformatics'}" value="BIOINFORMATICS">bioinformatics</option>
<option th:selected="${labdata.tumorCellCountMethod != null and labdata.tumorCellCountMethod.value == 'OTHER'}" value="OTHER">other</option> <option th:selected="${labdata.tumorCellCountMethod != null and labdata.tumorCellCountMethod.value == 'other'}" value="OTHER">other</option>
<option th:selected="${labdata.tumorCellCountMethod != null and labdata.tumorCellCountMethod.value == 'UNKNOWN'}" value="UNKNOWN">unknown</option> <option th:selected="${labdata.tumorCellCountMethod != null and labdata.tumorCellCountMethod.value == 'unknown'}" value="UNKNOWN">unknown</option>
</select> </select>
</label> </label>
</div> </div>
@ -209,8 +297,8 @@
<label> <label>
Referenz-Genom Referenz-Genom
<select name="referenceGenome"> <select name="referenceGenome">
<option th:selected="${labdata.referenceGenome != null and labdata.referenceGenome.value == 'GRCH37'}" value="GRCH37">GRCh37</option> <option th:selected="${labdata.referenceGenome != null and labdata.referenceGenome.value == 'GRCh37'}" value="GRCH37">GRCh37</option>
<option th:selected="${labdata.referenceGenome != null and labdata.referenceGenome.value == 'GRCH38'}" value="GRCH38">GRCh38</option> <option th:selected="${labdata.referenceGenome != null and labdata.referenceGenome.value == 'GRCh38'}" value="GRCH38">GRCh38</option>
</select> </select>
</label> </label>
</div> </div>