fix: do not set unexpected config values (#141)

The main purpose is to abandon bitnami kafka image.

The examples now include localhost certs and keys for development
purposes only.
More advanced support for SSL connections to kafka will be
available in later versions.

dev-compose.yml

@@ -1,26 +1,121 @@
 services:
   kafka:
-    image: bitnami/kafka
+    image: apache/kafka
     hostname: kafka
     ports:
       - "9092:9092"
       - "9094:9094"
     environment:
       ALLOW_PLAINTEXT_LISTENER: "yes"
-      KAFKA_CFG_NODE_ID: "0"
+      KAFKA_NODE_ID: "0"
-      KAFKA_CFG_PROCESS_ROLES: "controller,broker"
+      KAFKA_KRAFT_CLUSTER_ID: "mv64e-etl-processor-dev"
-      KAFKA_CFG_LISTENERS: PLAINTEXT://:9092,CONTROLLER://:9093,EXTERNAL://:9094
+      KAFKA_CONTROLLER_QUORUM_VOTERS: 0@kafka:9093
-      KAFKA_CFG_ADVERTISED_LISTENERS: PLAINTEXT://kafka:9092,EXTERNAL://localhost:9094
+      KAFKA_PROCESS_ROLES: "controller,broker"
-      KAFKA_CFG_LISTENER_SECURITY_PROTOCOL_MAP: CONTROLLER:PLAINTEXT,EXTERNAL:PLAINTEXT,PLAINTEXT:PLAINTEXT
+      KAFKA_CONTROLLER_LISTENER_NAMES: CONTROLLER
-      KAFKA_CFG_INTER_BROKER_LISTENER_NAME: PLAINTEXT
+      KAFKA_INTER_BROKER_LISTENER_NAME: PLAINTEXT
-      KAFKA_CFG_AUTO_CREATE_TOPICS_ENABLE: true
+      KAFKA_OFFSETS_TOPIC_REPLICATION_FACTOR: "1"
-      KAFKA_CFG_CONTROLLER_QUORUM_VOTERS: 0@kafka:9093
+      KAFKA_TRANSACTION_STATE_LOG_REPLICATION_FACTOR: "1"
-      KAFKA_CFG_CONTROLLER_LISTENER_NAMES: CONTROLLER
+      KAFKA_TRANSACTION_STATE_LOG_MIN_ISR: "1"
-    healthcheck:
+      KAFKA_GROUP_INITIAL_REBALANCE_DELAY_MS: "0"
-      test: kafka-topics --bootstrap-server kafka:9092 --list
+      KAFKA_AUTO_CREATE_TOPICS_ENABLE: "true"
-      interval: 30s
+      # Without SSL
-      timeout: 10s
+      KAFKA_LISTENERS: PLAINTEXT://:9092,CONTROLLER://:9093,EXTERNAL://:9094
-      retries: 3
+      KAFKA_ADVERTISED_LISTENERS: PLAINTEXT://kafka:9092,EXTERNAL://localhost:9094
+      KAFKA_LISTENER_SECURITY_PROTOCOL_MAP: CONTROLLER:PLAINTEXT,EXTERNAL:PLAINTEXT,PLAINTEXT:PLAINTEXT
+      # Using SSL
+#      KAFKA_LISTENERS: PLAINTEXT://:9092,CONTROLLER://:9093,EXTERNAL://:9094
+#      KAFKA_ADVERTISED_LISTENERS: PLAINTEXT://kafka:9092,EXTERNAL://localhost:9094
+#      KAFKA_LISTENER_SECURITY_PROTOCOL_MAP: CONTROLLER:PLAINTEXT,EXTERNAL:SSL,PLAINTEXT:PLAINTEXT
+#      KAFKA_SSL_KEYSTORE_TYPE: "PEM"
+#      KAFKA_SSL_KEYSTORE_CERTIFICATE_CHAIN: -----BEGIN CERTIFICATE-----
+#        MIIDCzCCAfOgAwIBAgIUaXNh4PahaKeLUaab2rUPSVESx28wDQYJKoZIhvcNAQEL
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+#        UAjzKxxysId1Vdvtbbwgli6UgfPwlzFP2Wlw51h496yL4QU/9tNV956UJ1RoS/fG
