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feat: add migration files for postgresql

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Paul-Christian Volkmer
2025-06-09 17:34:00 +02:00
parent 20a07ef433
commit 8712433b37
2 changed files with 82 additions and 0 deletions
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17
src/main/resources/db/migrations/postgresql/V0_1_0_1__LabDataProfiles.sql Normal file
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CREATE TABLE IF NOT EXISTS tbl_lab_data_profile
(
id serial,
profile_name varchar(255),
library_type varchar(255),
library_prep_kit varchar(255) not null,
library_prep_kit_manufacturer varchar(255) not null,
sequencer_model varchar(255) not null,
sequencer_manufacturer varchar(255) not null,
kit_name varchar(255) not null,
kit_manufacturer varchar(255) not null,
enrichment_kit varchar(255) not null,
enrichment_kit_manufacturer varchar(255),
PRIMARY KEY (id)
);
ALTER TABLE tbl_lab_data ADD COLUMN profile int;

65
src/main/resources/db/migrations/postgresql/V0_1_0__Init.sql Normal file
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CREATE TABLE IF NOT EXISTS tbl_case
(
id serial,
local_case_id varchar(255) not null,
coverage_type varchar(255) not null,
submitter_id varchar(16) not null,
genomic_data_center_id varchar(16) not null,
clinical_data_center_id varchar(16) not null,
disease_type varchar(24),
genomic_study_type varchar(24),
genomic_study_subtype varchar(24),
lab_name varchar(255) not null,
PRIMARY KEY (id)
);
CREATE TABLE IF NOT EXISTS tbl_donor
(
id serial,
case_id int,
donor_pseudonym varchar(255) not null,
gender varchar(16),
relation varchar(16),
PRIMARY KEY (id)
);
CREATE TABLE IF NOT EXISTS tbl_lab_data
(
id serial,
donor_id int,
einsendenummer varchar(255) unique,
lab_data_name varchar(255) not null,
sample_date varchar(16) not null,
sample_conservation varchar(255),
sequence_type varchar(255),
sequence_subtype varchar(255),
fragmentation_method varchar(255),
library_type varchar(255),
library_prep_kit varchar(255) not null,
library_prep_kit_manufacturer varchar(255) not null,
sequencer_model varchar(255) not null,
sequencer_manufacturer varchar(255) not null,
kit_name varchar(255) not null,
kit_manufacturer varchar(255) not null,
enrichment_kit varchar(255) not null,
enrichment_kit_manufacturer varchar(255),
sequencing_layout varchar(255),
tumor_cell_count int,
tumor_cell_count_method varchar(255),
bioinformatics_pipeline_name varchar(255) not null,
bioinformatics_pipeline_version varchar(255) not null,
reference_genome varchar(8),
PRIMARY KEY (id)
);
CREATE TABLE IF NOT EXISTS tbl_file
(
id serial,
lab_data_id int,
file_path varchar(255) unique,
file_type varchar(8),
file_checksum varchar(64) unique,
file_size_in_bytes int,
PRIMARY KEY (id)
);