feat: instant replace kit data

src/main/kotlin/dev/pcvolkmer/onco/grzmetadataprocessor/data/LabData.kt

@@ -108,6 +108,7 @@ enum class ReferenceGenome(val value: String) {
 }
 
 interface LabDataRepository : CrudRepository<LabData, Long> {
+    fun getById(id: Long): LabData?
     fun findByDonorId(donorId: Long): MutableList<LabData>
     fun countLabDataByDonorIdIsNull(): Long
     fun findByEinsendenummer(einsendenummer: String): LabData

src/main/kotlin/dev/pcvolkmer/onco/grzmetadataprocessor/web/LabDataController.kt

@@ -18,7 +18,13 @@ class LabDataController(
     fun getAllLabData(@PathVariable donorId: Long, model: Model): String {
         model.addAttribute("labdatas", allLabDatasByDonorId(donorId))
         model.addAttribute("labdataprofiles", labDataProfileRepository.findAll())
-        return "labdatas"
+        return "labdatas/index"
+    }
+
+    @GetMapping(path = ["{labdataId}/kits"])
+    fun getLabDataKits(@PathVariable labdataId: Long, model: Model): String {
+        model.addAttribute("labdata", labDataRepository.getById(labdataId))
+        return "labdatas/kits"
     }
 
     @PostMapping
@@ -26,7 +32,7 @@ class LabDataController(
         labDataRepository.save(LabData(donorId = donorId))
         model.addAttribute("labdatas", allLabDatasByDonorId(donorId))
         model.addAttribute("labdataprofiles", labDataProfileRepository.findAll())
-        return "labdatas"
+        return "labdatas/index"
     }
 
     @PutMapping(path = ["{labdataId}"])
@@ -34,7 +40,7 @@ class LabDataController(
         labDataRepository.save(labData)
         model.addAttribute("labdatas", allLabDatasByDonorId(donorId))
         model.addAttribute("labdataprofiles", labDataProfileRepository.findAll())
-        return "labdatas"
+        return "labdatas/index"
     }
 
     @DeleteMapping(path = ["{labdataId}"])
@@ -42,7 +48,7 @@ class LabDataController(
         labDataRepository.deleteById(labdataId)
         model.addAttribute("labdatas", allLabDatasByDonorId(donorId))
         model.addAttribute("labdataprofiles", labDataProfileRepository.findAll())
-        return "labdatas"
+        return "labdatas/index"
     }
 
     private fun allLabDatasByDonorId(donorId: Long): List<LabData> {

src/main/kotlin/dev/pcvolkmer/onco/grzmetadataprocessor/web/LabDataProfileController.kt

@@ -2,6 +2,7 @@ package dev.pcvolkmer.onco.grzmetadataprocessor.web
 
 import dev.pcvolkmer.onco.grzmetadataprocessor.data.LabDataProfile
 import dev.pcvolkmer.onco.grzmetadataprocessor.data.LabDataProfileRepository
+import org.springframework.data.repository.findByIdOrNull
 import org.springframework.stereotype.Controller
 import org.springframework.ui.Model
 import org.springframework.web.bind.annotation.*
@@ -14,7 +15,6 @@ class LabDataProfileController(
 
     @GetMapping
     fun getAllLabDataProfiles(model: Model): String {
-        println(repository.findAll().sortedByDescending { it.id })
         model.addAttribute("labdataprofiles", repository.findAll().sortedByDescending { it.id })
         return "labdataprofiles"
     }
@@ -26,15 +26,21 @@ class LabDataProfileController(
         return "labdataprofiles"
     }
 
+    @GetMapping(path = ["{labdataProfileId}"])
+    fun getLabDataProfile(@PathVariable labdataProfileId: Long, model: Model): String {
+        model.addAttribute("profile", repository.findByIdOrNull(labdataProfileId))
+        return "labdataprofile"
+    }
+
     @PutMapping(path = ["{labdataProfileId}"])
-    fun putLabData(@PathVariable labdataProfileId: Long, labDataProfile: LabDataProfile, model: Model): String {
+    fun putLabDataProfile(@PathVariable labdataProfileId: Long, labDataProfile: LabDataProfile, model: Model): String {
         repository.save(labDataProfile)
         model.addAttribute("labdataprofiles", repository.findAll().sortedByDescending { it.id })
         return "labdataprofiles"
     }
 