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+#        DgQWBBT2S/C2++ECY+CSuN5KKql0umfbTDAfBgNVHSMEGDAWgBT2S/C2++ECY+CS
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+#        8tTDVXQn08BT9H3jZTnF
+#        -----END CERTIFICATE-----
+#        -----BEGIN CERTIFICATE-----
+#        MIIC+TCCAeGgAwIBAgIUUoCwz8GS6xQ3mmI7RUUYSNPIOi4wDQYJKoZIhvcNAQEL
+#        BQAwFTETMBEGA1UEAwwKRXhhbXBsZSBDQTAeFw0yNTA4MjExODE0NDhaFw0zNTA4
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+#        y3xOqXoxxOhZu06yd3nymorqeTgbF1fW8wQF0u3KsFECAwEAAaNCMEAwHQYDVR0O
+#        BBYEFHk9jMWRAAt2YsBSxUcOQVoWayoHMB8GA1UdIwQYMBaAFPZL8Lb74QJj4JK4
+#        3koqqXS6Z9tMMA0GCSqGSIb3DQEBCwUAA4IBAQBqabAA9INONDaLHqs9i9YQHm/g
+#        AnB7xRl/RFbERKKCTSMZUYM8oEaaH0W2ENoPMc/7xOB/R8a7Rm62PTr6syxwhZrY
+#        5NtGKJOD+rh90/5l83tulf93KqOJtGkiv6NBDvCNrITcA+UKRk/z4GcFi2YjWAl4
+#        wvY44lzTasMKSpjUQ5N0VNANcW3nVuEgPQ8rrr0NOK/5j4guPjsXDsixa47gqblA
+#        5xGfBKeVmEXdPbzawZfP4hPIw7DpX2m8Y0erswF1ZxkIV73V3TDsFSLcqSKSzZr6
+#        mtj8COlV9Us7zqaJbV5eOl7GN1T9orZJwZmX1Z46gCkkSLYDP/dqtl2j9JgN
+#        -----END CERTIFICATE-----
+#      KAFKA_SSL_KEYSTORE_KEY: -----BEGIN PRIVATE KEY-----
+#        MIIEvQIBADANBgkqhkiG9w0BAQEFAASCBKcwggSjAgEAAoIBAQC/T1vfTIYQcHRJ
+#        kx8mYH54X068WT6zVOs9VHVfG/Ni5N6e+aPHgimvYjneww0JaO+YUAYYV9Pl3N5r
+#        nK7LceafE2BTG8qYn/KI1odyzPvj/Lc93s0GZavOsnMiqZvHapQNN29tu7RQ34mE
+#        3r9ng9hzeNAVO8gwGIYanf0FvPjFdo5HERr+XBNtRmcVpj1KZFTfmzaAQvB/dFpp
+#        Ek/dC33mBfsGZ5bACWR+gEM0dRpxgyAhOXrzIQu/Ib0Z6YHgN9dEssbLGRIoJHjy
+#        +ZU2TgT2NiLswai9OWoMlU4lauF3est8Tql6McToWbtOsnd58pqK6nk4GxdX1vME
+#        BdLtyrBRAgMBAAECggEAC1wXfPlqxoQe65WAVoOJTvV90+JKvlRPCZu/wm+C8r7b
+#        Vz5Ekt6wQflHrWoQlpv0CivKSNzCONZ2IJazrGHti0mXwSeXzptEyApRDaiNVnrV
+#        mKdnrjcQThw7iPXgSaWS9/vwMmhgayLy5ABkBi4GhsjINlKP7wctw1vZP+N6NCNd
+#        Ql3taStvDKmG0SfJHF6/2o/XBpof3IJEL7ghbzyTTbWWaO34J1mJ8A+AmjGhj9GE
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+#        CcKMOG/FxhmDyP5I29DhJRhvERIpJd0kcSDQOgtaoVPC1XzIlyTqte6nGX9kAnA/
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+#        fcfgTiQaXRJmlVx6jfbfZd4=
+#        -----END PRIVATE KEY-----
+#      #KAFKA_SSL_KEYSTORE_CREDENTIALS: example
+#      KAFKA_SSL_KEY_CREDENTIALS: example
+#      KAFKA_SSL_TRUSTSTORE_TYPE: "PEM"
+#      KAFKA_SSL_TRUSTSTORE_CERTIFICATES: -----BEGIN CERTIFICATE-----
+#        MIIDCzCCAfOgAwIBAgIUaXNh4PahaKeLUaab2rUPSVESx28wDQYJKoZIhvcNAQEL
+#        BQAwFTETMBEGA1UEAwwKRXhhbXBsZSBDQTAeFw0yNTA4MjExODEyMTFaFw0zNTA4
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+#        8tTDVXQn08BT9H3jZTnF
+#        -----END CERTIFICATE-----
+#      KAFKA_SSL_CLIENT_AUTH: none
+      ###
 
