docs: update README.md and add current changes (#137)

Co-authored-by: Paul-Christian Volkmer <code@pcvolkmer.de>

.github/workflows/deploy.yml

@@ -30,6 +30,6 @@ jobs:
       - name: Execute image build and push
         run: |
           ./gradlew bootBuildImage
-          docker tag ghcr.io/ccc-mf/etl-processor ghcr.io/ccc-mf/etl-processor:${{ github.ref_name }}
-          docker push ghcr.io/ccc-mf/etl-processor
-          docker push ghcr.io/ccc-mf/etl-processor:${{ github.ref_name }}
+          docker tag ghcr.io/${{ github.repository }} ghcr.io/${{ github.repository }}:${{ github.ref_name }}
+          docker push ghcr.io/${{ github.repository }}
+          docker push ghcr.io/${{ github.repository }}:${{ github.ref_name }}

.gitignore

@@ -39,3 +39,5 @@ out/
 .vscode/
 /dev/gpas*
 /deploy/.env
+/dev/gICS*
+/dev/gPAS*

README.md

@@ -1,33 +1,81 @@
-# ETL-Processor for bwHC data [![Run Tests](https://github.com/CCC-MF/etl-processor/actions/workflows/test.yml/badge.svg)](https://github.com/CCC-MF/etl-processor/actions/workflows/test.yml)
+# ETL-Processor für das MV gem. §64e und DNPM:DIP
+[![Run Tests](https://github.com/pcvolkmer/etl-processor/actions/workflows/test.yml/badge.svg)](https://github.com/pcvolkmer/etl-processor/actions/workflows/test.yml)
 
-Diese Anwendung versendet ein bwHC-MTB-File an das bwHC-Backend und pseudonymisiert die Patienten-ID.
+Diese Anwendung pseudonymisiert/anonymisiert Daten im DNPM-Datenmodell 2.1 für das Modellvorhaben
+Genomsequenzierung nach §64e unter Beachtung des Consents und sendet sie an DNPM:DIP.
 
 ## Einordnung innerhalb einer DNPM-ETL-Strecke
 
-Diese Anwendung erlaubt das Entgegennehmen von HTTP/REST-Anfragen aus dem Onkostar-Plugin **[onkostar-plugin-dnpmexport](https://github.com/CCC-MF/onkostar-plugin-dnpmexport)**.
+Diese Anwendung erlaubt das Entgegennehmen von HTTP/REST-Anfragen aus dem Onkostar-Plugin
+**[mv64e-onkostar-plugin-export](https://github.com/pcvolkmer/mv64e-onkostar-plugin-export)**.
 
-Der Inhalt einer Anfrage, wenn ein bwHC-MTBFile, wird pseudonymisiert und auf Duplikate geprüft.
+Der Inhalt einer Anfrage, wenn ein MTB-File, wird pseudonymisiert und auf Duplikate geprüft.
 Duplikate werden verworfen, Änderungen werden weitergeleitet.
 
-Löschanfragen werden immer als Löschanfrage an das bwHC-backend weitergeleitet.
+Löschanfragen werden immer als Löschanfrage an DNPM:DIP weitergeleitet.
 
 Zudem ist eine minimalistische Weboberfläche integriert, die einen Einblick in den aktuellen Zustand der Anwendung gewährt.
 
 ![Modell DNPM-ETL-Strecke](docs/etl.png)
 
+### 🔥 Wichtige Änderungen in Version 0.11
+
+Ab Version 0.11 wird ausschließlich [DNPM:DIP](https://github.com/dnpm-dip) unterstützt.
+
+Zudem wurde der Name des Pakets in **mv64e-etl-processor** geändert.
+
+## Funktionsweise
+
 ### Duplikaterkennung
 
-Die Erkennung von Duplikaten ist normalerweise immer aktiv, kann jedoch über den Konfigurationsparameter
+Die Erkennung von Duplikaten ist normalerweise immer aktiv, kann jedoch über den
+Konfigurationsparameter
 `APP_DUPLICATION_DETECTION=false` deaktiviert werden.
 
+### Modelvorhaben genomDE §64e
+
+#### Vorgangsummern
+Zusätzlich zur Patienten Identifier Pseudonymisierung müssen Vorgangsummern generiert werden, die
+jede Übertragung eindeutig identifizieren aber gleichzeitig dem Patienten zugeordnet werden können.
+Dies lässt sich durch weitere Pseudonyme abbilden, allerdings werden pro Originalwert mehrere
+Pseudonyme benötigt.
+Zu diesem Zweck muss in gPas eine **Multi-Pseudonym-Domäne** konfiguriert werden (siehe auch
+*APP_PSEUDONYMIZE_GPAS_CCDN*).
+
+**WICHTIG:** Deaktivierte Pseudonymisierung ist nur für Tests nutzbar. Vorgangsummern sind zufällig
+und werden anschließend verworfen.
+
+#### Test Betriebsbereitschaft
+Um die voll Betriebsbereitschaft herzustellen, muss eine erfolgreiche Übertragung mit dem
+Submission-Typ *Test* erfolgt sein. Über die Umgebungsvariable wird dieser Übertragungsmodus
+aktiviert. Alle Datensätze mit erteilter Teilnahme am Modelvorhaben werden mit der Test-Submission-Kennung
+übertragen, unabhängig vom ursprünglichen Wert.
+
+`APP_GENOM_DE_TEST_SUBMISSION` -> `true` | `false` (falls fehlt, wird `false` angenommen)
+
 ### Datenübermittlung über HTTP/REST
 
-Anfragen werden, wenn nicht als Duplikat behandelt, nach der Pseudonymisierung direkt an das bwHC-Backend gesendet.
+Anfragen werden, wenn nicht als Duplikat behandelt, nach der Pseudonymisierung direkt an DNPM:DIP
+gesendet.
+
+Ein HTTP-Request kann, angenommen die Installation erfolgte auf dem Host `dnpm.example.com` an
+nachfolgende URLs gesendet werden:
+
+| HTTP-Request | URL                                     | Consent-Status im Datensatz | Bemerkung                                                                       |
+|--------------|-----------------------------------------|-----------------------------|---------------------------------------------------------------------------------|
+| `POST`       | `https://dnpm.example.com/mtb`          | `ACTIVE`                    | Die Anwendung verarbeitet den eingehenden Datensatz                             |
+| `POST`       | `https://dnpm.example.com/mtb`          | `REJECT`                    | Die Anwendung sendet einen Lösch-Request für die im Datensatz angegebene Pat-ID |
+| `DELETE`     | `https://dnpm.example.com/mtb/12345678` | -                           | Die Anwendung sendet einen Lösch-Request für Pat-ID `12345678`                  |
+
+Anstelle des Pfads `/mtb` kann auch, wie in Version 0.9 und älter üblich, `/mtbfile` verwendet
+werden.
 
 ### Datenübermittlung mit Apache Kafka
 
-Anfragen werden, wenn nicht als Duplikat behandelt, nach der Pseudonymisierung an Apache Kafka übergeben.
-Eine Antwort wird dabei ebenfalls mithilfe von Apache Kafka übermittelt und nach der Entgegennahme verarbeitet.
+Anfragen werden, wenn nicht als Duplikat behandelt, nach der Pseudonymisierung an Apache Kafka
+übergeben.
+Eine Antwort wird dabei ebenfalls mithilfe von Apache Kafka übermittelt und nach der Entgegennahme
+verarbeitet.
 
 Siehe hierzu auch: https://github.com/CCC-MF/kafka-to-bwhc
 
@@ -41,37 +89,93 @@ Ist diese nicht gesetzt. wird intern eine Anonymisierung der Patienten-ID vorgen
 * `APP_PSEUDONYMIZE_PREFIX`: Standortbezogenes Präfix - `UNKNOWN`, wenn nicht gesetzt
 * `APP_PSEUDONYMIZE_GENERATOR`: `BUILDIN` oder `GPAS` - `BUILDIN`, wenn nicht gesetzt
 
-**Hinweise**: 
+**Hinweis**
 
-* Der alte Konfigurationsparameter `APP_PSEUDONYMIZER` mit den Werten `GPAS` oder `BUILDIN` sollte nicht mehr verwendet
-  werden.
-* Die Pseudonymisierung erfolgt im ETL-Prozessor nur für die Patienten-ID.
-  Andere IDs werden mithilfe des standortbezogenen Präfixes (erneut) anonymisiert, um für den aktuellen Kontext nicht
+Die Pseudonymisierung erfolgt im ETL-Prozessor nur für die Patienten-ID.
+Andere IDs werden mithilfe des standortbezogenen Präfixes (erneut) anonymisiert, um für den
+aktuellen Kontext nicht
 vergleichbare IDs bereitzustellen.
 
 #### Eingebaute Anonymisierung
 
-Wurde keine oder die Verwendung der eingebauten Anonymisierung konfiguriert, so wird für die Patienten-ID der
-entsprechende SHA-256-Hash gebildet und Base64-codiert - hier ohne endende "=" - zuzüglich des konfigurierten Präfixes
-als Patienten-Pseudonym verwendet.
+Wurde keine oder die Verwendung der eingebauten Anonymisierung konfiguriert, so wird für die
+Patienten-ID der entsprechende SHA-256-Hash gebildet und Base64-codiert - hier ohne endende 
+"=" - zuzüglich des konfigurierten Präfixes als Patienten-Pseudonym verwendet.
 
 #### Pseudonymisierung mit gPAS
 
 Wurde die Verwendung von gPAS konfiguriert, so sind weitere Angaben zu konfigurieren. 
 
-* `APP_PSEUDONYMIZE_GPAS_URI`: URI der gPAS-Instanz inklusive Endpoint (z.B. `http://localhost:8080/ttp-fhir/fhir/gpas/$$pseudonymizeAllowCreate`)
-* `APP_PSEUDONYMIZE_GPAS_TARGET`: gPas Domänenname
+Ab Version 2025.1 (Multi-Pseudonym Support)
+
+* `APP_PSEUDONYMIZE_GPAS_URI`: URI der gPAS-Instanz REST API (e.g. http://127.0.0.1:9990/ttp-fhir/fhir/gpas)
 * `APP_PSEUDONYMIZE_GPAS_USERNAME`: gPas Basic-Auth Benutzername
 * `APP_PSEUDONYMIZE_GPAS_PASSWORD`: gPas Basic-Auth Passwort
-* ~~`APP_PSEUDONYMIZE_GPAS_SSLCALOCATION`~~: **Veraltet** - Root Zertifikat für gPas, falls es dediziert hinzugefügt werden muss.
+* `APP_PSEUDONYMIZE_GPAS_PID_DOMAIN`: gPas Domänenname für Patienten ID
+* `APP_PSEUDONYMIZE_GPAS_GENOM_DE_TAN_DOMAIN`: gPas Multi-Pseudonym-Domäne für genomDE Vorgangsnummern (
+  Clinical data node)
 
-Der Konfigurationsparameter `APP_PSEUDONYMIZE_GPAS_SSLCALOCATION` sollte nicht mehr verwendet werden und wird in einer kommenden Version entfernt.
-Stattdessen sollte das Root Zertifikat wie unter [_Integration eines eigenen Root CA Zertifikats_](#integration-eines-eigenen-root-ca-zertifikats) beschrieben eingebunden werden.
+### (Externe) Consent-Services
+
+Consent-Services können konfiguriert werden.
+
+* `APP_CONSENT_SERVICE`: Zu verwendender (externer) Consent-Service:
+    * `NONE`: Verwende Consent-Angaben im MTB-File v1 und ändere diese nicht. Für MTB-File v2 wird
+      die Prüfung übersprungen.
+    * `GICS`: Verwende gICS der Greiswalder Tools (siehe unten).
+
+#### Einwilligung gICS
+
+Ab gIcs Version 2.13.0 kann im ETL-Processor
+per [REST-Schnittstelle](https://simplifier.net/guide/ttp-fhir-gateway-ig/ImplementationGuide-markdown-Einwilligungsmanagement-Operations-isConsented?version=current)
+der Einwilligungsstatus abgefragt werden.
+Vor der MTB-Übertragung kann der zum Sendezeitpunkt verfügbarer Einwilligungsstatus über Endpunkt
+*isConsented* (MTB-File v1) und *currentPolicyStatesForPerson* (MTB-File v2) abgefragt werden.
+
+Falls Anbindung an gICS aktiviert wurde, wird der Einwilligungsstatus der MTB Datei ignoriert.
+Stattdessen werden vorhandene Einwilligungen abgefragt und in die MTB Datei eingebettet.
+
+Es werden zwei Einwilligungsdomänen unterstützt, eine für Broad Consent und als zweites GenomDE
+Modelvorhaben §64e.
+
+##### Hinweise
+
+1. Die aktuelle Impl. nimmt an, dass die hinterlegten Domänen der Einwilligungen ausschließlich für
+   die genannten Art von Einwilligungen genutzt werden. Es finde keine weitere Filterung statt. Wir
+   fragen pro Domäne die Schnittstelle `CurrentPolicyStatesForPerson` - siehe
+   auch [IG TTP-FHIR Gateway
+   ](https://www.ths-greifswald.de/wp-content/uploads/tools/fhirgw/ig/2024-3-0/ImplementationGuide-markdown-Einwilligungsmanagement-Operations-currentPolicyStatesForPerson.html)
+   ab.
+2. Die Einwilligung wird für den Patienten-Identifier der MTB abgerufen und anschließend durch das
+   DNPM Pseudonym ersetzt.
+3. Abfragen von Einwilligungen über gesonderte Pseudonyme anstatt des MTB-Identifiers fehlt in der
+   ersten Implementierung.
+4. Bei Verarbeitung von MTB Version 1.x Inhalten ist eine positive Einwilligung für die
+   Weiterverarbeitung notwendig. Das Fehlen einer Einwilligung löst die Löschung des Patienten im
+   Brückenkopf aus.
+
+##### Konfiguration
+
+* `APP_CONSENT_SERVICE`: Muss Wert `GICS` gesetzt sein um die Abfragen zu aktivieren. Der Wert
+  `NONE` deaktiviert die Abfrage in gICS.
+* `APP_CONSENT_GICS_URI`: URI der gICS-Instanz (z.B. `http://localhost:8090/ttp-fhir/fhir/gics`)
+* `APP_CONSENT_GICS_USERNAME`: gIcs Basic-Auth Benutzername
+* `APP_CONSENT_GICS_PASSWORD`: gIcs Basic-Auth Passwort
+* `APP_CONSENT_GICS_PERSONIDENTIFIERSYSTEM`: Derzeit wird nur die PID unterstützt. wenn leer wird
+  `https://ths-greifswald.de/fhir/gics/identifiers/Patienten-ID` angenommen
+* `APP_CONSENT_GICS_BROADCONSENTDOMAINNAME`: Domäne in der gIcs Broad Consent Einwilligungen
+  verwaltet. Falls Wert leer, wird `MII` angenommen.
+* `APP_CONSENT_GICS_GNOMDECONSENTDOMAINNAME`: Domäne in der gIcs GenomDE Modelvorhaben §64e
+  Einwilligungen verwaltet. Falls Wert leer, wird `GenomDE_MV` angenommen.
+* `APP_CONSENT_GICS_POLICYCODE`: Die entscheidende Objekt-ID der zu prüfenden Einwilligung-Regel.
+  Falls leer wird `2.16.840.1.113883.3.1937.777.24.5.3.6` angenommen.
+* `APP_CONSENT_GICS_POLICYSYSTEM`: Das System der Einwilligung-Regel der Objekt-IDs. Falls leer wird
+  `urn:oid:2.16.840.1.113883.3.1937.777.24.5.3` angenommen.
 
 ### Anmeldung mit einem Passwort
 
-Ein initialer Administrator-Account kann optional konfiguriert werden und sorgt dafür, dass bestimmte Bereiche nur nach
-einem erfolgreichen Login erreichbar sind.
+Ein initialer Administrator-Account kann optional konfiguriert werden und sorgt dafür, dass
+bestimmte Bereiche nur nach einem erfolgreichen Login erreichbar sind.
 
 * `APP_SECURITY_ADMIN_USER`: Muss angegeben werden zur Aktivierung der Zugriffsbeschränkung.
 * `APP_SECURITY_ADMIN_PASSWORD`: Das Passwort für den Administrator (Empfohlen).
@@ -84,27 +188,34 @@ Hier Beispiele für das Beispielpasswort `very-secret`:
 * `{bcrypt}$2y$05$CCkfsMr/wbTleMyjVIK8g.Aa3RCvrvoLXVAsL.f6KeouS88vXD9b6`
 * `{sha256}9a34717f0646b5e9cfcba70055de62edb026ff4f68671ba3db96aa29297d2df5f1a037d58c745657`
 
-Wird kein Administrator-Passwort angegeben, wird ein zufälliger Wert generiert und beim Start der Anwendung in den Logs
+Wird kein Administrator-Passwort angegeben, wird ein zufälliger Wert generiert und beim Start der
+Anwendung in den Logs
 angezeigt.
 
 #### Weitere (nicht administrative) Nutzer mit OpenID Connect
 
-Die folgenden Konfigurationsparameter werden benötigt, um die Authentifizierung weiterer Benutzer an einen OIDC-Provider
+Die folgenden Konfigurationsparameter werden benötigt, um die Authentifizierung weiterer Benutzer an
+einen OIDC-Provider
 zu delegieren.
 Ein Admin-Benutzer muss dabei konfiguriert sein.
 
-* `APP_SECURITY_ENABLE_OIDC`: Aktiviert die Nutzung von OpenID Connect. Damit sind weitere Parameter erforderlich
-* `SPRING_SECURITY_OAUTH2_CLIENT_REGISTRATION_CUSTOM_CLIENT_NAME`: Name. Wird beim zusätzlichen Loginbutton angezeigt.
+* `APP_SECURITY_ENABLE_OIDC`: Aktiviert die Nutzung von OpenID Connect. Damit sind weitere Parameter
+  erforderlich
+* `SPRING_SECURITY_OAUTH2_CLIENT_REGISTRATION_CUSTOM_CLIENT_NAME`: Name. Wird beim zusätzlichen
+  Loginbutton angezeigt.
 * `SPRING_SECURITY_OAUTH2_CLIENT_REGISTRATION_CUSTOM_CLIENT_ID`: Client-ID
 * `SPRING_SECURITY_OAUTH2_CLIENT_REGISTRATION_CUSTOM_CLIENT_SECRET`: Client-Secret
-* `SPRING_SECURITY_OAUTH2_CLIENT_REGISTRATION_CUSTOM_CLIENT_SCOPE[0]`: Hier sollte immer `openid` angegeben werden.
+* `SPRING_SECURITY_OAUTH2_CLIENT_REGISTRATION_CUSTOM_CLIENT_SCOPE[0]`: Hier sollte immer `openid`
+  angegeben werden.
 * `SPRING_SECURITY_OAUTH2_CLIENT_PROVIDER_CUSTOM_ISSUER_URI`: Die URI des Providers,
   z.B. `https://auth.example.com/realm/example`
-* `SPRING_SECURITY_OAUTH2_CLIENT_PROVIDER_CUSTOM_USER_NAME_ATTRIBUTE`: Name des Attributes, welches den Benutzernamen
+* `SPRING_SECURITY_OAUTH2_CLIENT_PROVIDER_CUSTOM_USER_NAME_ATTRIBUTE`: Name des Attributes, welches
+  den Benutzernamen
   enthält.
   Oft verwendet: `preferred_username`
 
-Ist die Nutzung von OpenID Connect konfiguriert, erscheint ein zusätzlicher Login-Button zur Nutzung mit OpenID Connect
+Ist die Nutzung von OpenID Connect konfiguriert, erscheint ein zusätzlicher Login-Button zur Nutzung
+mit OpenID Connect
 und dem konfigurierten `CLIENT_NAME`.
 