     @DeleteMapping(path = ["{labdataProfileId}"])
-    fun deleteLabData(@PathVariable labdataProfileId: Long, model: Model): String {
+    fun deleteLabDataProfile(@PathVariable labdataProfileId: Long, model: Model): String {
         repository.deleteById(labdataProfileId)
         model.addAttribute("labdataprofiles", repository.findAll().sortedByDescending { it.id })
         return "labdataprofiles"

src/main/resources/templates/casemenu.html

@@ -2,7 +2,7 @@
 
 <nav>
     <b>Falldaten</b>
-    <ul>
+    <ul class="datamenu">
         <li>
             <a th:href="@{/}">
                 <span>Fallübersicht</span>
@@ -23,7 +23,7 @@
         </li>
     </ul>
     <b>Profile</b>
-    <ul>
+    <ul class="settingsmenu">
         <li>
             <a th:href="@{/labdataprofiles}">
                 <span>Sequenzierprofile</span>

src/main/resources/templates/labdataprofile.html

@@ -0,0 +1,82 @@
+<!DOCTYPE html>
+<html lang="de" xmlns="http://www.w3.org/1999/html" xmlns:th="http://www.thymeleaf.org">
+<head>
+    <meta charset="UTF-8">
+    <title>Title</title>
+</head>
+<body>
+    <div>
+        <label class="disabled">
+            Library Type
+            <select name="libraryType" disabled>
+                <option th:selected="${profile.libraryType != null and profile.libraryType.value == 'panel'}" value="PANEL">panel</option>
+                <option th:selected="${profile.libraryType != null and profile.libraryType.value == 'panel_lr'}" value="PANEL_LR">panel_lr</option>
+                <option th:selected="${profile.libraryType != null and profile.libraryType.value == 'wes'}" value="WES">wes</option>
+                <option th:selected="${profile.libraryType != null and profile.libraryType.value == 'wes_lr'}" value="WES_LR">wes_lr</option>
+                <option th:selected="${profile.libraryType != null and profile.libraryType.value == 'wgs'}" value="WGS">wgs</option>
+                <option th:selected="${profile.libraryType != null and profile.libraryType.value == 'wgs_lr'}" value="WGS_LR">wgs_lr</option>
+                <option th:selected="${profile.libraryType != null and profile.libraryType.value == 'wxs'}" value="WXS">wxs</option>
+                <option th:selected="${profile.libraryType != null and profile.libraryType.value == 'wxs_lr'}" value="WXS_LR">wxs_lr</option>
+                <option th:selected="${profile.libraryType != null and profile.libraryType.value == 'other'}" value="OTHER">other</option>
+                <option th:selected="${profile.libraryType != null and profile.libraryType.value == 'unknown'}" value="UNKNOWN">unknown</option>
+            </select>
+        </label>
+    </div>
+
+    <div>
+        <label class="disabled">
+            Preparation Kit - Name
+            <input type="text" name="libraryPrepKit" th:value="${profile.libraryPrepKit}" disabled />
+        </label>
+
+        <label class="disabled">
+            Hersteller
+            <input type="text" name="libraryPrepKitManufacturer" th:value="${profile.libraryPrepKitManufacturer}" disabled />
+        </label>
+    </div>
+
+    <div>
+        <label class="disabled">
+            Sequencer - Modell
+            <input type="text" name="sequencerModel" th:value="${profile.sequencerModel}" disabled />
+        </label>
+
+        <label class="disabled">
+            Hersteller
+            <input type="text" name="sequencerManufacturer" th:value="${profile.sequencerManufacturer}" disabled />
+        </label>
+    </div>
+
+    <div>
+        <label class="disabled">
+            Kit - Name/Version
+            <input type="text" name="kitName" th:value="${profile.kitName}" disabled />
+        </label>
+
+        <label class="disabled">
+            Hersteller
+            <input type="text" name="kitManufacturer" th:value="${profile.kitManufacturer}" disabled />
+        </label>
+    </div>
+
+    <div>
+        <label class="disabled">
+            Enrichment Kit - Name und Version
+            <input type="text" name="enrichmentKit" th:value="${profile.enrichmentKit}" disabled />
+        </label>
+
+        <label class="disabled">
+            Hersteller
+            <select name="enrichmentKitManufacturer" disabled>
+                <option th:selected="${profile.enrichmentKitManufacturer != null and profile.enrichmentKitManufacturer.value == 'Illumuna'}" value="ILLUMINA">Illumina</option>
+                <option th:selected="${profile.enrichmentKitManufacturer != null and profile.enrichmentKitManufacturer.value == 'Agilent'}" value="AGILENT">Agilent</option>
+                <option th:selected="${profile.enrichmentKitManufacturer != null and profile.enrichmentKitManufacturer.value == 'Twist'}" value="TIST">Twist</option>
+                <option th:selected="${profile.enrichmentKitManufacturer != null and profile.enrichmentKitManufacturer.value == 'NEB'}" value="NEB">NEB</option>
+                <option th:selected="${profile.enrichmentKitManufacturer != null and profile.enrichmentKitManufacturer.value == 'other'}" value="OTHER">other</option>
+                <option th:selected="${profile.enrichmentKitManufacturer != null and profile.enrichmentKitManufacturer.value == 'unknown'}" value="UNKNOWN">unknown</option>
+                <option th:selected="${profile.enrichmentKitManufacturer != null and profile.enrichmentKitManufacturer.value == 'none'}" value="NONE">none</option>
+            </select>
+        </label>
+    </div>
+</body>
+</html>