   ## Use AKHQ as Kafka web frontend
   akhq:

src/main/kotlin/dev/dnpm/etl/processor/input/KafkaInputListener.kt

@@ -31,6 +31,7 @@ import org.apache.kafka.clients.consumer.ConsumerRecord
 import org.slf4j.LoggerFactory
 import org.springframework.http.MediaType
 import org.springframework.kafka.listener.MessageListener
+import java.nio.charset.Charset
 
 class KafkaInputListener(
     private val requestProcessor: RequestProcessor,
@@ -49,19 +50,16 @@ class KafkaInputListener(
         }
     }
 
-    private fun guessMimeType(record: ConsumerRecord<String, String>): String {
+    private fun guessMimeType(record: ConsumerRecord<String, String>): String? {
         if (record.headers().headers("contentType").toList().isEmpty()) {
             // Fallback if no contentType set (old behavior)
             return MediaType.APPLICATION_JSON_VALUE
         }
 
-        return record.headers().headers("contentType")?.firstOrNull()?.value().contentToString()
+        return record.headers().headers("contentType")?.firstOrNull()?.value()?.toString(Charset.forName("UTF-8"))
     }
 
     private fun handleDnpmV2Message(record: ConsumerRecord<String, String>) {
-        // Do not handle DNPM-V2 for now
-        logger.warn("Ignoring MTB File in DNPM V2 format: Not implemented yet")
-
         val mtbFile = objectMapper.readValue(record.value(), Mtb::class.java)
         val patientId = PatientId(mtbFile.patient.id)
         val firstRequestIdHeader = record.headers().headers("requestId")?.firstOrNull()

src/main/resources/application-dev.yml

@@ -18,13 +18,107 @@ spring:
             issuer-uri: https://dnpm.dev/auth/realms/intern
             user-name-attribute: name
 