 ![Login mit OpenID Connect](docs/login.png)
@@ -117,58 +228,73 @@ zu finden.
 
 Wird OpenID Connect verwendet, gibt es eine rollenbasierte Berechtigungszuweisung.
 
-Die Standardrolle für neue OIDC-Benutzer kann mit der Option `APP_SECURITY_DEFAULT_USER_ROLE` festgelegt werden.
+Die Standardrolle für neue OIDC-Benutzer kann mit der Option `APP_SECURITY_DEFAULT_USER_ROLE`
+festgelegt werden.
 Mögliche Werte sind `user` oder `guest`. Standardwert ist `user`.
 
 Benutzer mit der Rolle "Gast" sehen nur die Inhalte, die auch nicht angemeldete Benutzer sehen.
 
-Hierdurch ist es möglich, einzelne Benutzer einzuschränken oder durch Änderung der Standardrolle auf `guest` nur
+Hierdurch ist es möglich, einzelne Benutzer einzuschränken oder durch Änderung der Standardrolle auf
+`guest` nur
 einzelne Benutzer als vollwertige Nutzer zuzulassen.
 
 ![Rollenverwaltung](docs/userroles.png)
 
-Benutzer werden nach dem Entfernen oder der Änderung der vergebenen Rolle automatisch abgemeldet und müssen sich neu anmelden.
+Benutzer werden nach dem Entfernen oder der Änderung der vergebenen Rolle automatisch abgemeldet und
+müssen sich neu anmelden.
 Sie bekommen dabei wieder die Standardrolle zugewiesen.
 
 #### Auswirkungen auf den dargestellten Inhalt
 
-Nur Administratoren haben Zugriff auf den Konfigurationsbereich, nur angemeldete Benutzer können die anonymisierte oder
-pseudonymisierte Patienten-ID sowie den Qualitätsbericht des bwHC-Backends einsehen.
+Nur Administratoren haben Zugriff auf den Konfigurationsbereich, nur angemeldete Benutzer können die
+anonymisierte oder
+pseudonymisierte Patienten-ID sowie den Qualitätsbericht von DNPM:DIP einsehen.
 
 Wurde kein Administrator-Account konfiguriert, sind diese Inhalte generell nicht verfügbar.
 
 ### Tokenbasierte Authentifizierung für MTBFile-Endpunkt
 
-Die Anwendung unterstützt das Erstellen und Nutzen einer tokenbasierten Authentifizierung für den MTB-File-Endpunkt.
+Die Anwendung unterstützt das Erstellen und Nutzen einer tokenbasierten Authentifizierung für den
+MTB-File-Endpunkt.
 
-Dies kann mit der Umgebungsvariable `APP_SECURITY_ENABLE_TOKENS` aktiviert (`true` oder `false`) werden
+Dies kann mit der Umgebungsvariable `APP_SECURITY_ENABLE_TOKENS` aktiviert (`true` oder `false`)
+werden
 und ist als Standardeinstellung nicht aktiv.
 
-Ist diese Einstellung aktiviert worden, ist es Administratoren möglich, Zugriffstokens für Onkostar zu erstellen, die
+Ist diese Einstellung aktiviert worden, ist es Administratoren möglich, Zugriffstokens für Onkostar
+zu erstellen, die
 zur Nutzung des MTB-File-Endpunkts eine HTTP-Basic-Authentifizierung voraussetzen.
 
 ![Tokenverwaltung](docs/tokens.png)
 
-In diesem Fall können den Endpunkt für das Onkostar-Plugin **[onkostar-plugin-dnpmexport](https://github.com/CCC-MF/onkostar-plugin-dnpmexport)** wie folgt konfigurieren:
+In diesem Fall kann der Endpunkt für das Onkostar-Plugin *
+*[onkostar-plugin-dnpmexport](https://github.com/CCC-MF/onkostar-plugin-dnpmexport)** wie folgt
+konfiguriert werden:
 
 ```
 https://testonkostar:MTg1NTL...NGU4@etl.example.com/mtbfile
 ```
 
-Ist die Verwendung von Tokens aktiv, werden Anfragen ohne die Angabe der Token-Information abgelehnt.
+Ist die Verwendung von Tokens aktiv, werden Anfragen ohne die Angabe der Token-Information
+abgelehnt.
+
+Alternativ kann eine Authentifizierung über Benutzername/Passwort oder OIDC erfolgen.
 
 ### Transformation von Werten
 
-In Onkostar kann es vorkommen, dass ein Wert eines Merkmalskatalogs an einem Standort angepasst wurde und dadurch nicht dem Wert entspricht,
-der vom bwHC-Backend akzeptiert wird.
+In Onkostar kann es vorkommen, dass ein Wert eines Merkmalskatalogs an einem Standort angepasst
+wurde und dadurch nicht dem Wert entspricht,
+der von DNPM:DIP akzeptiert wird.
 
-Diese Anwendung bietet daher die Möglichkeit, eine Transformation vorzunehmen. Hierzu muss der "Pfad" innerhalb des JSON-MTB-Files angegeben werden und
-welcher Wert wie ersetzt werden soll.
+Diese Anwendung bietet daher die Möglichkeit, eine Transformation vorzunehmen. Hierzu muss der "Pfad"
+innerhalb des JSON-MTB-Files angegeben werden und welcher Wert wie ersetzt werden soll.
 
 Hier ein Beispiel für die erste (Index 0 - weitere dann mit 1,2, ...) Transformationsregel:
 
-* `APP_TRANSFORMATIONS_0_PATH`: Pfad zum Wert in der JSON-MTB-Datei. Beispiel: `diagnoses[*].icd10.version` für **alle** Diagnosen
-* `APP_TRANSFORMATIONS_0_FROM`: Angabe des Werts, der ersetzt werden soll. Andere Werte bleiben dabei unverändert.
+* `APP_TRANSFORMATIONS_0_PATH`: Pfad zum Wert in der JSON-MTB-Datei. Beispiel:
+  `diagnoses[*].icd10.version` für **alle** Diagnosen
+* `APP_TRANSFORMATIONS_0_FROM`: Angabe des Werts, der ersetzt werden soll. Andere Werte bleiben
+  dabei unverändert.
 * `APP_TRANSFORMATIONS_0_TO`: Angabe des neuen Werts.
 
 ### Mögliche Endpunkte zur Datenübermittlung
@@ -180,51 +306,61 @@ Werden sowohl REST als auch Kafka-Endpunkt konfiguriert, wird nur der REST-Endpu
 
 #### REST
 
-Folgende Umgebungsvariablen müssen gesetzt sein, damit ein bwHC-MTB-File an das bwHC-Backend gesendet wird:
+Folgende Umgebungsvariablen müssen gesetzt sein, damit ein MTB-File an DNPM:DIP gesendet wird:
 
-* `APP_REST_URI`: URI der zu benutzenden API der bwHC-Backend-Instanz. z.B.: `http://localhost:9000/bwhc/etl/api`
+* `APP_REST_URI`: URI der zu benutzenden API der Backend-Instanz. Zum Beispiel `http://localhost:9000/api`
+* `APP_REST_USERNAME`: Basic-Auth-Benutzername für den REST-Endpunkt
+* `APP_REST_PASSWORD`: Basic-Auth-Passwort für den REST-Endpunkt
 
 #### Kafka-Topics
 
-Folgende Umgebungsvariablen müssen gesetzt sein, damit ein bwHC-MTB-File an ein Kafka-Topic übermittelt wird:
+Folgende Umgebungsvariablen müssen gesetzt sein, damit ein MTB-File an ein Kafka-Topic
+übermittelt wird:
 
 * `APP_KAFKA_OUTPUT_TOPIC`: Zu verwendendes Topic zum Versenden von Anfragen.
-  Ersetzt in einer kommenden Version `APP_KAFKA_TOPIC`. 
-* `APP_KAFKA_OUTPUT_RESPONSE_TOPIC`: Topic mit Antworten über den Erfolg des Versendens. Standardwert: `APP_KAFKA_TOPIC` mit Anhang "_response".
-  Ersetzt in einer kommenden Version `APP_KAFKA_RESPONSE_TOPIC`.
-* `APP_KAFKA_GROUP_ID`: Kafka GroupID des Consumers. Standardwert: `APP_KAFKA_TOPIC` mit Anhang "_group".
+* `APP_KAFKA_OUTPUT_RESPONSE_TOPIC`: Topic mit Antworten über den Erfolg des Versendens.
+  Standardwert: `APP_KAFKA_TOPIC` mit Anhang "_response".
+* `APP_KAFKA_GROUP_ID`: Kafka GroupID des Consumers. Standardwert: `APP_KAFKA_TOPIC` mit Anhang "_
+  group".
 * `APP_KAFKA_SERVERS`: Zu verwendende Kafka-Bootstrap-Server als kommagetrennte Liste
 
-Wird keine Rückantwort über Apache Kafka empfangen und es gibt keine weitere Möglichkeit den Status festzustellen, verbleibt der Status auf `UNKNOWN`.
+Wird keine Rückantwort über Apache Kafka empfangen und es gibt keine weitere Möglichkeit den Status
+festzustellen, verbleibt der Status auf `UNKNOWN`.
 
 Weitere Einstellungen können über die Parameter von Spring Kafka konfiguriert werden.
 
-Lässt sich keine Verbindung zu dem bwHC-Backend aufbauen, wird eine Rückantwort mit Status-Code `900` erwartet, welchen es
+Lässt sich keine Verbindung zu dem Backend aufbauen, wird eine Rückantwort mit Status-Code `900`
+erwartet, welchen es
 für HTTP nicht gibt.
 
-Wird die Umgebungsvariable `APP_KAFKA_INPUT_TOPIC` gesetzt, kann eine Nachricht auch über dieses Kafka-Topic an den ETL-Prozessor übermittelt werden.
+Wird die Umgebungsvariable `APP_KAFKA_INPUT_TOPIC` gesetzt, kann eine Nachricht auch über dieses
+Kafka-Topic an den ETL-Prozessor übermittelt werden.
 
 ##### Retention Time
 
 Generell werden in Apache Kafka alle Records entsprechend der Konfiguration vorgehalten.
 So wird ohne spezielle Konfiguration ein Record für 7 Tage in Apache Kafka gespeichert.
-Es sind innerhalb dieses Zeitraums auch alte Informationen weiterhin enthalten, wenn der Consent später abgelehnt wurde.
+Es sind innerhalb dieses Zeitraums auch alte Informationen weiterhin enthalten, wenn der Consent
+später abgelehnt wurde.
 
 Durch eine entsprechende Konfiguration des Topics kann dies verhindert werden.
 
 Beispiel - auszuführen innerhalb des Kafka-Containers: Löschen alter Records nach einem Tag
+
 ```
 kafka-configs.sh --bootstrap-server localhost:9092 --alter --topic test --add-config retention.ms=86400000
 ```
 
 ##### Key based Retention
 
-Möchten Sie hingegen immer nur die letzte Meldung für einen Patienten und eine Erkrankung in Apache Kafka vorhalten,
+Möchten Sie hingegen immer nur die letzte Meldung für einen Patienten und eine Erkrankung in Apache
+Kafka vorhalten,
 so ist die nachfolgend genannte Konfiguration der Kafka-Topics hilfreich.
 
-
-* `retention.ms`: Möglichst kurze Zeit in der alte Records noch erhalten bleiben, z.B. 10 Sekunden 10000
-* `cleanup.policy`: Löschen alter Records und Beibehalten des letzten Records zu einem Key [delete,compact]
+* `retention.ms`: Möglichst kurze Zeit in der alte Records noch erhalten bleiben, z.B. 10 Sekunden
+  10000
+* `cleanup.policy`: Löschen alter Records und Beibehalten des letzten Records zu einem
+  Key [delete,compact]
 
 Beispiele für ein Topic `test`, hier bitte an die verwendeten Topics anpassen.
 
@@ -233,21 +369,39 @@ kafka-configs.sh --bootstrap-server localhost:9092 --alter --topic test --add-co
 kafka-configs.sh --bootstrap-server localhost:9092 --alter --topic test --add-config cleanup.policy=[delete,compact]
 ```
 
-Da als Key eines Records die (pseudonymisierte) Patienten-ID verwendet wird, stehen mit obiger Konfiguration 
-der Kafka-Topics nach 10 Sekunden nur noch der jeweils letzte Eintrag für den entsprechenden Key zur Verfügung.
+Da als Key eines Records die (pseudonymisierte) Patienten-ID verwendet wird, stehen mit obiger
+Konfiguration
+der Kafka-Topics nach 10 Sekunden nur noch der jeweils letzte Eintrag für den entsprechenden Key zur
+Verfügung.
 
-Da der Key sowohl für die Records in Richtung bwHC-Backend für die Rückantwort identisch aufgebaut ist, lassen sich so
-auch im Falle eines Consent-Widerspruchs die enthaltenen Daten als auch die Offenlegung durch Verifikationsdaten in der
+Da der Key sowohl für die Records in Richtung DNPM:DIP, als auch für die Rückantwort identisch
+aufgebaut ist, lassen sich so
+auch im Falle eines Consent-Widerspruchs die enthaltenen Daten als auch die Offenlegung durch
+Verifikationsdaten in der
 Antwort effektiv verhindern, da diese nach 10 Sekunden gelöscht werden.
 
-Es steht dann nur noch die jeweils letzten Information zur Verfügung, dass für einen Patienten/eine Erkrankung
+Es steht dann nur noch die jeweils letzten Information zur Verfügung, dass für einen Patienten/eine
+Erkrankung
 ein Consent-Widerspruch erfolgte.
 
-Dieses Vorgehen empfiehlt sich, wenn Sie gespeicherte Records nachgelagert für andere Auswertungen verwenden möchten.
+Dieses Vorgehen empfiehlt sich, wenn Sie gespeicherte Records nachgelagert für andere Auswertungen
+verwenden möchten.
+
+### Antworten und Statusauswertung
+
+Seit Version 0.10 wird die Issue-Liste der Antwort verwendet und die darion enthaltene höchste
+Severity-Stufe als Ergebnis verwendet.
+
+| Höchste Severity | Status    |
+|------------------|-----------|
+| `info`           | `SUCCESS` |
+| `warning`        | `WARNING` |
+| `error`, `fatal` | `ERROR`   |
 
 ## Docker-Images
 
-Diese Anwendung ist auch als Docker-Image verfügbar: https://github.com/CCC-MF/etl-processor/pkgs/container/etl-processor
+Diese Anwendung ist auch als Docker-Image
+verfügbar: https://github.com/pcvolkmer/etl-processor/pkgs/container/etl-processor
 
 ### Images lokal bauen
 
@@ -257,20 +411,25 @@ Diese Anwendung ist auch als Docker-Image verfügbar: https://github.com/CCC-MF/
 
 ### Integration eines eigenen Root CA Zertifikats
 
-Wird eine eigene Root CA verwendet, die nicht offiziell signiert ist, wird es zu Problemen beim SSL-Handshake kommen, wenn z.B. gPAS zur Generierung von Pseudonymen verwendet wird.
+Wird eine eigene Root CA verwendet, die nicht offiziell signiert ist, wird es zu Problemen beim
+SSL-Handshake kommen, wenn z.B. gPAS zur Generierung von Pseudonymen verwendet wird.
 
 Hier bietet es sich an, das Root CA Zertifikat in das Image zu integrieren.
 
 #### Integration beim Bauen des Images
 
-Hier muss die Zeile `"BP_EMBED_CERTS" to "true"` in der Datei `build.gradle.kts` verwendet werden und darf nicht als Kommentar verwendet werden.
+Hier muss die Zeile `"BP_EMBED_CERTS" to "true"` in der Datei `build.gradle.kts` verwendet werden
+und darf nicht als Kommentar verwendet werden.
 
-Die PEM-Datei mit dem/den Root CA Zertifikat(en) muss dabei im vorbereiteten Verzeichnis [`bindings/ca-certificates`](bindings/ca-certificates) enthalten sein.
+Die PEM-Datei mit dem/den Root CA Zertifikat(en) muss dabei im vorbereiteten Verzeichnis [
+`bindings/ca-certificates`](bindings/ca-certificates) enthalten sein.
 
 #### Integration zur Laufzeit
 
 Hier muss die Umgebungsvariable `SERVICE_BINDING_ROOT` z.B. auf den Wert `/bindings` gesetzt sein.
-Zudem muss ein Verzeichnis `bindings/ca-certificates` - analog zum Verzeichnis [`bindings/ca-certificates`](bindings/ca-certificates) mit einer PEM-Datei als Docker-Volume eingebunden werden.
+Zudem muss ein Verzeichnis `bindings/ca-certificates` - analog zum Verzeichnis [
+`bindings/ca-certificates`](bindings/ca-certificates) mit einer PEM-Datei als Docker-Volume
+eingebunden werden.
 
 Beispiel für Docker-Compose:
 
@@ -285,12 +444,14 @@ Beispiel für Docker-Compose:
 ```
 
 ## Deployment
+
 *Ausführen als Docker Container:*
 
 ```bash
 cd ./deploy
 cp env-sample.env .env
 ```
+
 Wenn gewünscht, Änderungen in der `.env` vornehmen.
 
 ```bash
@@ -299,15 +460,19 @@ docker compose up -d
 
 ### Einfaches Beispiel für ein eigenes Docker-Compose-File
 
-Die Datei [`docs/docker-compose.yml`](docs/docker-compose.yml) zeigt eine einfache Konfiguration für REST-Requests basierend 
+Die Datei [`docs/docker-compose.yml`](docs/docker-compose.yml) zeigt eine einfache Konfiguration für
+REST-Requests basierend
 auf Docker-Compose mit der gestartet werden kann.
 
 ### Betrieb hinter einem Reverse-Proxy
 
-Die Anwendung verarbeitet `X-Forwarded`-HTTP-Header und kann daher auch hinter einem Reverse-Proxy betrieben werden.
+Die Anwendung verarbeitet `X-Forwarded`-HTTP-Header und kann daher auch hinter einem Reverse-Proxy
+betrieben werden.
 
-Dabei werden, je nachdem welche Header durch den Reverse-Proxy gesendet werden auch Protokoll, Host oder auch Path-Präfix
-automatisch erkannt und verwendet werden. Dadurch ist z.B. eine abweichende Angabe des Pfads problemlos möglich.
+Dabei werden, je nachdem welche Header durch den Reverse-Proxy gesendet werden auch Protokoll, Host
+oder auch Path-Präfix
+automatisch erkannt und verwendet werden. Dadurch ist z.B. eine abweichende Angabe des Pfads
+problemlos möglich.
 
 #### Beispiel *Traefik* (mit Docker-Labels):
 
@@ -343,13 +508,17 @@ Das folgende Beispiel zeigt die Konfiguration einer _location_ in einer nginx-Ko
 
 ## Entwicklungssetup
 
-Zum Starten einer lokalen Entwicklungs- und Testumgebung kann die beiliegende Datei `dev-compose.yml` verwendet werden.
+Zum Starten einer lokalen Entwicklungs- und Testumgebung kann die beiliegende Datei
+`dev-compose.yml` verwendet werden.
 Diese kann zur Nutzung der Datenbanken **MariaDB** als auch **PostgreSQL** angepasst werden.
 
-Zur Nutzung von Apache Kafka muss dazu ein Eintrag im hosts-File vorgenommen werden und der Hostname `kafka` auf die lokale
-IP-Adresse verweisen. Ohne diese Einstellung ist eine Nutzung von Apache Kafka außerhalb der Docker-Umgebung nicht möglich.
+Zur Nutzung von Apache Kafka muss dazu ein Eintrag im hosts-File vorgenommen werden und der Hostname
+`kafka` auf die lokale
+IP-Adresse verweisen. Ohne diese Einstellung ist eine Nutzung von Apache Kafka außerhalb der
+Docker-Umgebung nicht möglich.
 
-Beim Start der Anwendung mit dem Profil `dev` wird die in `dev-compose.yml` definierte Umgebung beim Start der
+Beim Start der Anwendung mit dem Profil `dev` wird die in `dev-compose.yml` definierte Umgebung beim
+Start der
 Anwendung mit gestartet:
 