src/main/resources/templates/labdatas/index.html

@@ -93,14 +93,18 @@
                 <div>
                     <label class="optional">
                         Sequenzierprofil (Optionale Angabe)
-                        <select name="profile">
+                        <select name="profile" th:hx-target="${'#labdata_' + labdata.id + '_sequencerprofile'}">
-                            <option value="">Kein Sequenzierprofil</option>
+                            <option value="" th:hx-get="@{/donors/{donorId}/labdatas/{labdataId}/kits(donorId=${donorId},labdataId=${labdata.id})}">Kein Sequenzierprofil</option>
-                            <option th:each="labdataprofile : ${labdataprofiles}" th:selected="${labdataprofile.id == labdata.profile}" th:value="${labdataprofile.id}" th:text="${labdataprofile.profileName}"></option>
+                            <option th:each="labdataprofile : ${labdataprofiles}"
+                                    th:selected="${labdataprofile.id == labdata.profile}"
+                                    th:hx-get="@{/labdataprofiles/{labdataprofileId}(labdataprofileId=${labdataprofile.id})}"
+                                    th:value="${labdataprofile.id}"
+                                    th:text="${labdataprofile.profileName}"></option>
                         </select>
                     </label>
                 </div>
 
-                <th:block th:if="${labdata.profileData == null}">
+                <div th:if="${labdata.profileData == null}" th:id="${'labdata_' + labdata.id + '_sequencerprofile'}">
                 <div>
                     <label>
                         Library Type
@@ -174,11 +178,11 @@
                         </select>
                     </label>
                 </div>
-                </th:block>
+                </div>
 
-                <th:block th:if="${labdata.profileData != null}">
+                <div th:if="${labdata.profileData != null}" th:id="${'labdata_' + labdata.id + '_sequencerprofile'}">
                     <div>
-                        <label class="optional">
+                        <label class="disabled">
                             Library Type
                             <select name="libraryType" disabled>
                                 <option th:selected="${labdata.profileData.libraryType != null and labdata.profileData.libraryType.value == 'panel'}" value="PANEL">panel</option>
@@ -196,48 +200,48 @@
                     </div>
 
                     <div>
-                        <label class="optional">
+                        <label class="disabled">
                             Preparation Kit - Name
                             <input type="text" name="libraryPrepKit" th:value="${labdata.profileData.libraryPrepKit}" disabled/>
                         </label>
 
-                        <label class="optional">
+                        <label class="disabled">
                             Hersteller
                             <input type="text" name="libraryPrepKitManufacturer" th:value="${labdata.profileData.libraryPrepKitManufacturer}" disabled/>
                         </label>
                     </div>
 
                     <div>
-                        <label class="optional">
+                        <label class="disabled">
                             Sequencer - Modell
                             <input type="text" name="sequencerModel" th:value="${labdata.profileData.sequencerModel}" disabled/>
                         </label>
 
-                        <label class="optional">
+                        <label class="disabled">
                             Hersteller
                             <input type="text" name="sequencerManufacturer" th:value="${labdata.profileData.sequencerManufacturer}" disabled/>
                         </label>
                     </div>
 
                     <div>
-                        <label class="optional">
+                        <label class="disabled">
                             Kit - Name/Version
                             <input type="text" name="kitName" th:value="${labdata.profileData.kitName}" disabled/>
                         </label>
 
-                        <label class="optional">
+                        <label class="disabled">
                             Hersteller
                             <input type="text" name="kitManufacturer" th:value="${labdata.profileData.kitManufacturer}" disabled/>
                         </label>
                     </div>
 
                     <div>
-                        <label class="optional">
+                        <label class="disabled">
                             Enrichment Kit - Name und Version
                             <input type="text" name="enrichmentKit" th:value="${labdata.profileData.enrichmentKit}" disabled />
                         </label>
 
-                        <label class="optional">
+                        <label class="disabled">
                             Hersteller
                             <select name="enrichmentKitManufacturer" disabled>
                                 <option th:selected="${labdata.profileData.enrichmentKitManufacturer != null and labdata.profileData.enrichmentKitManufacturer.value == 'Illumina'}" value="ILLUMINA">Illumina</option>
@@ -250,7 +254,7 @@
                             </select>
                         </label>
                     </div>
-                </th:block>
+                </div>
 