+#  kafka:
+#    security:
+#      protocol: "SSL"
+#    ssl:
+#      key-store-type: "PEM"
+#      key-store-certificate-chain: -----BEGIN CERTIFICATE-----
+#        MIIDCzCCAfOgAwIBAgIUaXNh4PahaKeLUaab2rUPSVESx28wDQYJKoZIhvcNAQEL
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+#        8tTDVXQn08BT9H3jZTnF
+#        -----END CERTIFICATE-----
+#        -----BEGIN CERTIFICATE-----
+#        MIIC+TCCAeGgAwIBAgIUUoCwz8GS6xQ3mmI7RUUYSNPIOi4wDQYJKoZIhvcNAQEL
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+#        mtj8COlV9Us7zqaJbV5eOl7GN1T9orZJwZmX1Z46gCkkSLYDP/dqtl2j9JgN
+#        -----END CERTIFICATE-----
+#      ### For dev/testing purposes only!
+#      key-store-key: -----BEGIN PRIVATE KEY-----
+#        MIIEvQIBADANBgkqhkiG9w0BAQEFAASCBKcwggSjAgEAAoIBAQC/T1vfTIYQcHRJ
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+#        CcKMOG/FxhmDyP5I29DhJRhvERIpJd0kcSDQOgtaoVPC1XzIlyTqte6nGX9kAnA/
+#        x/OOXrZ0hjhMNDcZzf2NasPYJQKBgQDYGqTobkVBk+eekNWklnTh41/649rUIgTu
+#        JStArtY2hgaEInYcGa2e7cEj7nIHA0iGy3EJ2yvwoUIyxtoXVcGohu2IrzlhS33T
+#        R4jA7nE2/yHZrEMEJovuSU0eMw7rgvEtL79Q0RToYnTY1EU6X/BBoFfiiEeNMHKz
+#        zjDOOQ6ZvQKBgGCWChIc0FSkwYiPtPZ9PCn89XCjk/cIPkYfiF9fT5Ydeh9pv4Fp
+#        8SI8yXi3HgMnGhDCV65eagqztGMEky3voO2X4/MbQaaL0+wDWxuJbsdvNBk7XOt6
+#        F20HP+2JUiR4Ti1DVWV+0k5/LG7YJzTXp/KmZQZ2aan4mv8xbn2F4h/NAoGAI4ou
+#        OLN53FEQtHkpSYoc6tFUBZTXdi+qE+g09sxKGmlsROrN9c0bSpnbO6eJRTH7CYAH
+#        tRFAZrB+jI87ar8FvEuEYQhALYoWxVpsWR5drCfFT2EPHG2icavIbQEEoSLFuyKx
+#        Gf9oqtcWVFqEkBcbEg/mpDC5Y7TmCEAOsrubdRkCgYEAl7B+EzIdG0rabGoti09q
+#        QXfyiTjR7nQYkhpLxMCeNlCpQ8Y15XSa8bm1UIGYqj/ZBpeBNhrj64IHoub5Vd43
+#        tzbb8yNgoLUd16TU1VvyccCMGQVPIF8RkDsAtEawV2eoXbHAstN99xbC8jsLNZRQ
+#        fcfgTiQaXRJmlVx6jfbfZd4=
+#        -----END PRIVATE KEY-----
+#      trust-store-type: "PEM"
+#      trust-store-certificates: -----BEGIN CERTIFICATE-----
+#        MIIDCzCCAfOgAwIBAgIUaXNh4PahaKeLUaab2rUPSVESx28wDQYJKoZIhvcNAQEL
+#        BQAwFTETMBEGA1UEAwwKRXhhbXBsZSBDQTAeFw0yNTA4MjExODEyMTFaFw0zNTA4
+#        MTkxODEyMTFaMBUxEzARBgNVBAMMCkV4YW1wbGUgQ0EwggEiMA0GCSqGSIb3DQEB
+#        AQUAA4IBDwAwggEKAoIBAQCsqalqVOLFglVbX9oSHU91ebyL1kPyb/2N90UGQIcD
+#        UAjzKxxysId1Vdvtbbwgli6UgfPwlzFP2Wlw51h496yL4QU/9tNV956UJ1RoS/fG
+#        qBAEHctqavfMI27UQmIzw4pGMkGzEQxRMc6a9pdabBhbMMTJsjtmOv2YMYHj1HHK
+#        Dr7wTBTt2l0eRyCR0kZ8XGIMWhYowPa4EMpC7+4e5Nf/7LSJZWLLy9jXPpazsjkJ
+#        jEmDNlFfx2tZiq0Wz2Xj1pZSDLbcuIX4IHcLfMvagibfrCMX/h6+WuW42sWPRuBW
+#        wB6cHGlXs+K/gBBWxtD7sOTacO5hbHFsfaJOhSEIGoIpAgMBAAGjUzBRMB0GA1Ud
+#        DgQWBBT2S/C2++ECY+CSuN5KKql0umfbTDAfBgNVHSMEGDAWgBT2S/C2++ECY+CS
+#        uN5KKql0umfbTDAPBgNVHRMBAf8EBTADAQH/MA0GCSqGSIb3DQEBCwUAA4IBAQBj
+#        H4DdwqrOHg7sVsqiwDsZfTharpUDCYeG5XhrJQlnA9eKwyofTb929W/fjOwBdDtg
+#        9THT/omR0lA8/UyHtezMT6nMsCn4HG2mXvx6ghgvA3jrFTEY7R80dHkboLMTV3u4
+#        RYgC9S3BJPcbJYpM0cXzkp2T0F4FxWZlfqefuedHuX3zcCxpgVD56qQb2a131TX7
+#        O3UDJfVg8a65IFtehndqILgLVrf7w6+pbmDAlCg5RKrt2USEYyZXYdyTryJbdtn4
+#        BCLp0avYtSYVUGwgH0oUCpkjQRwMg1003TTz8SNnmE7mAXHYljyYejnjL8vBHfch
+#        8tTDVXQn08BT9H3jZTnF
+#        -----END CERTIFICATE-----
+
 app:
   rest:
     uri: http://localhost/api
   #kafka:
-  #  topic: test
-  #  response-topic: test_response
   #  servers: localhost:9094
+  #  group-id: "test1234"
+  #  input-topic: test_input
+  #  output-topic: test_output
+  #  output-response-topic: test_response
   security:
     admin-user: admin
     admin-password: "{noop}very-secret"

src/main/resources/application.yml

@@ -16,7 +16,5 @@ spring:
           content:
             enabled: true
             paths: /**/*.js,/**/*.css,/**/*.svg,/**/*.jpeg
-app:
-  isGenomDeTestSubmission: true
 server:
   forward-headers-strategy: framework

src/test/kotlin/dev/dnpm/etl/processor/input/KafkaInputListenerTest.kt

@@ -244,7 +244,14 @@ class KafkaInputListenerTest {
     }
 
     @Test
-    fun shouldNotProcessDnpmV2Request() {
+    fun shouldProcessDnpmV2Request() {
+        whenever(consentEvaluator.check(any())).thenReturn(
+            ConsentEvaluation(
+                TtpConsentStatus.BROAD_CONSENT_GIVEN,
+                false
+            )
+        )
+
         val mtbFile = Mtb.builder()
             .patient(Patient.builder().id("DUMMY_12345678").build())
             .metadata(
@@ -285,7 +292,7 @@ class KafkaInputListenerTest {
                 Optional.empty()
             )
         )
-        verify(requestProcessor, times(0)).processDeletion(
+        verify(requestProcessor, times(1)).processDeletion(
             anyValueClass(), anyValueClass(), eq(
                 TtpConsentStatus.UNKNOWN_CHECK_FILE
             )