 ```
@@ -360,3 +529,6 @@ Die Datei `application-dev.yml` enthält hierzu die Konfiguration für das Profi
 
 Beim Ausführen der Integrationstests wird eine Testdatenbank in einem Docker-Container gestartet.
 Siehe hier auch die Klasse `AbstractTestcontainerTest` unter `src/integrationTest`.
+
+Ein einfaches Entwickler-Setup inklusive DNPM:DIP ist mit Hilfe
+von https://github.com/pcvolkmer/dnpmdip-devenv realisierbar.

build.gradle.kts

@@ -1,30 +1,35 @@
 import org.gradle.api.tasks.testing.logging.TestLogEvent
+import org.jetbrains.kotlin.gradle.dsl.JvmTarget
 import org.jetbrains.kotlin.gradle.tasks.KotlinCompile
 import org.springframework.boot.gradle.tasks.bundling.BootBuildImage
 
 plugins {
     war
-    id("org.springframework.boot") version "3.2.7"
-    id("io.spring.dependency-management") version "1.1.5"
-    kotlin("jvm") version "1.9.24"
-    kotlin("plugin.spring") version "1.9.24"
+    id("org.springframework.boot") version "3.5.3"
+    id("io.spring.dependency-management") version "1.1.7"
+    kotlin("jvm") version "1.9.25"
+    kotlin("plugin.spring") version "1.9.25"
+    jacoco
 }
 
-group = "de.ukw.ccc"
-version = "0.9.6"
+group = "dev.dnpm"
+version = "0.11.0-SNAPSHOT"
 
 var versions = mapOf(
-    "bwhc-dto-java" to "0.3.0",
-    "hapi-fhir" to "6.10.5",
-    "httpclient5" to "5.2.3",
-    "mockito-kotlin" to "5.3.1",
+    "mtb-dto" to "0.1.0-SNAPSHOT",
+    "hapi-fhir" to "7.6.1",
+    "mockito-kotlin" to "5.4.0",
+    "archunit" to "1.3.0",
     // Webjars
+    "webjars-locator" to "0.52",
     "echarts" to "5.4.3",
     "htmx.org" to "1.9.12"
 )
 
 java {
-    sourceCompatibility = JavaVersion.VERSION_21
+    toolchain {
+        languageVersion = JavaLanguageVersion.of(21)
+    }
 }
 
 sourceSets {
@@ -43,9 +48,18 @@ configurations {
     compileOnly {
         extendsFrom(configurations.annotationProcessor.get())
     }
+
+    all {
+        resolutionStrategy {
+            cacheChangingModulesFor(5, "minutes")
+        }
+    }
 }
 
 repositories {
+    maven {
+        url = uri("https://git.dnpm.dev/api/packages/public-snapshots/maven")
+    }
     maven {
         url = uri("https://git.dnpm.dev/api/packages/public/maven")
     }
@@ -62,37 +76,47 @@ dependencies {
     implementation("org.thymeleaf.extras:thymeleaf-extras-springsecurity6")
     implementation("com.fasterxml.jackson.module:jackson-module-kotlin")
     implementation("org.springframework.kafka:spring-kafka")
+    implementation("org.flywaydb:flyway-database-postgresql")
     implementation("org.flywaydb:flyway-mysql")
     implementation("commons-codec:commons-codec")
     implementation("io.projectreactor.kotlin:reactor-kotlin-extensions")
-    implementation("de.ukw.ccc:bwhc-dto-java:${versions["bwhc-dto-java"]}")
+    implementation("dev.pcvolkmer.mv64e:mtb-dto:${versions["mtb-dto"]}") { isChanging = true }
     implementation("ca.uhn.hapi.fhir:hapi-fhir-base:${versions["hapi-fhir"]}")
     implementation("ca.uhn.hapi.fhir:hapi-fhir-structures-r4:${versions["hapi-fhir"]}")
-    implementation("org.apache.httpcomponents.client5:httpclient5:${versions["httpclient5"]}")
+    implementation("org.apache.httpcomponents.client5:httpclient5")
     implementation("com.jayway.jsonpath:json-path")
-    implementation("org.webjars:webjars-locator:0.52")
+    implementation("org.webjars:webjars-locator:${versions["webjars-locator"]}")
     implementation("org.webjars.npm:echarts:${versions["echarts"]}")
     implementation("org.webjars.npm:htmx.org:${versions["htmx.org"]}")
+    // Fix for CVE-2025-48924
+    implementation("org.apache.commons:commons-lang3:3.18.0")
+
     runtimeOnly("org.mariadb.jdbc:mariadb-java-client")
     runtimeOnly("org.postgresql:postgresql")
+
     developmentOnly("org.springframework.boot:spring-boot-devtools")
     developmentOnly("org.springframework.boot:spring-boot-docker-compose")
+
     annotationProcessor("org.springframework.boot:spring-boot-configuration-processor")
+
     providedRuntime("org.springframework.boot:spring-boot-starter-tomcat")
+
     testImplementation("org.springframework.boot:spring-boot-starter-test")
     testImplementation("org.springframework.security:spring-security-test")
     testImplementation("io.projectreactor:reactor-test")
     testImplementation("org.mockito.kotlin:mockito-kotlin:${versions["mockito-kotlin"]}")
+
     integrationTestImplementation("org.testcontainers:junit-jupiter")
     integrationTestImplementation("org.testcontainers:postgresql")
-    // Override dependency version from org.testcontainers:junit-jupiter - CVE-2024-26308, CVE-2024-25710
-    integrationTestImplementation("org.apache.commons:commons-compress:1.26.1")
+    integrationTestImplementation("com.tngtech.archunit:archunit:${versions["archunit"]}")
+    integrationTestImplementation("org.htmlunit:htmlunit")
+    integrationTestImplementation("org.springframework:spring-webflux")
 }
 
 tasks.withType<KotlinCompile> {
-    kotlinOptions {
-        freeCompilerArgs += "-Xjsr305=strict"
-        jvmTarget = "21"
+    compilerOptions {
+        freeCompilerArgs.add("-Xjsr305=strict")
+        jvmTarget.set(JvmTarget.JVM_21)
     }
 }
 
@@ -103,8 +127,9 @@ tasks.withType<Test> {
     }
 }
 
-task<Test>("integrationTest") {
+tasks.register<Test>("integrationTest") {
     description = "Runs integration tests"
+    group = "verification"
 
     testClassesDirs = sourceSets["integrationTest"].output.classesDirs
     classpath = sourceSets["integrationTest"].runtimeClasspath
@@ -112,8 +137,24 @@ task<Test>("integrationTest") {
     shouldRunAfter("test")
 }
 
+tasks.register("allTests") {
+    description = "Run all tests"
+    group = JavaBasePlugin.VERIFICATION_GROUP
+    dependsOn(tasks.withType<Test>())
+}
+
+tasks.jacocoTestReport {
+    dependsOn("allTests")
+
+    executionData(fileTree(project.rootDir.absolutePath).include("**/build/jacoco/*.exec"))
+
+    reports {
+        xml.required = true
+    }
+}
+
 tasks.named<BootBuildImage>("bootBuildImage") {
-    imageName.set("ghcr.io/ccc-mf/etl-processor")
+    imageName.set("ghcr.io/pcvolkmer/mv64e-etl-processor")
 
     // Binding for CA Certs
     bindings.set(listOf(
@@ -123,8 +164,8 @@ tasks.named<BootBuildImage>("bootBuildImage") {
     environment.set(environment.get() + mapOf(
         // Enable this line to embed CA Certs into image on build time
         //"BP_EMBED_CERTS" to "true",
-        "BP_OCI_SOURCE" to "https://github.com/CCC-MF/etl-processor",
+        "BP_OCI_SOURCE" to "https://github.com/pcvolkmer/mv64e-etl-processor",
         "BP_OCI_LICENSES" to "AGPLv3",
-        "BP_OCI_DESCRIPTION" to "ETL Processor for bwHC MTB files"
+        "BP_OCI_DESCRIPTION" to "ETL Processor for MV § 64e and DNPM:DIP"
     ))
 }

deploy/docker-compose.yaml

@@ -18,6 +18,9 @@ services:
       APP_KAFKA_GROUP_ID: ${DNPM_KAFKA_GROUP_ID}
       APP_KAFKA_RESPONSE_TOPIC: ${DNPM_KAFKA_RESPONSE_TOPIC}
       APP_REST_URI: ${DNPM_BWHC_REST_URI}
+      APP_REST_USERNAME: ${DNPM_BWHC_REST_USERNAME}
+      APP_REST_PASSWORD: ${DNPM_BWHC_REST_PASSWORD}
+      APP_REST_IS_BWHC: ${DNPM_BWHC_REST_IS_BWHC}
       APP_SECURITY_ADMIN_USER: ${DNPM_ADMIN_USER}
       APP_SECURITY_ADMIN_PASSWORD: ${DNPM_ADMIN_PASSWORD}
       SPRING_DATASOURCE_URL: ${DNPM_DATASOURCE_URL}

deploy/env-sample.env

@@ -28,6 +28,9 @@ DNPM_DATASOURCE_URL=jdbc:mariadb://dnpm-monitor-db:3306/$DNPM_MARIADB_DB
 ## TARGET SYSTEMS CONFIG
 # in case of direct access to bwhc enter endpoint url here
 DNPM_BWHC_REST_URI=
+DNPM_BWHC_REST_USERNAME=
+DNPM_BWHC_REST_PASSWORD=
+DNPM_BWHC_REST_IS_BWHC=false
 
 # produce mtb files to this topic - values 'false' disabling kafka processing
 DNPM_KAFKA_TOPIC=false

dev-compose.yml

@@ -16,9 +16,15 @@ services:
       KAFKA_CFG_AUTO_CREATE_TOPICS_ENABLE: true
       KAFKA_CFG_CONTROLLER_QUORUM_VOTERS: 0@kafka:9093
       KAFKA_CFG_CONTROLLER_LISTENER_NAMES: CONTROLLER
+    healthcheck:
+      test: kafka-topics --bootstrap-server kafka:9092 --list
+      interval: 30s
+      timeout: 10s
+      retries: 3
 
+  ## Use AKHQ as Kafka web frontend
   akhq:
-    image: tchiotludo/akhq:0.21.0
+    image: tchiotludo/akhq:0.25.0
     environment:
       AKHQ_CONFIGURATION: |
         akhq:
@@ -32,6 +38,8 @@ services:
     ports:
       - "8084:8080"
 
+
+## For use with MariaDB
   mariadb:
     image: mariadb:10
     ports:
@@ -42,6 +50,7 @@ services:
       MARIADB_PASSWORD: dev
       MARIADB_ROOT_PASSWORD: dev
 
+## For use with Postgres
 #  postgres:
 #    image: postgres:alpine
 #    ports:

dev/docker-compose.dev.yml

@@ -2,31 +2,55 @@ version: '3.7'
 
 services:
 
-  zoo1:
-    image: zookeeper:3.8.0
-    hostname: zoo1
+  zoo:
+    image: zookeeper:3.9.2
+    restart: unless-stopped
     ports:
       - "2181:2181"
     environment:
       ZOO_MY_ID: 1
       ZOO_PORT: 2181
-      ZOO_SERVERS: server.1=zoo1:2888:3888;2181
+      ZOO_SERVERS: server.1=zoo:2888:3888;2181
 
-  kafka1:
-    image: confluentinc/cp-kafka:7.2.1
-    hostname: kafka1
+  kafka:
+    image: confluentinc/cp-kafka:7.6.1
     ports:
       - "9092:9092"
     environment:
-      KAFKA_ADVERTISED_LISTENERS: LISTENER_DOCKER_INTERNAL://kafka1:19092,LISTENER_DOCKER_EXTERNAL://${DOCKER_HOST_IP:-127.0.0.1}:9092
-      KAFKA_LISTENER_SECURITY_PROTOCOL_MAP: LISTENER_DOCKER_INTERNAL:PLAINTEXT,LISTENER_DOCKER_EXTERNAL:PLAINTEXT
+      KAFKA_ADVERTISED_LISTENERS: LISTENER_DOCKER_INTERNAL://kafka:19092,LISTENER_DOCKER_EXTERNAL://172.17.0.1:9093,LISTENER_EXTERNAL://127.0.0.1:9092
+      KAFKA_LISTENER_SECURITY_PROTOCOL_MAP: LISTENER_DOCKER_INTERNAL:PLAINTEXT,LISTENER_DOCKER_EXTERNAL:PLAINTEXT,LISTENER_EXTERNAL:PLAINTEXT
       KAFKA_INTER_BROKER_LISTENER_NAME: LISTENER_DOCKER_INTERNAL
-      KAFKA_ZOOKEEPER_CONNECT: "zoo1:2181"
+      KAFKA_ZOOKEEPER_CONNECT: zoo:2181
       KAFKA_BROKER_ID: 1
-      KAFKA_LOG4J_LOGGERS: "kafka.controller=INFO,kafka.producer.async.DefaultEventHandler=INFO,state.change.logger=INFO"
+      KAFKA_LOG4J_LOGGERS: kafka.controller=INFO,kafka.producer.async.DefaultEventHandler=INFO,state.change.logger=INFO
       KAFKA_OFFSETS_TOPIC_REPLICATION_FACTOR: 1
+      KAFKA_MESSAGE_MAX_BYTES: 5242880
+      KAFKA_REPLICA_FETCH_MAX_BYTES: 5242880
+      KAFKA_COMPRESSION_TYPE: gzip
     depends_on:
-      - zoo1
+      - zoo
+    healthcheck:
+      test: kafka-topics --bootstrap-server kafka:9092 --list
+      interval: 30s
+      timeout: 10s
+      retries: 3
+
+  akhq:
+    image: tchiotludo/akhq:0.25.0
+    environment:
+      AKHQ_CONFIGURATION: |
+        akhq:
+          ui-options:
+            topic.show-all-consumer-groups: true
+            topic-data.sort: NEWEST
+          connections:
+            docker-kafka-server:
+              properties:
+                bootstrap.servers: "kafka:19092"
+    ports:
+      - "9000:8080"
+    depends_on:
+      - kafka
 
   kafka-rest-proxy:
     image: confluentinc/cp-kafka-rest:7.2.1
@@ -40,8 +64,8 @@ services:
       KAFKA_REST_HOST_NAME: kafka-rest-proxy
       KAFKA_REST_BOOTSTRAP_SERVERS: PLAINTEXT://kafka1:19092
     depends_on:
-      - zoo1
-      - kafka1
+      - zoo
+      - kafka
 
   kafka-connect:
     image: confluentinc/cp-kafka-connect:7.2.1
@@ -67,24 +91,6 @@ services:
     #volumes:
     #  - ./connectors:/etc/kafka-connect/jars/
     depends_on:
-      - zoo1
-      - kafka1
+      - zoo
+      - kafka
       - kafka-rest-proxy
-
-  akhq:
-    image: tchiotludo/akhq:0.21.0
-    environment:
-      AKHQ_CONFIGURATION: |
-        akhq:
-          connections:
-            docker-kafka-server:
-              properties:
-                bootstrap.servers: "kafka1:19092"
-              connect:
-                - name: "kafka-connect"
-                  url: "http://kafka-connect:8083"
-    ports:
-      - "8084:8080"
-    depends_on:
-      - kafka1
-      - kafka-connect

gradle/wrapper/gradle-wrapper.properties

@@ -1,6 +1,6 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.6-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.13-bin.zip
 networkTimeout=10000
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists

settings.gradle.kts

@@ -1 +1 @@
-rootProject.name = "etl-processor"
+rootProject.name = "mv64e-etl-processor"

src/integrationTest/kotlin/dev/dnpm/etl/processor/EtlProcessorApplicationTests.kt

@@ -20,10 +20,11 @@
 package dev.dnpm.etl.processor
 
 import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.*
 import dev.dnpm.etl.processor.monitoring.RequestRepository
 import dev.dnpm.etl.processor.monitoring.RequestStatus
+import dev.dnpm.etl.processor.output.DnpmV2MtbFileRequest
 import dev.dnpm.etl.processor.output.MtbFileSender
+import dev.pcvolkmer.mv64e.mtb.*
 import org.assertj.core.api.Assertions.assertThat
 import org.junit.jupiter.api.BeforeEach
 import org.junit.jupiter.api.Nested
@@ -33,10 +34,10 @@ import org.mockito.kotlin.*
 import org.springframework.beans.factory.annotation.Autowired
 import org.springframework.boot.test.autoconfigure.web.servlet.AutoConfigureMockMvc
 import org.springframework.boot.test.context.SpringBootTest
-import org.springframework.boot.test.mock.mockito.MockBean
 import org.springframework.context.ApplicationContext
 import org.springframework.http.MediaType
 import org.springframework.test.context.TestPropertySource
+import org.springframework.test.context.bean.override.mockito.MockitoBean
 import org.springframework.test.context.junit.jupiter.SpringExtension
 import org.springframework.test.web.servlet.MockMvc
 import org.springframework.test.web.servlet.post
@@ -45,11 +46,12 @@ import org.testcontainers.junit.jupiter.Testcontainers
 @Testcontainers
 @ExtendWith(SpringExtension::class)
 @SpringBootTest
-@MockBean(MtbFileSender::class)
+@MockitoBean(types = [MtbFileSender::class])
 @TestPropertySource(
     properties = [
         "app.rest.uri=http://example.com",
-        "app.pseudonymize.generator=buildin"
+        "app.pseudonymize.generator=buildin",
+        "app.consent.service=none"
     ]
 )
 class EtlProcessorApplicationTests : AbstractTestcontainerTest() {
@@ -66,14 +68,15 @@ class EtlProcessorApplicationTests : AbstractTestcontainerTest() {
     @TestPropertySource(
         properties = [
             "app.pseudonymize.generator=buildin",
-            "app.transformations[0].path=diagnoses[*].icd10.version",
+            "app.consent.service=none",
+            "app.transformations[0].path=diagnoses[*].code.version",
             "app.transformations[0].from=2013",
             "app.transformations[0].to=2014",
         ]
     )
     inner class TransformationTest {
 