                 <div>
                     <label>

src/main/resources/templates/labdatas/kits.html

@@ -0,0 +1,82 @@
+<!DOCTYPE html>
+<html lang="de" xmlns="http://www.w3.org/1999/html" xmlns:th="http://www.thymeleaf.org">
+<head>
+    <meta charset="UTF-8">
+    <title>Title</title>
+</head>
+<body>
+    <div>
+        <label>
+            Library Type
+            <select name="libraryType">
+                <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'panel'}" value="PANEL">panel</option>
+                <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'panel_lr'}" value="PANEL_LR">panel_lr</option>
+                <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wes'}" value="WES">wes</option>
+                <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wes_lr'}" value="WES_LR">wes_lr</option>
+                <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wgs'}" value="WGS">wgs</option>
+                <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wgs_lr'}" value="WGS_LR">wgs_lr</option>
+                <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wxs'}" value="WXS">wxs</option>
+                <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'wxs_lr'}" value="WXS_LR">wxs_lr</option>
+                <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'other'}" value="OTHER">other</option>
+                <option th:selected="${labdata.libraryType != null and labdata.libraryType.value == 'unknown'}" value="UNKNOWN">unknown</option>
+            </select>
+        </label>
+    </div>
+
+    <div>
+        <label>
+            Preparation Kit - Name
+            <input type="text" name="libraryPrepKit" th:value="${labdata.libraryPrepKit}" />
+        </label>
+
+        <label>
+            Hersteller
+            <input type="text" name="libraryPrepKitManufacturer" th:value="${labdata.libraryPrepKitManufacturer}" />
+        </label>
+    </div>
+
+    <div>
+        <label>
+            Sequencer - Modell
+            <input type="text" name="sequencerModel" th:value="${labdata.sequencerModel}" />
+        </label>
+
+        <label>
+            Hersteller
+            <input type="text" name="sequencerManufacturer" th:value="${labdata.sequencerManufacturer}" />
+        </label>
+    </div>
+
+    <div>
+        <label>
+            Kit - Name/Version
+            <input type="text" name="kitName" th:value="${labdata.kitName}" />
+        </label>
+
+        <label>
+            Hersteller
+            <input type="text" name="kitManufacturer" th:value="${labdata.kitManufacturer}" />
+        </label>
+    </div>
+
+    <div>
+        <label>
+            Enrichment Kit - Name und Version
+            <input type="text" name="enrichmentKit" th:value="${labdata.enrichmentKit}" />
+        </label>
+
+        <label>
+            Hersteller
+            <select name="enrichmentKitManufacturer">
+                <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'Illumuna'}" value="ILLUMINA">Illumina</option>
+                <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'Agilent'}" value="AGILENT">Agilent</option>
+                <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'Twist'}" value="TIST">Twist</option>
+                <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'NEB'}" value="NEB">NEB</option>
+                <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'other'}" value="OTHER">other</option>
+                <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'unknown'}" value="UNKNOWN">unknown</option>
+                <option th:selected="${labdata.enrichmentKitManufacturer != null and labdata.enrichmentKitManufacturer.value == 'none'}" value="NONE">none</option>
+            </select>
+        </label>
+    </div>
+</body>
+</html>

src/main/web/style.css

@@ -9,7 +9,7 @@ aside {
 }
 
 aside > .title {
-    @apply m-2 text-2xl font-bold
+    @apply my-2 text-2xl font-bold
 }
 
 aside > nav {
@@ -17,10 +17,10 @@ aside > nav {
 }
 
 aside > nav ul {
-    @apply m-2
+    @apply my-2
 }
 
-aside > nav a:before {
+aside > nav ul.datamenu a:before {
     content: '🗎';
     margin-right: 4px;
     opacity: 0.8;
@@ -28,6 +28,14 @@ aside > nav a:before {
     text-align: center;
 }
 
+aside > nav ul.settingsmenu a:before {
+    content: '⚙';
+    margin-right: 4px;
+    opacity: 0.8;
+    width: 1.2em;
+    text-align: center;
+}
+
 aside > nav a:hover:before {
     opacity: 1;
 }
@@ -94,6 +102,13 @@ label.optional select {
     background: repeating-linear-gradient(135deg, var(--color-white), var(--color-white) 4px, transparent 4px, transparent 8px)
 }
 
+label.disabled input,
+label.disabled select {
+    @apply text-gray-600;
+    font-style: normal;
+    background: repeating-linear-gradient(135deg, var(--color-white), var(--color-white) 4px, transparent 4px, transparent 8px)
+}
+
 input[type=text],
 input[type=date],
 input[type=number],