-        @MockBean
+        @MockitoBean
         private lateinit var mtbFileSender: MtbFileSender
 
         @Autowired
@@ -91,36 +94,33 @@ class EtlProcessorApplicationTests : AbstractTestcontainerTest() {
         fun mtbFileIsTransformed() {
             doAnswer {
                 MtbFileSender.Response(RequestStatus.SUCCESS)
-            }.whenever(mtbFileSender).send(any<MtbFileSender.MtbFileRequest>())
+            }.whenever(mtbFileSender).send(any<DnpmV2MtbFileRequest>())
 
-            val mtbFile = MtbFile.builder()
-                .withPatient(
+            val mtbFile = Mtb.builder()
+                .patient(
                     Patient.builder()
-                        .withId("TEST_12345678")
-                        .withBirthDate("2000-08-08")
-                        .withGender(Patient.Gender.MALE)
+                        .id("TEST_12345678")
                         .build()
                 )
-                .withConsent(
-                    Consent.builder()
-                        .withId("1")
-                        .withStatus(Consent.Status.ACTIVE)
-                        .withPatient("TEST_12345678")
+                .metadata(
+                    MvhMetadata
+                        .builder()
+                        .modelProjectConsent(
+                            ModelProjectConsent
+                                .builder()
+                                .provisions(
+                                    listOf(Provision.builder().type(ConsentProvision.PERMIT).purpose(ModelProjectConsentPurpose.SEQUENCING).build())
+                                ).build()
+                        )
                         .build()
                 )
-                .withEpisode(
-                    Episode.builder()
-                        .withId("1")
-                        .withPatient("TEST_12345678")
-                        .withPeriod(PeriodStart("2023-08-08"))
-                        .build()
-                )
-                .withDiagnoses(
+                .diagnoses(
                     listOf(
-                        Diagnosis.builder()
-                            .withId("1234")
-                            .withIcd10(Icd10.builder().withCode("F79.9").withVersion("2013").build())
-                            .build()
+                        MtbDiagnosis.builder()
+                            .id("1234")
+                            .patient(Reference.builder().id("TEST_12345678").build())
+                            .code(Coding.builder().code("F79.9").version("2013").build())
+                            .build(),
                     )
                 )
                 .build()
@@ -134,10 +134,10 @@ class EtlProcessorApplicationTests : AbstractTestcontainerTest() {
                 }
             }
 
-            val captor = argumentCaptor<MtbFileSender.MtbFileRequest>()
+            val captor = argumentCaptor<DnpmV2MtbFileRequest>()
             verify(mtbFileSender).send(captor.capture())
-            assertThat(captor.firstValue.mtbFile.diagnoses).hasSize(1).allMatch { diagnosis ->
-                diagnosis.icd10.version == "2014"
+            assertThat(captor.firstValue.content.diagnoses).hasSize(1).allMatch { diagnosis ->
+                diagnosis.code.version == "2014"
             }
         }
     }

src/integrationTest/kotlin/dev/dnpm/etl/processor/EtlProcessorArchTest.kt

@@ -0,0 +1,73 @@
+package dev.dnpm.etl.processor
+
+import com.tngtech.archunit.core.domain.JavaClasses
+import com.tngtech.archunit.core.importer.ClassFileImporter
+import com.tngtech.archunit.lang.syntax.ArchRuleDefinition.classes
+import com.tngtech.archunit.lang.syntax.ArchRuleDefinition.noClasses
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Test
+import org.springframework.data.repository.Repository
+
+class EtlProcessorArchTest {
+
+    private lateinit var noTestClasses: JavaClasses
+
+    @BeforeEach
+    fun setUp() {
+        this.noTestClasses = ClassFileImporter()
+            .withImportOption { !(it.contains("/test/") || it.contains("/integrationTest/")) }
+            .importPackages("dev.dnpm.etl.processor")
+    }
+
+    @Test
+    fun noClassesInInputPackageShouldDependOnMonitoringPackage() {
+        val rule = noClasses()
+            .that()
+            .resideInAPackage("..input")
+            .should().dependOnClassesThat()
+            .resideInAnyPackage("..monitoring")
+
+        rule.check(noTestClasses)
+    }
+
+    @Test
+    fun noClassesInInputPackageShouldDependOnRepositories() {
+        val rule = noClasses()
+            .that()
+            .resideInAPackage("..input")
+            .should().dependOnClassesThat().haveSimpleNameEndingWith("Repository")
+
+        rule.check(noTestClasses)
+    }
+
+    @Test
+    fun noClassesInOutputPackageShouldDependOnRepositories() {
+        val rule = noClasses()
+            .that()
+            .resideInAPackage("..output")
+            .should().dependOnClassesThat().haveSimpleNameEndingWith("Repository")
+
+        rule.check(noTestClasses)
+    }
+
+    @Test
+    fun noClassesInWebPackageShouldDependOnRepositories() {
+        val rule = noClasses()
+            .that()
+            .resideInAPackage("..web")
+            .should().dependOnClassesThat().haveSimpleNameEndingWith("Repository")
+
+        rule.check(noTestClasses)
+    }
+
+    @Test
+    fun repositoryClassNamesShouldEndWithRepository() {
+        val rule = classes()
+            .that()
+            .areInterfaces().and().areAssignableTo(Repository::class.java)
+            .should().haveSimpleNameEndingWith("Repository")
+
+        rule.check(noTestClasses)
+    }
+
+}

src/integrationTest/kotlin/dev/dnpm/etl/processor/config/AppConfigurationTest.kt

@@ -20,15 +20,18 @@
 package dev.dnpm.etl.processor.config
 
 import com.fasterxml.jackson.databind.ObjectMapper
+import dev.dnpm.etl.processor.consent.ConsentEvaluator
+import dev.dnpm.etl.processor.consent.GicsConsentService
+import dev.dnpm.etl.processor.consent.MtbFileConsentService
 import dev.dnpm.etl.processor.input.KafkaInputListener
 import dev.dnpm.etl.processor.monitoring.RequestRepository
 import dev.dnpm.etl.processor.output.KafkaMtbFileSender
 import dev.dnpm.etl.processor.output.RestMtbFileSender
 import dev.dnpm.etl.processor.pseudonym.AnonymizingGenerator
 import dev.dnpm.etl.processor.pseudonym.GpasPseudonymGenerator
+import dev.dnpm.etl.processor.security.TokenRepository
+import dev.dnpm.etl.processor.security.TokenService
 import dev.dnpm.etl.processor.services.RequestProcessor
-import dev.dnpm.etl.processor.services.TokenRepository
-import dev.dnpm.etl.processor.services.TokenService
 import org.assertj.core.api.Assertions.assertThat
 import org.junit.jupiter.api.Nested
 import org.junit.jupiter.api.Test
@@ -36,24 +39,26 @@ import org.junit.jupiter.api.assertThrows
 import org.springframework.beans.factory.NoSuchBeanDefinitionException
 import org.springframework.boot.autoconfigure.kafka.KafkaAutoConfiguration
 import org.springframework.boot.test.context.SpringBootTest
-import org.springframework.boot.test.mock.mockito.MockBean
-import org.springframework.boot.test.mock.mockito.MockBeans
 import org.springframework.context.ApplicationContext
 import org.springframework.retry.support.RetryTemplate
 import org.springframework.security.crypto.password.PasswordEncoder
 import org.springframework.security.provisioning.InMemoryUserDetailsManager
 import org.springframework.test.context.ContextConfiguration
 import org.springframework.test.context.TestPropertySource
+import org.springframework.test.context.bean.override.mockito.MockitoBean
 
 @SpringBootTest
-@ContextConfiguration(classes = [
+@ContextConfiguration(
+    classes = [
         AppConfiguration::class,
         AppSecurityConfiguration::class,
         KafkaAutoConfiguration::class,
         AppKafkaConfiguration::class,
-    AppRestConfiguration::class
-])
-@MockBean(ObjectMapper::class)
+        AppRestConfiguration::class,
+        ConsentEvaluator::class
+    ]
+)
+@MockitoBean(types = [ObjectMapper::class])
 @TestPropertySource(
     properties = [
         "app.pseudonymize.generator=BUILDIN",
@@ -86,7 +91,7 @@ class AppConfigurationTest {
             "app.kafka.group-id=test"
         ]
     )
-    @MockBean(RequestRepository::class)
+    @MockitoBean(types = [RequestRepository::class])
     inner class AppConfigurationKafkaTest(private val context: ApplicationContext) {
 
         @Test
@@ -145,7 +150,7 @@ class AppConfigurationTest {
             "app.kafka.group-id=test"
         ]
     )
-    @MockBean(RequestProcessor::class)
+    @MockitoBean(types = [RequestProcessor::class])
     inner class AppConfigurationUsingKafkaInputTest(private val context: ApplicationContext) {
 
         @Test
@@ -181,40 +186,7 @@ class AppConfigurationTest {
         @Nested
         @TestPropertySource(
             properties = [
-                "app.pseudonymize.generator=",
-                "app.pseudonymizer=buildin",
-            ]
-        )
-        inner class AppConfigurationPseudonymizerBuildinTest(private val context: ApplicationContext) {
-
-            @Test
-            fun shouldUseConfiguredGenerator() {
-                assertThat(context.getBean(AnonymizingGenerator::class.java)).isNotNull
-            }
-
-        }
-
-        @Nested
-        @TestPropertySource(
-            properties = [
-                "app.pseudonymize.generator=",
-                "app.pseudonymizer=gpas",
-            ]
-        )
-        inner class AppConfigurationPseudonymizerGpasTest(private val context: ApplicationContext) {
-
-            @Test
-            fun shouldUseConfiguredGenerator() {
-                assertThat(context.getBean(GpasPseudonymGenerator::class.java)).isNotNull
-            }
-
-        }
-
-        @Nested
-        @TestPropertySource(
-            properties = [
-                "app.pseudonymize.generator=buildin",
-                "app.pseudonymizer=",
+                "app.pseudonymize.generator=buildin"
             ]
         )
         inner class AppConfigurationPseudonymizeGeneratorBuildinTest(private val context: ApplicationContext) {
@@ -229,8 +201,7 @@ class AppConfigurationTest {
         @Nested
         @TestPropertySource(
             properties = [
-                "app.pseudonymize.generator=gpas",
-                "app.pseudonymizer=",
+                "app.pseudonymize.generator=gpas"
             ]
         )
         inner class AppConfigurationPseudonymizeGeneratorGpasTest(private val context: ApplicationContext) {
@@ -248,11 +219,13 @@ class AppConfigurationTest {
                 "app.security.enable-tokens=true"
             ]
         )
-        @MockBeans(value = [
-            MockBean(InMemoryUserDetailsManager::class),
-            MockBean(PasswordEncoder::class),
-            MockBean(TokenRepository::class)
-        ])
+        @MockitoBean(
+            types = [
+                InMemoryUserDetailsManager::class,
+                PasswordEncoder::class,
+                TokenRepository::class
+            ]
+        )
         inner class AppConfigurationTokenEnabledTest(private val context: ApplicationContext) {
 
             @Test
@@ -263,11 +236,13 @@ class AppConfigurationTest {
         }
 
         @Nested
-        @MockBeans(value = [
-            MockBean(InMemoryUserDetailsManager::class),
-            MockBean(PasswordEncoder::class),
-            MockBean(TokenRepository::class)
-        ])
+        @MockitoBean(
+            types = [
+                InMemoryUserDetailsManager::class,
+                PasswordEncoder::class,
+                TokenRepository::class
+            ]
+        )
         inner class AppConfigurationTokenDisabledTest(private val context: ApplicationContext) {
 
             @Test
@@ -305,4 +280,30 @@ class AppConfigurationTest {
 
     }
 
+    @Nested
+    @TestPropertySource(
+        properties = [
+            "app.consent.service=GICS",
+            "app.consent.gics.uri=http://localhost:9000",
+        ]
+    )
+    inner class AppConfigurationConsentGicsTest(private val context: ApplicationContext) {
+
+        @Test
+        fun shouldUseConfiguredGenerator() {
+            assertThat(context.getBean(GicsConsentService::class.java)).isNotNull
+        }
+
+    }
+
+    @Nested
+    inner class AppConfigurationConsentBuildinTest(private val context: ApplicationContext) {
+
+        @Test
+        fun shouldUseConfiguredGenerator() {
+            assertThat(context.getBean(MtbFileConsentService::class.java)).isNotNull
+        }
+
+    }
+
 }

src/integrationTest/kotlin/dev/dnpm/etl/processor/helpers.kt

@@ -0,0 +1,30 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor
+
+import org.mockito.ArgumentMatchers
+
+@Suppress("UNCHECKED_CAST")
+inline fun <reified T> anyValueClass(): T {
+    val unboxedClass = T::class.java.declaredFields.first().type
+    return ArgumentMatchers.any(unboxedClass as Class<T>)
+        ?: T::class.java.getDeclaredMethod("box-impl", unboxedClass)
+            .invoke(null, null) as T
+}

src/integrationTest/kotlin/dev/dnpm/etl/processor/input/MtbFileRestControllerTest.kt

@@ -20,41 +20,47 @@
 package dev.dnpm.etl.processor.input
 
 import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.*
 import dev.dnpm.etl.processor.config.AppSecurityConfiguration
+import dev.dnpm.etl.processor.consent.ConsentEvaluation
+import dev.dnpm.etl.processor.consent.ConsentEvaluator
+import dev.dnpm.etl.processor.consent.MtbFileConsentService
+import dev.dnpm.etl.processor.consent.TtpConsentStatus
+import dev.dnpm.etl.processor.security.TokenRepository
+import dev.dnpm.etl.processor.security.UserRoleRepository
 import dev.dnpm.etl.processor.services.RequestProcessor
-import dev.dnpm.etl.processor.services.TokenRepository
+import dev.pcvolkmer.mv64e.mtb.*
 import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Nested
 import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.extension.ExtendWith
-import org.mockito.ArgumentMatchers.anyString
 import org.mockito.junit.jupiter.MockitoExtension
-import org.mockito.kotlin.any
-import org.mockito.kotlin.never
-import org.mockito.kotlin.times
-import org.mockito.kotlin.verify
+import org.mockito.kotlin.*
 import org.springframework.beans.factory.annotation.Autowired
 import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest
-import org.springframework.boot.test.mock.mockito.MockBean
 import org.springframework.http.MediaType
+import org.springframework.security.oauth2.client.registration.ClientRegistrationRepository
 import org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.anonymous
 import org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.user
 import org.springframework.test.context.ContextConfiguration
 import org.springframework.test.context.TestPropertySource
+import org.springframework.test.context.bean.override.mockito.MockitoBean
 import org.springframework.test.context.junit.jupiter.SpringExtension
 import org.springframework.test.web.servlet.MockMvc
 import org.springframework.test.web.servlet.delete
 import org.springframework.test.web.servlet.post
+import java.time.Instant
+import java.util.*
 
 @WebMvcTest(controllers = [MtbFileRestController::class])
 @ExtendWith(value = [MockitoExtension::class, SpringExtension::class])
 @ContextConfiguration(
     classes = [
         MtbFileRestController::class,
-        AppSecurityConfiguration::class
+        AppSecurityConfiguration::class,
+        MtbFileConsentService::class
     ]
 )
-@MockBean(TokenRepository::class, RequestProcessor::class)
+@MockitoBean(types = [TokenRepository::class, RequestProcessor::class,  ConsentEvaluator::class])
 @TestPropertySource(
     properties = [
         "app.pseudonymize.generator=BUILDIN",
@@ -65,17 +71,23 @@ import org.springframework.test.web.servlet.post
 )
 class MtbFileRestControllerTest {
 
-    private lateinit var mockMvc: MockMvc
-
-    private lateinit var requestProcessor: RequestProcessor
+    lateinit var mockMvc: MockMvc
+    lateinit var requestProcessor: RequestProcessor
+    lateinit var consentEvaluator: ConsentEvaluator
 
     @BeforeEach
     fun setup(
         @Autowired mockMvc: MockMvc,
-        @Autowired requestProcessor: RequestProcessor
+        @Autowired requestProcessor: RequestProcessor,
+        @Autowired consentEvaluator: ConsentEvaluator
     ) {
         this.mockMvc = mockMvc
         this.requestProcessor = requestProcessor
+        this.consentEvaluator = consentEvaluator
+
+        doAnswer {
+            ConsentEvaluation(TtpConsentStatus.BROAD_CONSENT_GIVEN, true)
+        }.whenever(consentEvaluator).check(any())
     }
 
     @Test
@@ -88,7 +100,20 @@ class MtbFileRestControllerTest {
             status { isAccepted() }
         }
 
-        verify(requestProcessor, times(1)).processMtbFile(any())
+        verify(requestProcessor, times(1)).processMtbFile(any<Mtb>())
+    }
+
+    @Test
+    fun testShouldGrantPermissionToSendMtbFileToAdminUser() {
+        mockMvc.post("/mtbfile") {
+            with(user("onkostarserver").roles("ADMIN"))
+            contentType = MediaType.APPLICATION_JSON
+            content = ObjectMapper().writeValueAsString(mtbFile)
+        }.andExpect {
+            status { isAccepted() }
+        }
+
+        verify(requestProcessor, times(1)).processMtbFile(any<Mtb>())
     }
 
     @Test
@@ -101,7 +126,20 @@ class MtbFileRestControllerTest {
             status { isUnauthorized() }
         }
 
-        verify(requestProcessor, never()).processMtbFile(any())
+        verify(requestProcessor, never()).processMtbFile(any<Mtb>())
+    }
+
+    @Test
+    fun testShouldDenyPermissionToSendMtbFileForUser() {
+        mockMvc.post("/mtbfile") {
+            with(user("fakeuser").roles("USER"))
+            contentType = MediaType.APPLICATION_JSON
+            content = ObjectMapper().writeValueAsString(mtbFile)
+        }.andExpect {
+            status { isForbidden() }
+        }
+
+        verify(requestProcessor, never()).processMtbFile(any<Mtb>())
     }
 
     @Test
@@ -112,7 +150,7 @@ class MtbFileRestControllerTest {
             status { isAccepted() }
         }
 
-        verify(requestProcessor, times(1)).processDeletion(anyString())
+        verify(requestProcessor, times(1)).processDeletion(anyValueClass(),  eq(TtpConsentStatus.UNKNOWN_CHECK_FILE))
     }
 
     @Test
@@ -123,32 +161,64 @@ class MtbFileRestControllerTest {
             status { isUnauthorized() }
         }
 
-        verify(requestProcessor, never()).processDeletion(anyString())
+        verify(requestProcessor, never()).processDeletion(anyValueClass(), any())
+    }
+
+    @Nested
+    @MockitoBean(types = [UserRoleRepository::class, ClientRegistrationRepository::class])
+    @TestPropertySource(
+        properties = [
+            "app.pseudonymize.generator=BUILDIN",
+            "app.security.admin-user=admin",
+            "app.security.admin-password={noop}very-secret",
+            "app.security.enable-tokens=true",
+            "app.security.enable-oidc=true"
+        ]
+    )
+    inner class WithOidcEnabled {
+        @Test
+        fun testShouldGrantPermissionToSendMtbFileToAdminUser() {
+            mockMvc.post("/mtbfile") {
+                with(user("onkostarserver").roles("ADMIN"))
+                contentType = MediaType.APPLICATION_JSON
+                content = ObjectMapper().writeValueAsString(mtbFile)
+            }.andExpect {
+                status { isAccepted() }
+            }
+
+            verify(requestProcessor, times(1)).processMtbFile(any<Mtb>())
+        }
+
+        @Test
+        fun testShouldGrantPermissionToSendMtbFileToUser() {
+            mockMvc.post("/mtbfile") {
+                with(user("onkostarserver").roles("USER"))
+                contentType = MediaType.APPLICATION_JSON
+                content = ObjectMapper().writeValueAsString(mtbFile)
+            }.andExpect {
+                status { isAccepted() }
+            }
+
+            verify(requestProcessor, times(1)).processMtbFile(any<Mtb>())
+        }
     }
 
     companion object {
 
-        val mtbFile: MtbFile = MtbFile.builder()
-            .withPatient(
+        val mtbFile = Mtb.builder()
+            .patient(
                 Patient.builder()
-                    .withId("PID")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
+                    .id("PID")
                     .build()
             )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.ACTIVE)
-                    .withPatient("PID")
+            .episodesOfCare(
+                listOf(
+                    MtbEpisodeOfCare.builder()
+                        .id("1")
+                        .patient(Reference.builder().id("PID").build())
+                        .period(PeriodDate.builder().start(Date.from(Instant.parse("2023-08-08T02:00:00.00Z"))).build())
                         .build()
                 )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("PID")
-                    .withPeriod(PeriodStart("2023-08-08"))
-                    .build()
             )
             .build()
 

src/integrationTest/kotlin/dev/dnpm/etl/processor/monitoring/RequestRepositoryTest.kt

@@ -0,0 +1,75 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.monitoring
+
+import dev.dnpm.etl.processor.*
+import dev.dnpm.etl.processor.output.MtbFileSender
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Test
+import org.junit.jupiter.api.extension.ExtendWith
+import org.springframework.beans.factory.annotation.Autowired
+import org.springframework.boot.test.autoconfigure.data.jdbc.DataJdbcTest
+import org.springframework.boot.test.autoconfigure.jdbc.AutoConfigureTestDatabase
+import org.springframework.test.context.TestPropertySource
+import org.springframework.test.context.bean.override.mockito.MockitoBean
+import org.springframework.test.context.junit.jupiter.SpringExtension
+import org.springframework.transaction.annotation.Transactional
+import org.testcontainers.junit.jupiter.Testcontainers
+import java.time.Instant
+
+@Testcontainers
+@ExtendWith(SpringExtension::class)
+@DataJdbcTest
+@AutoConfigureTestDatabase(replace = AutoConfigureTestDatabase.Replace.NONE)
+@Transactional
+@MockitoBean(types = [MtbFileSender::class])
+@TestPropertySource(
+    properties = [
+        "app.pseudonymize.generator=buildin",
+        "app.rest.uri=http://example.com"
+    ]
+)
+class RequestRepositoryTest : AbstractTestcontainerTest() {
+
+    private lateinit var requestRepository: RequestRepository
+
+    @BeforeEach
+    fun setUp(
+        @Autowired requestRepository: RequestRepository
+    ) {
+        this.requestRepository = requestRepository
+    }
+
+    @Test
+    fun shouldSaveRequest() {
+        val request = Request(
+            randomRequestId(),
+            PatientPseudonym("TEST_12345678901"),
+            PatientId("P1"),
+            Fingerprint("0123456789abcdef1"),
+            RequestType.MTB_FILE,
+            RequestStatus.WARNING,
+            Instant.parse("2023-07-07T00:00:00Z")
+        )
+
+        requestRepository.save(request)
+    }
+
+}

src/integrationTest/kotlin/dev/dnpm/etl/processor/pseudonym/GpasPseudonymGeneratorTest.kt

@@ -0,0 +1,147 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.pseudonym
+
+import dev.dnpm.etl.processor.config.AppFhirConfig
+import dev.dnpm.etl.processor.config.GPasConfigProperties
+import org.assertj.core.api.Assertions.assertThat
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Test
+import org.junit.jupiter.api.assertThrows
+import org.springframework.http.HttpHeaders
+import org.springframework.http.HttpMethod
+import org.springframework.http.HttpStatus
+import org.springframework.retry.policy.SimpleRetryPolicy
+import org.springframework.retry.support.RetryTemplateBuilder
+import org.springframework.test.web.client.MockRestServiceServer
+import org.springframework.test.web.client.match.MockRestRequestMatchers.method
+import org.springframework.test.web.client.match.MockRestRequestMatchers.requestTo
+import org.springframework.test.web.client.response.MockRestResponseCreators.withException
+import org.springframework.test.web.client.response.MockRestResponseCreators.withStatus
+import org.springframework.web.client.RestTemplate
+import java.io.IOException
+
+class GpasPseudonymGeneratorTest {
+
+    private lateinit var mockRestServiceServer: MockRestServiceServer
+    private lateinit var generator: GpasPseudonymGenerator
+    private lateinit var restTemplate: RestTemplate
+    private var appFhirConfig: AppFhirConfig = AppFhirConfig()
+
+    @BeforeEach
+    fun setup() {
+        val retryTemplate = RetryTemplateBuilder().customPolicy(SimpleRetryPolicy(1)).build()
+        val gPasConfigProperties = GPasConfigProperties(
+            "https://localhost:9990/ttp-fhir/fhir/gpas",
+            "test", "test2",
+            null,
+            null
+        )
+
+        this.restTemplate = RestTemplate()
+        this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate)
+        this.generator =
+            GpasPseudonymGenerator(gPasConfigProperties, retryTemplate, restTemplate, appFhirConfig)
+    }
+
+    @Test
+    fun shouldReturnExpectedPseudonym() {
+        this.mockRestServiceServer.expect {
+            method(HttpMethod.POST)
+            requestTo("https://localhost/ttp-fhir/fhir/gpas/\$pseudonymizeAllowCreate")
+        }.andRespond {
+            withStatus(HttpStatus.OK).body(
+                getDummyResponseBody(
+                    "1234",
+                    "test",
+                    "test1234ABCDEF567890"
+                )
+            )
+                .createResponse(it)
+        }
+
+        assertThat(this.generator.generate("ID1234")).isEqualTo("test1234ABCDEF567890")
+    }
+
+    @Test
+    fun shouldThrowExceptionIfGpasNotAvailable() {
+        this.mockRestServiceServer.expect {
+            method(HttpMethod.POST)
+            requestTo("https://localhost/ttp-fhir/fhir/gpas/\$pseudonymizeAllowCreate")
+        }.andRespond {
+            withException(IOException("Simulated IO error")).createResponse(it)
+        }
+
+        assertThrows<PseudonymRequestFailed> { this.generator.generate("ID1234") }
+    }
+
+    @Test
+    fun shouldThrowExceptionIfGpasDoesNotReturn2xxResponse() {
+        this.mockRestServiceServer.expect {
+            method(HttpMethod.POST)
+            requestTo("https://localhost/ttp-fhir/fhir/gpas/\$pseudonymizeAllowCreate")
+        }.andRespond {
+            withStatus(HttpStatus.FOUND)
+                .header(
+                    HttpHeaders.LOCATION,
+                    "https://localhost/ttp-fhir/fhir/gpas/\$pseudonymizeAllowCreate"
+                )
+                .createResponse(it)
+        }
+
+        assertThrows<PseudonymRequestFailed> { this.generator.generate("ID1234") }
+    }
+
+    companion object {
+
+        fun getDummyResponseBody(original: String, target: String, pseudonym: String) = """{
+          "resourceType": "Parameters",
+          "parameter": [
+            {
+              "name": "pseudonym",
+              "part": [
+                {
+                  "name": "original",
+                  "valueIdentifier": {
+                    "system": "https://ths-greifswald.de/gpas",
+                    "value": "$original"
+                  }
+                },
+                {
+                  "name": "target",
+                  "valueIdentifier": {
+                    "system": "https://ths-greifswald.de/gpas",
+                    "value": "$target"
+                  }
+                },
+                {
+                  "name": "pseudonym",
+                  "valueIdentifier": {
+                    "system": "https://ths-greifswald.de/gpas",
+                    "value": "$pseudonym"
+                  }
+                }
+              ]
+            }
+          ]
+        }""".trimIndent()
+
+    }
+}

src/integrationTest/kotlin/dev/dnpm/etl/processor/services/RequestServiceIntegrationTest.kt

@@ -19,7 +19,7 @@
 
 package dev.dnpm.etl.processor.services
 
-import dev.dnpm.etl.processor.AbstractTestcontainerTest
+import dev.dnpm.etl.processor.*
 import dev.dnpm.etl.processor.monitoring.Request
 import dev.dnpm.etl.processor.monitoring.RequestRepository
 import dev.dnpm.etl.processor.monitoring.RequestStatus
@@ -31,19 +31,18 @@ import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.extension.ExtendWith
 import org.springframework.beans.factory.annotation.Autowired
 import org.springframework.boot.test.context.SpringBootTest
-import org.springframework.boot.test.mock.mockito.MockBean
 import org.springframework.test.context.TestPropertySource
+import org.springframework.test.context.bean.override.mockito.MockitoBean
 import org.springframework.test.context.junit.jupiter.SpringExtension
 import org.springframework.transaction.annotation.Transactional
 import org.testcontainers.junit.jupiter.Testcontainers
 import java.time.Instant
-import java.util.*
 
 @Testcontainers
 @ExtendWith(SpringExtension::class)
 @SpringBootTest
 @Transactional
-@MockBean(MtbFileSender::class)
+@MockitoBean(types = [MtbFileSender::class])
 @TestPropertySource(
     properties = [
         "app.pseudonymize.generator=buildin",
@@ -66,7 +65,7 @@ class RequestServiceIntegrationTest : AbstractTestcontainerTest() {
 
     @Test
     fun shouldResultInEmptyRequestList() {
-        val actual = requestService.allRequestsByPatientPseudonym("TEST_12345678901")
+        val actual = requestService.allRequestsByPatientPseudonym(TEST_PATIENT_PSEUDONYM)
 
         assertThat(actual).isEmpty()
     }
@@ -76,33 +75,33 @@ class RequestServiceIntegrationTest : AbstractTestcontainerTest() {
         this.requestRepository.saveAll(
             listOf(
                 Request(
-                    uuid = UUID.randomUUID().toString(),
-                    patientId = "TEST_12345678901",
-                    pid = "P1",
-                    fingerprint = "0123456789abcdef1",
-                    type = RequestType.MTB_FILE,
-                    status = RequestStatus.SUCCESS,
-                    processedAt = Instant.parse("2023-07-07T02:00:00Z")
+                    randomRequestId(),
+                    PatientPseudonym("TEST_12345678901"),
+                    PatientId("P1"),
+                    Fingerprint("0123456789abcdef1"),
+                    RequestType.MTB_FILE,
+                    RequestStatus.SUCCESS,
+                    Instant.parse("2023-07-07T02:00:00Z")
                 ),
                 // Should be ignored - wrong patient ID -->
                 Request(
-                    uuid = UUID.randomUUID().toString(),
-                    patientId = "TEST_12345678902",
-                    pid = "P2",
-                    fingerprint = "0123456789abcdef2",
-                    type = RequestType.MTB_FILE,
-                    status = RequestStatus.WARNING,
-                    processedAt = Instant.parse("2023-08-08T00:00:00Z")
+                    randomRequestId(),
+                    PatientPseudonym("TEST_12345678902"),
+                    PatientId("P2"),
+                    Fingerprint("0123456789abcdef2"),
+                    RequestType.MTB_FILE,
+                    RequestStatus.WARNING,
+                    Instant.parse("2023-08-08T00:00:00Z")
                 ),
                 // <--
                 Request(
-                    uuid = UUID.randomUUID().toString(),
-                    patientId = "TEST_12345678901",
-                    pid = "P2",
-                    fingerprint = "0123456789abcdee1",
-                    type = RequestType.DELETE,
-                    status = RequestStatus.SUCCESS,
-                    processedAt = Instant.parse("2023-08-08T02:00:00Z")
+                    randomRequestId(),
+                    PatientPseudonym("TEST_12345678901"),
+                    PatientId("P2"),
+                    Fingerprint("0123456789abcdee1"),
+                    RequestType.DELETE,
+                    RequestStatus.SUCCESS,
+                    Instant.parse("2023-08-08T02:00:00Z")
                 )
             )
         )
@@ -112,18 +111,18 @@ class RequestServiceIntegrationTest : AbstractTestcontainerTest() {
     fun shouldResultInSortedRequestList() {
         setupTestData()
 
-        val actual = requestService.allRequestsByPatientPseudonym("TEST_12345678901")
+        val actual = requestService.allRequestsByPatientPseudonym(TEST_PATIENT_PSEUDONYM)
 
         assertThat(actual).hasSize(2)
-        assertThat(actual[0].fingerprint).isEqualTo("0123456789abcdee1")
-        assertThat(actual[1].fingerprint).isEqualTo("0123456789abcdef1")
+        assertThat(actual[0].fingerprint).isEqualTo(Fingerprint("0123456789abcdee1"))
+        assertThat(actual[1].fingerprint).isEqualTo(Fingerprint("0123456789abcdef1"))
     }
 
     @Test
     fun shouldReturnDeleteRequestAsLastRequest() {
         setupTestData()
 
-        val actual = requestService.isLastRequestWithKnownStatusDeletion("TEST_12345678901")
+        val actual = requestService.isLastRequestWithKnownStatusDeletion(TEST_PATIENT_PSEUDONYM)
 
         assertThat(actual).isTrue()
     }
@@ -132,10 +131,14 @@ class RequestServiceIntegrationTest : AbstractTestcontainerTest() {
     fun shouldReturnLastMtbFileRequest() {
         setupTestData()
 
-        val actual = requestService.lastMtbFileRequestForPatientPseudonym("TEST_12345678901")
+        val actual = requestService.lastMtbFileRequestForPatientPseudonym(TEST_PATIENT_PSEUDONYM)
 
         assertThat(actual).isNotNull
-        assertThat(actual?.fingerprint).isEqualTo("0123456789abcdef1")
+        assertThat(actual?.fingerprint).isEqualTo(Fingerprint("0123456789abcdef1"))
+    }
+
+    companion object {
+        val TEST_PATIENT_PSEUDONYM = PatientPseudonym("TEST_12345678901")
     }
 
 }

src/integrationTest/kotlin/dev/dnpm/etl/processor/web/ConfigControllerTest.kt

@@ -21,30 +21,50 @@ package dev.dnpm.etl.processor.web
 
 import dev.dnpm.etl.processor.config.AppConfiguration
 import dev.dnpm.etl.processor.config.AppSecurityConfiguration
-import dev.dnpm.etl.processor.monitoring.ConnectionCheckService
+import dev.dnpm.etl.processor.monitoring.ConnectionCheckResult
+import dev.dnpm.etl.processor.monitoring.GIcsConnectionCheckService
+import dev.dnpm.etl.processor.monitoring.GPasConnectionCheckService
 import dev.dnpm.etl.processor.monitoring.RestConnectionCheckService
 import dev.dnpm.etl.processor.output.MtbFileSender
 import dev.dnpm.etl.processor.pseudonym.Generator
+import dev.dnpm.etl.processor.security.Role
+import dev.dnpm.etl.processor.security.TokenService
+import dev.dnpm.etl.processor.security.UserRoleService
 import dev.dnpm.etl.processor.services.RequestProcessor
-import dev.dnpm.etl.processor.services.TokenRepository
 import dev.dnpm.etl.processor.services.TransformationService
+import org.assertj.core.api.Assertions.assertThat
+import org.htmlunit.WebClient
+import org.htmlunit.html.HtmlPage
 import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Nested
 import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.extension.ExtendWith
+import org.mockito.ArgumentMatchers.anyString
 import org.mockito.junit.jupiter.MockitoExtension
+import org.mockito.kotlin.argumentCaptor
+import org.mockito.kotlin.times
+import org.mockito.kotlin.verify
+import org.mockito.kotlin.whenever
 import org.springframework.beans.factory.annotation.Autowired
 import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest
-import org.springframework.boot.test.mock.mockito.MockBean
 import org.springframework.http.HttpHeaders
 import org.springframework.http.MediaType
+import org.springframework.http.MediaType.TEXT_EVENT_STREAM
+import org.springframework.security.test.context.support.WithMockUser
 import org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.anonymous
 import org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.user
 import org.springframework.test.context.ContextConfiguration
 import org.springframework.test.context.TestPropertySource
+import org.springframework.test.context.bean.override.mockito.MockitoBean
 import org.springframework.test.context.junit.jupiter.SpringExtension
-import org.springframework.test.web.servlet.MockMvc
-import org.springframework.test.web.servlet.get
+import org.springframework.test.web.reactive.server.WebTestClient
+import org.springframework.test.web.servlet.*
+import org.springframework.test.web.servlet.client.MockMvcWebTestClient
+import org.springframework.test.web.servlet.htmlunit.MockMvcWebClientBuilder
+import org.springframework.web.context.WebApplicationContext
 import reactor.core.publisher.Sinks
+import reactor.test.StepVerifier
+import java.time.Instant
 
 abstract class MockSink : Sinks.Many<Boolean>
 
@@ -59,44 +79,51 @@ abstract class MockSink : Sinks.Many<Boolean>
 )
 @TestPropertySource(
     properties = [
-        "app.pseudonymize.generator=BUILDIN",
-        "app.security.admin-user=admin",
-        "app.security.admin-password={noop}very-secret",
-        "app.security.enable-tokens=true"
+        "app.pseudonymize.generator=BUILDIN"
     ]
 )
-@MockBean(name = "configsUpdateProducer", classes = [MockSink::class])
-@MockBean(
+@MockitoBean(name = "configsUpdateProducer", types = [MockSink::class])
+@MockitoBean(
+    types = [
         Generator::class,
         MtbFileSender::class,
-    ConnectionCheckService::class,
         RequestProcessor::class,
         TransformationService::class,
-    TokenRepository::class,
-    RestConnectionCheckService::class
+        GPasConnectionCheckService::class,
+        RestConnectionCheckService::class,
+        GIcsConnectionCheckService::class
+    ]
 )
 class ConfigControllerTest {
 
     private lateinit var mockMvc: MockMvc
+    private lateinit var webClient: WebClient
 
     private lateinit var requestProcessor: RequestProcessor
+    private lateinit var connectionCheckUpdateProducer: Sinks.Many<ConnectionCheckResult>
 
     @BeforeEach
     fun setup(
         @Autowired mockMvc: MockMvc,
-        @Autowired requestProcessor: RequestProcessor
+        @Autowired requestProcessor: RequestProcessor,
+        @Autowired connectionCheckUpdateProducer: Sinks.Many<ConnectionCheckResult>
     ) {
         this.mockMvc = mockMvc
+        this.webClient = MockMvcWebClientBuilder.mockMvcSetup(mockMvc).build()
         this.requestProcessor = requestProcessor
+        this.connectionCheckUpdateProducer = connectionCheckUpdateProducer
+
+        webClient.options.isThrowExceptionOnScriptError = false
     }
 
     @Test
-    fun testShouldShowConfigPageIfLoggedIn() {
+    fun testShouldRequestConfigPageIfLoggedIn() {
         mockMvc.get("/configs") {
             with(user("admin").roles("ADMIN"))
             accept(MediaType.TEXT_HTML)
         }.andExpect {
             status { isOk() }
+            view { name("configs") }
         }
     }
 
@@ -113,4 +140,244 @@ class ConfigControllerTest {
         }
     }
 
+    @Nested
+    @TestPropertySource(
+        properties = [
+            "app.security.enable-tokens=true",
+            "app.security.admin-user=admin"
+        ]
+    )
+    @MockitoBean(
+        types = [
+            TokenService::class
+        ]
+    )
+    inner class WithTokensEnabled {
+        private lateinit var tokenService: TokenService
+
+        @BeforeEach
+        fun setup(
+            @Autowired tokenService: TokenService
+        ) {
+            webClient.options.isThrowExceptionOnScriptError = false
+
+            this.tokenService = tokenService
+        }
+
+        @Test
+        fun testShouldSaveNewToken() {
+            mockMvc.post("/configs/tokens") {
+                with(user("admin").roles("ADMIN"))
+                accept(MediaType.TEXT_HTML)
+                contentType = MediaType.APPLICATION_FORM_URLENCODED
+                content = "name=Testtoken"
+            }.andExpect {
+                status { is2xxSuccessful() }
+                view { name("configs/tokens") }
+            }
+
+            val captor = argumentCaptor<String>()
+            verify(tokenService, times(1)).addToken(captor.capture())
+
+            assertThat(captor.firstValue).isEqualTo("Testtoken")
+        }
+
+        @Test
+        fun testShouldNotSaveTokenWithExstingName() {
+            whenever(tokenService.addToken(anyString())).thenReturn(
+                Result.failure(
+                    RuntimeException(
+                        "Testfailure"
+                    )
+                )
+            )
+
+            mockMvc.post("/configs/tokens") {
+                with(user("admin").roles("ADMIN"))
+                accept(MediaType.TEXT_HTML)
+                contentType = MediaType.APPLICATION_FORM_URLENCODED
+                content = "name=Testtoken"
+            }.andExpect {
+                status { is2xxSuccessful() }
+                view { name("configs/tokens") }
+            }
+
+            val captor = argumentCaptor<String>()
+            verify(tokenService, times(1)).addToken(captor.capture())
+
+            assertThat(captor.firstValue).isEqualTo("Testtoken")
+        }
+
+        @Test
+        fun testShouldDeleteToken() {
+            mockMvc.delete("/configs/tokens/42") {
+                with(user("admin").roles("ADMIN"))
+                accept(MediaType.TEXT_HTML)
+            }.andExpect {
+                status { is2xxSuccessful() }
+                view { name("configs/tokens") }
+            }
+
+            val captor = argumentCaptor<Long>()
+            verify(tokenService, times(1)).deleteToken(captor.capture())
+
+            assertThat(captor.firstValue).isEqualTo(42)
+        }
+
+        @Test
+        @WithMockUser(username = "admin", roles = ["ADMIN"])
+        fun testShouldRenderConfigPageWithTokens() {
+            val page = webClient.getPage<HtmlPage>("http://localhost/configs")
+            assertThat(
+                page.getElementById("tokens")
+            ).isNotNull
+        }
+    }
+
+    @Nested
+    @TestPropertySource(
+        properties = [
+            "app.security.enable-tokens=false"
+        ]
+    )
+    inner class WithTokensDisabled {
+        @BeforeEach
+        fun setup() {
+            webClient.options.isThrowExceptionOnScriptError = false
+        }
+
+        @Test
+        @WithMockUser(username = "admin", roles = ["ADMIN"])
+        fun testShouldRenderConfigPageWithoutTokens() {
+            val page = webClient.getPage<HtmlPage>("http://localhost/configs")
+            assertThat(
+                page.getElementById("tokens")
+            ).isNull()
+        }
+    }
+
+    @Nested
+    @TestPropertySource(
+        properties = [
+            "app.security.enable-tokens=false",
+            "app.security.admin-user=admin",
+            "app.security.admin-password={noop}very-secret"
+        ]
+    )
+    @MockitoBean(
+        types = [
+            UserRoleService::class
+        ]
+    )
+    inner class WithUserRolesEnabled {
+        private lateinit var userRoleService: UserRoleService
+
+        @BeforeEach
+        fun setup(
+            @Autowired userRoleService: UserRoleService
+        ) {
+            webClient.options.isThrowExceptionOnScriptError = false
+
+            this.userRoleService = userRoleService
+        }
+
+        @Test
+        fun testShouldDeleteUserRole() {
+            mockMvc.delete("/configs/userroles/42") {
+                with(user("admin").roles("ADMIN"))
+                accept(MediaType.TEXT_HTML)
+            }.andExpect {
+                status { is2xxSuccessful() }
+                view { name("configs/userroles") }
+            }
+
+            val captor = argumentCaptor<Long>()
+            verify(userRoleService, times(1)).deleteUserRole(captor.capture())
+
+            assertThat(captor.firstValue).isEqualTo(42)
+        }
+
+        @Test
+        fun testShouldUpdateUserRole() {
+            mockMvc.put("/configs/userroles/42") {
+                with(user("admin").roles("ADMIN"))
+                accept(MediaType.TEXT_HTML)
+                contentType = MediaType.APPLICATION_FORM_URLENCODED
+                content = "role=ADMIN"
+            }.andExpect {
+                status { is2xxSuccessful() }
+                view { name("configs/userroles") }
+            }
+
+            val idCaptor = argumentCaptor<Long>()
+            val roleCaptor = argumentCaptor<Role>()
+            verify(userRoleService, times(1)).updateUserRole(
+                idCaptor.capture(),
+                roleCaptor.capture()
+            )
+
+            assertThat(idCaptor.firstValue).isEqualTo(42)
+            assertThat(roleCaptor.firstValue).isEqualTo(Role.ADMIN)
+        }
+
+        @Test
+        @WithMockUser(username = "admin", roles = ["ADMIN"])
+        fun testShouldRenderConfigPageWithUserRoles() {
+            val page = webClient.getPage<HtmlPage>("http://localhost/configs")
+            assertThat(
+                page.getElementById("userroles")
+            ).isNotNull
+        }
+    }
+
+    @Nested
+    inner class WithUserRolesDisabled {
+        @BeforeEach
+        fun setup() {
+            webClient.options.isThrowExceptionOnScriptError = false
+        }
+
+        @Test
+        fun testShouldRenderConfigPageWithoutUserRoles() {
+            val page = webClient.getPage<HtmlPage>("http://localhost/configs")
+            assertThat(
+                page.getElementById("userroles")
+            ).isNull()
+        }
+    }
+
+    @Nested
+    inner class SseTest {
+        private lateinit var webClient: WebTestClient
+
+        @BeforeEach
+        fun setup(
+            applicationContext: WebApplicationContext
+        ) {
+            this.webClient = MockMvcWebTestClient
+                .bindToApplicationContext(applicationContext).build()
+        }
+
+        @Test
+        fun testShouldRequestGPasSSE() {
+            val expectedEvent =
+                ConnectionCheckResult.GPasConnectionCheckResult(true, Instant.now(), Instant.now())
+
+            connectionCheckUpdateProducer.tryEmitNext(expectedEvent)
+            connectionCheckUpdateProducer.emitComplete { _, _ -> true }
+
+            val result =
+                webClient.get().uri("http://localhost/configs/events").accept(TEXT_EVENT_STREAM)
+                    .exchange()
+                    .expectStatus().isOk()
+                    .expectHeader().contentType(TEXT_EVENT_STREAM)
+                    .returnResult(ConnectionCheckResult.GPasConnectionCheckResult::class.java)
+
+            StepVerifier.create(result.responseBody)
+                .expectNext(expectedEvent)
+                .expectComplete()
+                .verify()
+        }
+    }
+
 }

src/integrationTest/kotlin/dev/dnpm/etl/processor/web/HomeControllerTest.kt

@@ -0,0 +1,287 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.web
+
+import dev.dnpm.etl.processor.*
+import dev.dnpm.etl.processor.config.AppConfiguration
+import dev.dnpm.etl.processor.config.AppSecurityConfiguration
+import dev.dnpm.etl.processor.monitoring.Report
+import dev.dnpm.etl.processor.monitoring.Request
+import dev.dnpm.etl.processor.monitoring.RequestStatus
+import dev.dnpm.etl.processor.monitoring.RequestType
+import dev.dnpm.etl.processor.services.RequestService
+import org.assertj.core.api.Assertions.assertThat
+import org.htmlunit.WebClient
+import org.htmlunit.html.HtmlPage
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Nested
+import org.junit.jupiter.api.Test
+import org.junit.jupiter.api.assertThrows
+import org.junit.jupiter.api.extension.ExtendWith
+import org.mockito.junit.jupiter.MockitoExtension
+import org.mockito.kotlin.any
+import org.mockito.kotlin.whenever
+import org.springframework.beans.factory.annotation.Autowired
+import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest
+import org.springframework.data.domain.Page
+import org.springframework.data.domain.PageImpl
+import org.springframework.data.domain.Pageable
+import org.springframework.security.test.context.support.WithMockUser
+import org.springframework.test.context.ContextConfiguration
+import org.springframework.test.context.TestPropertySource
+import org.springframework.test.context.bean.override.mockito.MockitoBean
+import org.springframework.test.context.junit.jupiter.SpringExtension
+import org.springframework.test.web.servlet.MockMvc
+import org.springframework.test.web.servlet.get
+import org.springframework.test.web.servlet.htmlunit.MockMvcWebClientBuilder
+import java.io.IOException
+import java.time.Instant
+import java.util.*
+
+@WebMvcTest(controllers = [HomeController::class])
+@ExtendWith(value = [MockitoExtension::class, SpringExtension::class])
+@ContextConfiguration(
+    classes = [
+        HomeController::class,
+        AppConfiguration::class,
+        AppSecurityConfiguration::class
+    ]
+)
+@TestPropertySource(
+    properties = [
+        "app.pseudonymize.generator=BUILDIN",
+        "app.security.admin-user=admin",
+        "app.security.admin-password={noop}very-secret"
+    ]
+)
+@MockitoBean(
+    types = [RequestService::class]
+)
+class HomeControllerTest {
+
+    private lateinit var mockMvc: MockMvc
+    private lateinit var webClient: WebClient
+
+    @BeforeEach
+    fun setup(
+        @Autowired mockMvc: MockMvc,
+        @Autowired requestService: RequestService
+    ) {
+        this.mockMvc = mockMvc
+        this.webClient = MockMvcWebClientBuilder.mockMvcSetup(mockMvc).build()
+
+        whenever(requestService.findAll(any<Pageable>())).thenReturn(Page.empty())
+    }
+
+    @Test
+    fun testShouldRequestHomePage() {
+        mockMvc.get("/").andExpect {
+            status { isOk() }
+            view { name("index") }
+        }
+    }
+
+    @Nested
+    inner class WithRequests {
+
+        private lateinit var requestService: RequestService
+
+        @BeforeEach
+        fun setup(
+            @Autowired requestService: RequestService
+        ) {
+            this.requestService = requestService
+        }
+
+        @Test
+        fun testShouldShowHomePage() {
+            whenever(requestService.findAll(any<Pageable>())).thenReturn(
+                PageImpl(
+                    listOf(
+                        Request(
+                            2L,
+                            randomRequestId(),
+                            PatientPseudonym("PSEUDO1"),
+                            PatientId("PATIENT1"),
+                            Fingerprint("ashdkasdh"),
+                            RequestType.MTB_FILE,
+                            RequestStatus.SUCCESS
+                        ),
+                        Request(
+                            1L,
+                            randomRequestId(),
+                            PatientPseudonym("PSEUDO1"),
+                            PatientId("PATIENT1"),
+                            Fingerprint("asdasdasd"),
+                            RequestType.MTB_FILE,
+                            RequestStatus.ERROR
+                        )
+                    )
+                )
+            )
+
+            val page = webClient.getPage<HtmlPage>("http://localhost/")
+            assertThat(page.querySelectorAll("tbody tr")).hasSize(2)
+            assertThat(page.querySelectorAll("div.notification.info")).isEmpty()
+        }
+
+        @Test
+        @WithMockUser(username = "admin", roles = ["ADMIN"])
+        fun testShouldShowRequestDetails() {
+            val requestId = randomRequestId()
+
+            whenever(requestService.findByUuid(anyValueClass())).thenReturn(
+                Optional.of(
+                    Request(
+                        2L,
+                        requestId,
+                        PatientPseudonym("PSEUDO1"),
+                        PatientId("PATIENT1"),
+                        Fingerprint("ashdkasdh"),
+                        RequestType.MTB_FILE,
+                        RequestStatus.SUCCESS,
+                        Instant.now(),
+                        Report("Test")
+                    )
+                )
+            )
+
+            val page = webClient.getPage<HtmlPage>("http://localhost/report/${requestId.value}")
+            assertThat(page.querySelectorAll("tbody tr")).hasSize(1)
+            assertThat(page.querySelectorAll("div.notification.info")).isEmpty()
+        }
+
+        @Test
+        @WithMockUser(username = "admin", roles = ["ADMIN"])
+        fun testShouldShowPatientDetails() {
+            whenever(requestService.findRequestByPatientId(anyValueClass(), any<Pageable>())).thenReturn(
+                PageImpl(
+                    listOf(
+                        Request(
+                            2L,
+                            randomRequestId(),
+                            PatientPseudonym("PSEUDO1"),
+                            PatientId("PATIENT1"),
+                            Fingerprint("ashdkasdh"),
+                            RequestType.MTB_FILE,
+                            RequestStatus.SUCCESS
+                        ),
+                        Request(
+                            1L,
+                            randomRequestId(),
+                            PatientPseudonym("PSEUDO1"),
+                            PatientId("PATIENT1"),
+                            Fingerprint("asdasdasd"),
+                            RequestType.MTB_FILE,
+                            RequestStatus.ERROR
+                        )
+                    )
+                )
+            )
+
+            val page = webClient.getPage<HtmlPage>("http://localhost/patient/PSEUDO1")
+            assertThat(page.querySelectorAll("tbody tr")).hasSize(2)
+            assertThat(page.querySelectorAll("div.notification.info")).isEmpty()
+        }
+
+        @Test
+        @WithMockUser(username = "admin", roles = ["ADMIN"])
+        fun testShouldShowPatientPseudonym() {
+            whenever(requestService.findRequestByPatientId(anyValueClass(), any<Pageable>())).thenReturn(
+                PageImpl(
+                    listOf(
+                        Request(
+                            2L,
+                            randomRequestId(),
+                            PatientPseudonym("PSEUDO1"),
+                            PatientId("PATIENT1"),
+                            Fingerprint("ashdkasdh"),
+                            RequestType.MTB_FILE,
+                            RequestStatus.SUCCESS
+                        ),
+                        Request(
+                            1L,
+                            randomRequestId(),
+                            PatientPseudonym("PSEUDO1"),
+                            PatientId("PATIENT1"),
+                            Fingerprint("asdasdasd"),
+                            RequestType.MTB_FILE,
+                            RequestStatus.ERROR
+                        )
+                    )
+                )
+            )
+
+            val page = webClient.getPage<HtmlPage>("http://localhost/patient/PSEUDO1")
+            assertThat(page.querySelectorAll("h2 > span")).hasSize(1)
+            assertThat(page.querySelectorAll("h2 > span").first().textContent).isEqualTo("PSEUDO1")
+        }
+
+    }
+
+    @Nested
+    inner class WithoutRequests {
+
+        private lateinit var requestService: RequestService
+
+        @BeforeEach
+        fun setup(
+            @Autowired requestService: RequestService
+        ) {
+            this.requestService = requestService
+
+            whenever(requestService.findAll(any<Pageable>())).thenReturn(Page.empty())
+        }
+
+        @Test
+        fun testShouldShowHomePage() {
+            val page = webClient.getPage<HtmlPage>("http://localhost/")
+            assertThat(page.querySelectorAll("tbody tr")).isEmpty()
+            assertThat(page.querySelectorAll("div.notification.info")).hasSize(1)
+        }
+
+        @Test
+        @WithMockUser(username = "admin", roles = ["ADMIN"])
+        fun testShouldThrowNotFoundExceptionForUnknownReport() {
+            val requestId = randomRequestId()
+
+            whenever(requestService.findByUuid(anyValueClass())).thenReturn(
+                Optional.empty()
+            )
+
+            assertThrows<IOException> {
+                webClient.getPage<HtmlPage>("http://localhost/report/${requestId.value}")
+            }.also {
+                assertThat(it).hasRootCauseInstanceOf(NotFoundException::class.java)
+            }
+        }
+
+        @Test
+        @WithMockUser(username = "admin", roles = ["ADMIN"])
+        fun testShouldShowEmptyPatientDetails() {
+            whenever(requestService.findRequestByPatientId(anyValueClass(), any<Pageable>())).thenReturn(Page.empty())
+
+            val page = webClient.getPage<HtmlPage>("http://localhost/patient/PSEUDO1")
+            assertThat(page.querySelectorAll("tbody tr")).isEmpty()
+            assertThat(page.querySelectorAll("div.notification.info")).hasSize(1)
+        }
+    }
+
+}

src/integrationTest/kotlin/dev/dnpm/etl/processor/web/LoginControllerTest.kt

@@ -0,0 +1,88 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.web
+
+import dev.dnpm.etl.processor.config.AppConfiguration
+import dev.dnpm.etl.processor.config.AppSecurityConfiguration
+import dev.dnpm.etl.processor.security.TokenService
+import org.assertj.core.api.Assertions.assertThat
+import org.htmlunit.WebClient
+import org.htmlunit.html.HtmlPage
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Test
+import org.junit.jupiter.api.extension.ExtendWith
+import org.mockito.junit.jupiter.MockitoExtension
+import org.springframework.beans.factory.annotation.Autowired
+import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest
+import org.springframework.test.context.ContextConfiguration
+import org.springframework.test.context.TestPropertySource
+import org.springframework.test.context.bean.override.mockito.MockitoBean
+import org.springframework.test.context.junit.jupiter.SpringExtension
+import org.springframework.test.web.servlet.MockMvc
+import org.springframework.test.web.servlet.get
+import org.springframework.test.web.servlet.htmlunit.MockMvcWebClientBuilder
+
+@WebMvcTest(controllers = [LoginController::class])
+@ExtendWith(value = [MockitoExtension::class, SpringExtension::class])
+@ContextConfiguration(
+    classes = [
+        LoginController::class,
+        AppConfiguration::class,
+        AppSecurityConfiguration::class
+    ]
+)
+@TestPropertySource(
+    properties = [
+        "app.pseudonymize.generator=BUILDIN",
+        "app.security.admin-user=admin",
+        "app.security.admin-password={noop}very-secret",
+        "app.security.enable-tokens=true"
+    ]
+)
+@MockitoBean(
+    types = [TokenService::class]
+)
+class LoginControllerTest {
+
+    private lateinit var mockMvc: MockMvc
+    private lateinit var webClient: WebClient
+
+    @BeforeEach
+    fun setup(@Autowired mockMvc: MockMvc) {
+        this.mockMvc = mockMvc
+        this.webClient = MockMvcWebClientBuilder.mockMvcSetup(mockMvc).build()
+    }
+
+    @Test
+    fun testShouldRequestLoginPage() {
+        mockMvc.get("/login").andExpect {
+            status { isOk() }
+            view { name("login") }
+        }
+    }
+
+    @Test
+    fun testShouldShowLoginForm() {
+        val page = webClient.getPage<HtmlPage>("http://localhost/login")
+        assertThat(
+            page.getElementsByTagName("main").first().firstElementChild.getAttribute("class")
+        ).isEqualTo("login-form")
+    }
+}

src/integrationTest/kotlin/dev/dnpm/etl/processor/web/StatisticsControllerTest.kt

@@ -0,0 +1,73 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.web
+
+import dev.dnpm.etl.processor.config.AppConfiguration
+import dev.dnpm.etl.processor.config.AppSecurityConfiguration
+import org.htmlunit.WebClient
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Test
+import org.junit.jupiter.api.extension.ExtendWith
+import org.mockito.junit.jupiter.MockitoExtension
+import org.springframework.beans.factory.annotation.Autowired
+import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest
+import org.springframework.test.context.ContextConfiguration
+import org.springframework.test.context.TestPropertySource
+import org.springframework.test.context.junit.jupiter.SpringExtension
+import org.springframework.test.web.servlet.MockMvc
+import org.springframework.test.web.servlet.get
+import org.springframework.test.web.servlet.htmlunit.MockMvcWebClientBuilder
+
+@WebMvcTest(controllers = [StatisticsController::class])
+@ExtendWith(value = [MockitoExtension::class, SpringExtension::class])
+@ContextConfiguration(
+    classes = [
+        StatisticsController::class,
+        AppConfiguration::class,
+        AppSecurityConfiguration::class
+    ]
+)
+@TestPropertySource(
+    properties = [
+        "app.pseudonymize.generator=BUILDIN",
+        "app.security.admin-user=admin",
+        "app.security.admin-password={noop}very-secret"
+    ]
+)
+class StatisticsControllerTest {
+
+    private lateinit var mockMvc: MockMvc
+    private lateinit var webClient: WebClient
+
+    @BeforeEach
+    fun setup(@Autowired mockMvc: MockMvc) {
+        this.mockMvc = mockMvc
+        this.webClient = MockMvcWebClientBuilder.mockMvcSetup(mockMvc).build()
+    }
+
+    @Test
+    fun testShouldRequestLoginPage() {
+        mockMvc.get("/statistics").andExpect {
+            status { isOk() }
+            view { name("statistics") }
+        }
+    }
+
+}

src/integrationTest/kotlin/dev/dnpm/etl/processor/web/StatisticsRestControllerTest.kt

@@ -0,0 +1,314 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.web
+
+import dev.dnpm.etl.processor.Fingerprint
+import dev.dnpm.etl.processor.PatientId
+import dev.dnpm.etl.processor.PatientPseudonym
+import dev.dnpm.etl.processor.config.AppConfiguration
+import dev.dnpm.etl.processor.config.AppSecurityConfiguration
+import dev.dnpm.etl.processor.monitoring.CountedState
+import dev.dnpm.etl.processor.monitoring.Request
+import dev.dnpm.etl.processor.monitoring.RequestStatus
+import dev.dnpm.etl.processor.monitoring.RequestType
+import dev.dnpm.etl.processor.randomRequestId
+import dev.dnpm.etl.processor.services.RequestService
+import org.hamcrest.Matchers.equalTo
+import org.hamcrest.Matchers.hasSize
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Nested
+import org.junit.jupiter.api.Test
+import org.junit.jupiter.api.extension.ExtendWith
+import org.mockito.junit.jupiter.MockitoExtension
+import org.mockito.kotlin.doAnswer
+import org.mockito.kotlin.whenever
+import org.springframework.beans.factory.annotation.Autowired
+import org.springframework.boot.test.autoconfigure.web.servlet.WebMvcTest
+import org.springframework.http.MediaType.TEXT_EVENT_STREAM
+import org.springframework.test.context.ContextConfiguration
+import org.springframework.test.context.TestPropertySource
+import org.springframework.test.context.bean.override.mockito.MockitoBean
+import org.springframework.test.context.junit.jupiter.SpringExtension
+import org.springframework.test.web.reactive.server.WebTestClient
+import org.springframework.test.web.servlet.MockMvc
+import org.springframework.test.web.servlet.client.MockMvcWebTestClient
+import org.springframework.test.web.servlet.get
+import org.springframework.web.context.WebApplicationContext
+import reactor.core.publisher.Sinks
+import reactor.test.StepVerifier
+import java.time.Instant
+import java.time.ZoneId
+import java.time.temporal.ChronoUnit
+
+
+@WebMvcTest(controllers = [StatisticsRestController::class])
+@ExtendWith(value = [MockitoExtension::class, SpringExtension::class])
+@ContextConfiguration(
+    classes = [
+        StatisticsRestController::class,
+        AppConfiguration::class,
+        AppSecurityConfiguration::class
+    ]
+)
+@TestPropertySource(
+    properties = [
+        "app.pseudonymize.generator=BUILDIN",
+        "app.security.admin-user=admin",
+        "app.security.admin-password={noop}very-secret"
+    ]
+)
+@MockitoBean(
+    types = [RequestService::class]
+)
+class StatisticsRestControllerTest {
+
+    private lateinit var mockMvc: MockMvc
+
+    private lateinit var statisticsUpdateProducer: Sinks.Many<Any>
+    private lateinit var requestService: RequestService
+
+    @BeforeEach
+    fun setup(
+        @Autowired mockMvc: MockMvc,
+        @Autowired statisticsUpdateProducer: Sinks.Many<Any>,
+        @Autowired requestService: RequestService
+    ) {
+        this.mockMvc = mockMvc
+        this.statisticsUpdateProducer = statisticsUpdateProducer
+        this.requestService = requestService
+    }
+
+    @Nested
+    inner class RequestStatesTest {
+        @Test
+        fun testShouldRequestStatesForMtbFiles() {
+            doAnswer { _ ->
+                listOf(
+                    CountedState(42, RequestStatus.WARNING),
+                    CountedState(1, RequestStatus.UNKNOWN)
+                )
+            }.whenever(requestService).countStates()
+
+            mockMvc.get("/statistics/requeststates").andExpect {
+                status { isOk() }.also {
+                    jsonPath("$", hasSize<Int>(2))
+                    jsonPath("$[0].name", equalTo(RequestStatus.WARNING.name))
+                    jsonPath("$[0].value", equalTo(42))
+                    jsonPath("$[1].name", equalTo(RequestStatus.UNKNOWN.name))
+                    jsonPath("$[1].value", equalTo(1))
+                }
+            }
+        }
+
+        @Test
+        fun testShouldRequestStatesForDeletes() {
+            doAnswer { _ ->
+                listOf(
+                    CountedState(42, RequestStatus.SUCCESS),
+                    CountedState(1, RequestStatus.ERROR)
+                )
+            }.whenever(requestService).countDeleteStates()
+
+            mockMvc.get("/statistics/requeststates?delete=true").andExpect {
+                status { isOk() }.also {
+                    jsonPath("$", hasSize<Int>(2))
+                    jsonPath("$[0].name", equalTo(RequestStatus.SUCCESS.name))
+                    jsonPath("$[0].value", equalTo(42))
+                    jsonPath("$[1].name", equalTo(RequestStatus.ERROR.name))
+                    jsonPath("$[1].value", equalTo(1))
+                }
+            }
+        }
+    }
+
+    @Nested
+    inner class PatientRequestStatesTest {
+        @Test
+        fun testShouldRequestPatientStatesForMtbFiles() {
+            doAnswer { _ ->
+                listOf(
+                    CountedState(42, RequestStatus.WARNING),
+                    CountedState(1, RequestStatus.UNKNOWN)
+                )
+            }.whenever(requestService).findPatientUniqueStates()
+
+            mockMvc.get("/statistics/requestpatientstates").andExpect {
+                status { isOk() }.also {
+                    jsonPath("$", hasSize<Int>(2))
+                    jsonPath("$[0].name", equalTo(RequestStatus.WARNING.name))
+                    jsonPath("$[0].value", equalTo(42))
+                    jsonPath("$[1].name", equalTo(RequestStatus.UNKNOWN.name))
+                    jsonPath("$[1].value", equalTo(1))
+                }
+            }
+        }
+
+        @Test
+        fun testShouldRequestPatientStatesForDeletes() {
+            doAnswer { _ ->
+                listOf(
+                    CountedState(42, RequestStatus.SUCCESS),
+                    CountedState(1, RequestStatus.ERROR)
+                )
+            }.whenever(requestService).findPatientUniqueDeleteStates()
+
+            mockMvc.get("/statistics/requestpatientstates?delete=true").andExpect {
+                status { isOk() }.also {
+                    jsonPath("$", hasSize<Int>(2))
+                    jsonPath("$[0].name", equalTo(RequestStatus.SUCCESS.name))
+                    jsonPath("$[0].value", equalTo(42))
+                    jsonPath("$[1].name", equalTo(RequestStatus.ERROR.name))
+                    jsonPath("$[1].value", equalTo(1))
+                }
+            }
+        }
+    }
+
+    @Nested
+    inner class LastMonthStatesTest {
+
+        @BeforeEach
+        fun setup() {
+            val zoneId = ZoneId.of("Europe/Berlin")
+            doAnswer { _ ->
+                listOf(
+                    Request(
+                        1,
+                        randomRequestId(),
+                        PatientPseudonym("TEST_12345678901"),
+                        PatientId("P1"),
+                        Fingerprint("0123456789abcdef1"),
+                        RequestType.MTB_FILE,
+                        RequestStatus.SUCCESS,
+                        Instant.now().atZone(zoneId).truncatedTo(ChronoUnit.DAYS).minus(2, ChronoUnit.DAYS).toInstant()
+                    ),
+                    Request(
+                        2,
+                        randomRequestId(),
+                        PatientPseudonym("TEST_12345678902"),
+                        PatientId("P2"),
+                        Fingerprint("0123456789abcdef2"),
+                        RequestType.MTB_FILE,
+                        RequestStatus.WARNING,
+                        Instant.now().atZone(zoneId).truncatedTo(ChronoUnit.DAYS).minus(2, ChronoUnit.DAYS).toInstant()
+                    ),
+                    Request(
+                        3,
+                        randomRequestId(),
+                        PatientPseudonym("TEST_12345678901"),
+                        PatientId("P2"),
+                        Fingerprint("0123456789abcdee1"),
+                        RequestType.DELETE,
+                        RequestStatus.ERROR,
+                        Instant.now().atZone(zoneId).truncatedTo(ChronoUnit.DAYS).minus(1, ChronoUnit.DAYS).toInstant()
+                    ),
+                    Request(
+                        4,
+                        randomRequestId(),
+                        PatientPseudonym("TEST_12345678902"),
+                        PatientId("P2"),
+                        Fingerprint("0123456789abcdef2"),
+                        RequestType.MTB_FILE,
+                        RequestStatus.DUPLICATION,
+                        Instant.now().atZone(zoneId).truncatedTo(ChronoUnit.DAYS).minus(1, ChronoUnit.DAYS).toInstant()
+                    ),
+                    Request(
+                        5,
+                        randomRequestId(),
+                        PatientPseudonym("TEST_12345678902"),
+                        PatientId("P2"),
+                        Fingerprint("0123456789abcdef2"),
+                        RequestType.DELETE,
+                        RequestStatus.UNKNOWN,
+                        Instant.now().atZone(zoneId).truncatedTo(ChronoUnit.DAYS).toInstant()
+                    ),
+                )
+            }.whenever(requestService).findAll()
+        }
+
+        @Test
+        fun testShouldRequestLastMonthForMtbFiles() {
+            mockMvc.get("/statistics/requestslastmonth").andExpect {
+                status { isOk() }.also {
+                    jsonPath("$", hasSize<Int>(31))
+                }.also {
+                    jsonPath("$[28].nameValues.error", equalTo(0))
+                    jsonPath("$[28].nameValues.warning", equalTo(1))
+                    jsonPath("$[28].nameValues.success", equalTo(1))
+                    jsonPath("$[28].nameValues.duplication", equalTo(0))
+                    jsonPath("$[28].nameValues.unknown", equalTo(0))
+                    jsonPath("$[29].nameValues.error", equalTo(0))
+                    jsonPath("$[29].nameValues.warning", equalTo(0))
+                    jsonPath("$[29].nameValues.success", equalTo(0))
+                    jsonPath("$[29].nameValues.duplication", equalTo(1))
+                    jsonPath("$[29].nameValues.unknown", equalTo(0))
+                }
+            }
+        }
+
+        @Test
+        fun testShouldRequestLastMonthForDeletes() {
+            mockMvc.get("/statistics/requestslastmonth?delete=true").andExpect {
+                status { isOk() }.also {
+                    jsonPath("$", hasSize<Int>(31))
+                }.also {
+                    jsonPath("$[29].nameValues.error", equalTo(1))
+                    jsonPath("$[29].nameValues.warning", equalTo(0))
+                    jsonPath("$[29].nameValues.success", equalTo(0))
+                    jsonPath("$[29].nameValues.duplication", equalTo(0))
+                    jsonPath("$[29].nameValues.unknown", equalTo(0))
+                    jsonPath("$[30].nameValues.error", equalTo(0))
+                    jsonPath("$[30].nameValues.warning", equalTo(0))
+                    jsonPath("$[30].nameValues.success", equalTo(0))
+                    jsonPath("$[30].nameValues.duplication", equalTo(0))
+                    jsonPath("$[30].nameValues.unknown", equalTo(1))
+                }
+            }
+        }
+    }
+
+    @Nested
+    inner class SseTest {
+        private lateinit var webClient: WebTestClient
+
+        @BeforeEach
+        fun setup(
+            applicationContext: WebApplicationContext,
+        ) {
+            this.webClient = MockMvcWebTestClient
+                .bindToApplicationContext(applicationContext).build()
+        }
+
+        @Test
+        fun testShouldRequestSSE() {
+            statisticsUpdateProducer.emitComplete { _, _ -> true }
+
+            val result = webClient.get().uri("http://localhost/statistics/events").accept(TEXT_EVENT_STREAM).exchange()
+                .expectStatus().isOk()
+                .expectHeader().contentType(TEXT_EVENT_STREAM)
+                .returnResult(String::class.java)
+
+            StepVerifier.create(result.responseBody)
+                .expectComplete()
+                .verify()
+        }
+    }
+
+}

src/main/java/dev/dnpm/etl/processor/consent/ConsentDomain.java

@@ -0,0 +1,13 @@
+package dev.dnpm.etl.processor.consent;
+
+public enum ConsentDomain {
+    /**
+     * MII Broad consent
+     */
+    BROAD_CONSENT,
+
+    /**
+     * GenomDe Modellvorhaben §64e
+     */
+    MODELLVORHABEN_64E
+}

src/main/java/dev/dnpm/etl/processor/consent/GicsConsentService.java

@@ -0,0 +1,307 @@
+package dev.dnpm.etl.processor.consent;
+
+import ca.uhn.fhir.context.FhirContext;
+import ca.uhn.fhir.parser.DataFormatException;
+import dev.dnpm.etl.processor.config.AppFhirConfig;
+import dev.dnpm.etl.processor.config.GIcsConfigProperties;
+import org.apache.commons.lang3.StringUtils;
+import org.hl7.fhir.r4.model.*;
+import org.hl7.fhir.r4.model.Parameters.ParametersParameterComponent;
+import org.jetbrains.annotations.NotNull;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import org.springframework.http.HttpEntity;
+import org.springframework.http.HttpHeaders;
+import org.springframework.http.HttpMethod;
+import org.springframework.http.MediaType;
+import org.springframework.retry.TerminatedRetryException;
+import org.springframework.retry.support.RetryTemplate;
+import org.springframework.web.client.RestClientException;
+import org.springframework.web.client.RestTemplate;
+import org.springframework.web.util.UriComponentsBuilder;
+
+import java.net.URI;
+import java.util.Date;
+
+/**
+ * Service to request Consent from remote gICS installation
+ *
+ * @since 0.11
+ */
+public class GicsConsentService implements IConsentService {
+
+    private final Logger log = LoggerFactory.getLogger(GicsConsentService.class);
+
+    public static final String IS_CONSENTED_ENDPOINT = "/$isConsented";
+    public static final String IS_POLICY_STATES_FOR_PERSON_ENDPOINT = "/$currentPolicyStatesForPerson";
+
+    private final RetryTemplate retryTemplate;
+    private final RestTemplate restTemplate;
+    private final FhirContext fhirContext;
+    private final GIcsConfigProperties gIcsConfigProperties;
+
+    public GicsConsentService(
+        GIcsConfigProperties gIcsConfigProperties,
+        RetryTemplate retryTemplate,
+        RestTemplate restTemplate,
+        AppFhirConfig appFhirConfig
+    ) {
+        this.retryTemplate = retryTemplate;
+        this.restTemplate = restTemplate;
+        this.fhirContext = appFhirConfig.fhirContext();
+        this.gIcsConfigProperties = gIcsConfigProperties;
+        log.info("GicsConsentService initialized...");
+    }
+
+    protected Parameters getFhirRequestParameters(
+        String personIdentifierValue
+    ) {
+        var result = new Parameters();
+        result.addParameter(
+            new ParametersParameterComponent()
+                .setName("personIdentifier")
+                .setValue(
+                    new Identifier()
+                        .setValue(personIdentifierValue)
+                        .setSystem(this.gIcsConfigProperties.getPersonIdentifierSystem())
+                )
+        );
+        result.addParameter(
+            new ParametersParameterComponent()
+                .setName("domain")
+                .setValue(
+                    new StringType()
+                        .setValue(this.gIcsConfigProperties.getBroadConsentDomainName())
+                )
+        );
+        result.addParameter(
+            new ParametersParameterComponent()
+                .setName("policy")
+                .setValue(
+                    new Coding()
+                        .setCode(this.gIcsConfigProperties.getBroadConsentPolicyCode())
+                        .setSystem(this.gIcsConfigProperties.getBroadConsentPolicySystem())
+                )
+        );
+
+        /*
+         * is mandatory parameter, but we ignore it via additional configuration parameter
+         * 'ignoreVersionNumber'.
+         */
+        result.addParameter(
+            new ParametersParameterComponent()
+                .setName("version")
+                .setValue(new StringType().setValue("1.1")
+                )
+        );
+
+        /* add config parameter with:
+         * ignoreVersionNumber -> true ->> Reason is we cannot know which policy version each patient
+         * has possibly signed or not, therefore we are happy with any version found.
+         * unknownStateIsConsideredAsDecline -> true
+         */
+        var config = new ParametersParameterComponent()
+            .setName("config")
+            .addPart(
+                new ParametersParameterComponent()
+                    .setName("ignoreVersionNumber")
+                    .setValue(new BooleanType().setValue(true))
+            )
+            .addPart(
+                new ParametersParameterComponent()
+                    .setName("unknownStateIsConsideredAsDecline")
+                    .setValue(new BooleanType().setValue(false))
+            );
+
+        result.addParameter(config);
+
+        return result;
+    }
+
+    private URI endpointUri(String endpoint) {
+        assert this.gIcsConfigProperties.getUri() != null;
+        return UriComponentsBuilder.fromUriString(this.gIcsConfigProperties.getUri()).path(endpoint).build().toUri();
+    }
+
+    private HttpHeaders headersWithHttpBasicAuth() {
+        assert this.gIcsConfigProperties.getUri() != null;
+
+        var headers = new HttpHeaders();
+        headers.setContentType(MediaType.APPLICATION_XML);
+
+        if (
+            StringUtils.isBlank(this.gIcsConfigProperties.getUsername())
+                || StringUtils.isBlank(this.gIcsConfigProperties.getPassword())
+        ) {
+            return headers;
+        }
+
+        headers.setBasicAuth(this.gIcsConfigProperties.getUsername(), this.gIcsConfigProperties.getPassword());
+        return headers;
+    }
+
+    protected String callGicsApi(Parameters parameter, String endpoint) {
+        var parameterAsXml = fhirContext.newXmlParser().encodeResourceToString(parameter);
+        HttpEntity<String> requestEntity = new HttpEntity<>(parameterAsXml, this.headersWithHttpBasicAuth());
+        try {
+            var responseEntity = retryTemplate.execute(
+                ctx -> restTemplate.exchange(endpointUri(endpoint), HttpMethod.POST, requestEntity, String.class)
+            );
+
+            if (responseEntity.getStatusCode().is2xxSuccessful()) {
+                return responseEntity.getBody();
+            } else {
+                var msg = String.format(
+                    "Trusted party system reached but request failed! code: '%s' response: '%s'",
+                    responseEntity.getStatusCode(), responseEntity.getBody());
+                log.error(msg);
+                return null;
+            }
+        } catch (RestClientException e) {
+            var msg = String.format("Get consents status request failed reason: '%s",
+                                    e.getMessage());
+            log.error(msg);
+            return null;
+
+        } catch (TerminatedRetryException terminatedRetryException) {
+            var msg = String.format(
+                "Get consents status process has been terminated. termination reason: '%s",
+                terminatedRetryException.getMessage());
+            log.error(msg);
+            return null;
+        }
+    }
+
+    @Override
+    public TtpConsentStatus getTtpBroadConsentStatus(String personIdentifierValue) {
+        var consentStatusResponse = callGicsApi(
+            getFhirRequestParameters(personIdentifierValue),
+            GicsConsentService.IS_CONSENTED_ENDPOINT
+        );
+        return evaluateConsentResponse(consentStatusResponse);
+    }
+
+    protected Bundle currentConsentForPersonAndTemplate(
+        String personIdentifierValue,
+        ConsentDomain consentDomain,
+        Date requestDate
+    ) {
+
+        var requestParameter = buildRequestParameterCurrentPolicyStatesForPerson(
+            personIdentifierValue,
+            requestDate,
+            consentDomain
+        );
+
+        var consentDataSerialized = callGicsApi(requestParameter,
+                                                GicsConsentService.IS_POLICY_STATES_FOR_PERSON_ENDPOINT);
+
+        if (consentDataSerialized == null) {
+            // error occurred - should not process further!
+            throw new IllegalStateException(
+                "consent data request failed - stopping processing! - try again or fix other problems first.");
+        }
+        var iBaseResource = fhirContext.newJsonParser()
+                                       .parseResource(consentDataSerialized);
+        if (iBaseResource instanceof OperationOutcome) {
+            // log error  - very likely a configuration error
+            String errorMessage =
+                "Consent request failed! Check outcome:\n " + consentDataSerialized;
+            log.error(errorMessage);
+            throw new IllegalStateException(errorMessage);
+        } else if (iBaseResource instanceof Bundle bundle) {
+            return bundle;
+        } else {
+            String errorMessage = "Consent request failed! Unexpected response received! ->  "
+                + consentDataSerialized;
+            log.error(errorMessage);
+            throw new IllegalStateException(errorMessage);
+        }
+    }
+
+    @NotNull
+    private String getConsentDomainName(ConsentDomain targetConsentDomain) {
+        return switch (targetConsentDomain) {
+            case BROAD_CONSENT -> gIcsConfigProperties.getBroadConsentDomainName();
+            case MODELLVORHABEN_64E -> gIcsConfigProperties.getGenomDeConsentDomainName();
+        };
+    }
+
+    protected Parameters buildRequestParameterCurrentPolicyStatesForPerson(
+        String personIdentifierValue,
+        Date requestDate,
+        ConsentDomain consentDomain
+    ) {
+        var requestParameter = new Parameters();
+        requestParameter.addParameter(
+            new ParametersParameterComponent()
+                .setName("personIdentifier")
+                .setValue(
+                    new Identifier()
+                        .setValue(personIdentifierValue)
+                        .setSystem(this.gIcsConfigProperties.getPersonIdentifierSystem())
+                )
+        );
+
+        requestParameter.addParameter(
+            new ParametersParameterComponent()
+                .setName("domain")
+                .setValue(new StringType().setValue(getConsentDomainName(consentDomain)))
+        );
+
+        Parameters nestedConfigParameters = new Parameters();
+        nestedConfigParameters
+            .addParameter(
+                new ParametersParameterComponent()
+                    .setName("idMatchingType")
+                    .setValue(new Coding()
+                                  .setSystem("https://ths-greifswald.de/fhir/CodeSystem/gics/IdMatchingType")
+                                  .setCode("AT_LEAST_ONE")
+                    )
+            )
+            .addParameter("ignoreVersionNumber", false)
+            .addParameter("unknownStateIsConsideredAsDecline", false)
+            .addParameter("requestDate", new DateType().setValue(requestDate));
+
+        requestParameter.addParameter(
+            new ParametersParameterComponent().setName("config").addPart().setResource(nestedConfigParameters)
+        );
+
+        return requestParameter;
+    }
+
+    private TtpConsentStatus evaluateConsentResponse(String consentStatusResponse) {
+        if (consentStatusResponse == null) {
+            return TtpConsentStatus.FAILED_TO_ASK;
+        }
+        try {
+            var response = fhirContext.newJsonParser().parseResource(consentStatusResponse);
+
+            if (response instanceof Parameters responseParameters) {
+
+                var responseValue = responseParameters.getParameter("consented").getValue();
+                var isConsented = responseValue.castToBoolean(responseValue);
+                if (!isConsented.hasValue()) {
+                    return TtpConsentStatus.FAILED_TO_ASK;
+                }
+                if (isConsented.booleanValue()) {
+                    return TtpConsentStatus.BROAD_CONSENT_GIVEN;
+                } else {
+                    return TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED;
+                }
+            } else if (response instanceof OperationOutcome outcome) {
+                log.error("failed to get consent status from ttp. probably configuration error. "
+                              + "outcome: '{}'", fhirContext.newJsonParser().encodeToString(outcome));
+
+            }
+        } catch (DataFormatException dfe) {
+            log.error("failed to parse response to FHIR R4 resource.", dfe);
+        }
+        return TtpConsentStatus.FAILED_TO_ASK;
+    }
+
+    @Override
+    public Bundle getConsent(String patientId, Date requestDate, ConsentDomain consentDomain) {
+        return currentConsentForPersonAndTemplate(patientId, consentDomain, requestDate);
+    }
+}

src/main/java/dev/dnpm/etl/processor/consent/IConsentService.java

@@ -0,0 +1,27 @@
+package dev.dnpm.etl.processor.consent;
+
+import java.util.Date;
+import org.hl7.fhir.r4.model.Bundle;
+
+public interface IConsentService {
+
+    /**
+     * Get broad consent status for a patient identifier
+     *
+     * @param personIdentifierValue patient identifier used for consent data
+     * @return status of broad consent
+     * @apiNote cannot not differ between not asked and rejected
+     *
+     */
+    TtpConsentStatus getTtpBroadConsentStatus(String personIdentifierValue);
+
+    /**
+     * Get broad consent policies with respect to a request date
+     *
+     * @param personIdentifierValue patient identifier used for consent data
+     * @param requestDate           target date until consent data should be considered
+     * @return consent policies as bundle; <p>if empty patient has not been asked, yet.</p>
+     */
+    Bundle getConsent(String personIdentifierValue, Date requestDate, ConsentDomain consentDomain);
+
+}

src/main/java/dev/dnpm/etl/processor/consent/MtbFileConsentService.java

@@ -0,0 +1,31 @@
+package dev.dnpm.etl.processor.consent;
+
+import java.util.Date;
+import org.hl7.fhir.r4.model.Bundle;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+public class MtbFileConsentService implements IConsentService {
+
+    private static final Logger log = LoggerFactory.getLogger(MtbFileConsentService.class);
+
+    public MtbFileConsentService() {
+        log.info("ConsentCheckFileBased initialized...");
+    }
+
+    @Override
+    public TtpConsentStatus getTtpBroadConsentStatus(String personIdentifierValue) {
+        return TtpConsentStatus.UNKNOWN_CHECK_FILE;
+    }
+
+    /**
+     * EMPTY METHOD: NOT IMPLEMENTED
+     *
+     * @return empty bundle
+     */
+    @Override
+    public Bundle getConsent(String personIdentifierValue, Date requestDate,
+        ConsentDomain consentDomain) {
+        return new Bundle();
+    }
+}

src/main/java/dev/dnpm/etl/processor/consent/TtpConsentStatus.java

@@ -0,0 +1,38 @@
+package dev.dnpm.etl.processor.consent;
+
+public enum TtpConsentStatus {
+    /**
+     * Valid consent found
+     */
+    BROAD_CONSENT_GIVEN,
+    /**
+     * Missing or rejected...actually unknown
+     */
+    BROAD_CONSENT_MISSING_OR_REJECTED,
+    /**
+     * No Broad consent policy found
+     */
+    BROAD_CONSENT_MISSING,
+    /**
+     * Research policy has been rejected
+     */
+    BROAD_CONSENT_REJECTED,
+
+    GENOM_DE_CONSENT_SEQUENCING_PERMIT,
+    /**
+     * No GenomDE consent policy found
+     */
+    GENOM_DE_CONSENT_MISSING,
+    /**
+     * GenomDE consent policy found, but has been rejected
+     */
+    GENOM_DE_SEQUENCING_REJECTED,
+    /**
+     * Consent status is validate via file property 'consent.status'
+     */
+    UNKNOWN_CHECK_FILE,
+    /**
+     * Due technical problems consent status is unknown
+     */
+    FAILED_TO_ASK
+}

src/main/java/dev/dnpm/etl/processor/pseudonym/Generator.java

@@ -23,4 +23,6 @@ public interface Generator {
 
     String generate(String id);
 
+    String generateGenomDeTan(String id);
+
 }

src/main/java/dev/dnpm/etl/processor/pseudonym/GpasPseudonymGenerator.java

@@ -21,91 +21,92 @@ package dev.dnpm.etl.processor.pseudonym;
 
 import ca.uhn.fhir.context.FhirContext;
 import ca.uhn.fhir.parser.IParser;
+import dev.dnpm.etl.processor.config.AppFhirConfig;
 import dev.dnpm.etl.processor.config.GPasConfigProperties;
+import java.net.URI;
+import java.net.URISyntaxException;
+import org.apache.commons.lang3.NotImplementedException;
 import org.apache.commons.lang3.StringUtils;
-import org.apache.hc.client5.http.impl.classic.CloseableHttpClient;
-import org.apache.hc.client5.http.impl.classic.HttpClients;
-import org.apache.hc.client5.http.impl.io.BasicHttpClientConnectionManager;
-import org.apache.hc.client5.http.socket.ConnectionSocketFactory;
-import org.apache.hc.client5.http.socket.PlainConnectionSocketFactory;
-import org.apache.hc.client5.http.ssl.SSLConnectionSocketFactory;
-import org.apache.hc.core5.http.config.Registry;
-import org.apache.hc.core5.http.config.RegistryBuilder;
+import org.apache.hc.core5.net.URIBuilder;
 import org.hl7.fhir.r4.model.Identifier;
 import org.hl7.fhir.r4.model.Parameters;
 import org.hl7.fhir.r4.model.Parameters.ParametersParameterComponent;
 import org.hl7.fhir.r4.model.StringType;
 import org.jetbrains.annotations.NotNull;
-import org.jetbrains.annotations.Nullable;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.springframework.http.*;
-import org.springframework.http.client.HttpComponentsClientHttpRequestFactory;
 import org.springframework.retry.support.RetryTemplate;
+import org.springframework.web.client.HttpClientErrorException.BadRequest;
+import org.springframework.web.client.HttpClientErrorException.Unauthorized;
+import org.springframework.web.client.RestClientException;
 import org.springframework.web.client.RestTemplate;
 
-import javax.net.ssl.SSLContext;
-import javax.net.ssl.TrustManagerFactory;
-import java.io.BufferedInputStream;
-import java.io.FileInputStream;
-import java.io.IOException;
-import java.security.KeyManagementException;
-import java.security.KeyStore;
-import java.security.KeyStoreException;
-import java.security.NoSuchAlgorithmException;
-import java.security.cert.CertificateException;
-import java.security.cert.CertificateFactory;
-import java.security.cert.X509Certificate;
-import java.util.Base64;
-
 public class GpasPseudonymGenerator implements Generator {
 
-    private final static FhirContext r4Context = FhirContext.forR4();
+    private final FhirContext r4Context;
     private final String gPasUrl;
-    private final String psnTargetDomain;
     private final HttpHeaders httpHeader;
     private final RetryTemplate retryTemplate;
     private final Logger log = LoggerFactory.getLogger(GpasPseudonymGenerator.class);
-
     private final RestTemplate restTemplate;
+    private final @NotNull String genomDeTanDomain;
+    private final @NotNull String pidPsnDomain;
+    protected final static String createOrGetPsn = "$pseudonymizeAllowCreate";
+    protected final static String createMultiDomainPsn = "$pseudonymize-secondary";
+    private final static String SINGLE_PSN_PART_NAME = "pseudonym";
+    private final static String MULTI_PSN_PART_NAME = "value";
 
-    private SSLContext customSslContext;
-
-    public GpasPseudonymGenerator(GPasConfigProperties gpasCfg, RetryTemplate retryTemplate) {
+    public GpasPseudonymGenerator(GPasConfigProperties gpasCfg, RetryTemplate retryTemplate,
+        RestTemplate restTemplate, AppFhirConfig appFhirConfig) {
         this.retryTemplate = retryTemplate;
-        this.restTemplate = getRestTemplete();
-
+        this.restTemplate = restTemplate;
         this.gPasUrl = gpasCfg.getUri();
-        this.psnTargetDomain = gpasCfg.getTarget();
+        this.pidPsnDomain = gpasCfg.getPatientDomain();
+        this.genomDeTanDomain = gpasCfg.getGenomDeTanDomain();
+        this.r4Context = appFhirConfig.fhirContext();
         httpHeader = getHttpHeaders(gpasCfg.getUsername(), gpasCfg.getPassword());
 
-        try {
-            if (StringUtils.isNotBlank(gpasCfg.getSslCaLocation())) {
-                customSslContext = getSslContext(gpasCfg.getSslCaLocation());
-                log.warn(String.format("%s has been initialized with SSL certificate %s. This is deprecated in favor of including Root CA.",
-                    this.getClass().getName(), gpasCfg.getSslCaLocation()));
-            }
-        } catch (IOException | KeyManagementException | KeyStoreException | CertificateException |
-                 NoSuchAlgorithmException e) {
-            throw new RuntimeException(e);
-        }
-
-        log.debug(String.format("%s has been initialized", this.getClass().getName()));
+        log.debug("{} has been initialized", this.getClass().getName());
 
     }
 
     @Override
     public String generate(String id) {
-        var gPasRequestBody = getGpasRequestBody(id);
-        var responseEntity = getGpasPseudonym(gPasRequestBody);
-        var gPasPseudonymResult = (Parameters) r4Context.newJsonParser()
+        return generate(id, PsnDomainType.SINGLE_PSN_DOMAIN);
+    }
+
+    @Override
+    public String generateGenomDeTan(String id) {
+        return generate(id, PsnDomainType.MULTI_PSN_DOMAIN);
+    }
+
+    protected String generate(String id, PsnDomainType domainType) {
+        switch (domainType) {
+            case SINGLE_PSN_DOMAIN -> {
+                final var requestBody = createSinglePsnRequestBody(id, pidPsnDomain);
+                final var responseEntity = getGpasPseudonym(requestBody, createOrGetPsn);
+                final var gPasPseudonymResult = (Parameters) r4Context.newJsonParser()
                     .parseResource(responseEntity.getBody());
 
-        return unwrapPseudonym(gPasPseudonymResult);
+                return unwrapPseudonym(gPasPseudonymResult, SINGLE_PSN_PART_NAME);
+            }
+            case MULTI_PSN_DOMAIN -> {
+                final var requestBody = createMultiPsnRequestBody(id, genomDeTanDomain);
+                final var responseEntity = getGpasPseudonym(requestBody, createMultiDomainPsn);
+                final var gPasPseudonymResult = (Parameters) r4Context.newJsonParser()
+                    .parseResource(responseEntity.getBody());
+
+                return unwrapPseudonym(gPasPseudonymResult, MULTI_PSN_PART_NAME);
+            }
+        }
+        throw new NotImplementedException(
+            "give domain type '%s' is unexpected and is currently not supported!".formatted(
+                domainType));
     }
 
     @NotNull
-    public static String unwrapPseudonym(Parameters gPasPseudonymResult) {
+    public static String unwrapPseudonym(Parameters gPasPseudonymResult, String targetPartName) {
         final var parameters = gPasPseudonymResult.getParameter().stream().findFirst();
 
         if (parameters.isEmpty()) {
@@ -113,7 +114,7 @@ public class GpasPseudonymGenerator implements Generator {
         }
 
         final var identifier = (Identifier) parameters.get().getPart().stream()
-            .filter(a -> a.getName().equals("pseudonym"))
+            .filter(a -> a.getName().equals(targetPartName))
             .findFirst()
             .orElseGet(ParametersParameterComponent::new).getValue();
 
@@ -135,42 +136,80 @@ public class GpasPseudonymGenerator implements Generator {
         return psnValue.replaceAll(forbiddenCharsRegex, "_");
     }
 
-
     @NotNull
-    protected ResponseEntity<String> getGpasPseudonym(String gPasRequestBody) {
+    protected ResponseEntity<String> getGpasPseudonym(String gPasRequestBody, String apiEndpoint) {
 
         HttpEntity<String> requestEntity = new HttpEntity<>(gPasRequestBody, this.httpHeader);
-        ResponseEntity<String> responseEntity;
 
         try {
-            responseEntity = retryTemplate.execute(
-                ctx -> restTemplate.exchange(gPasUrl, HttpMethod.POST, requestEntity,
+            var targetUrl = buildRequestUrl(apiEndpoint);
+            ResponseEntity<String> responseEntity = retryTemplate.execute(
+                ctx -> restTemplate.exchange(targetUrl, HttpMethod.POST, requestEntity,
                     String.class));
-
             if (responseEntity.getStatusCode().is2xxSuccessful()) {
                 log.debug("API request succeeded. Response: {}", responseEntity.getStatusCode());
-            } else {
-                log.warn("API request unsuccessful. Response: {}", requestEntity.getBody());
-                throw new PseudonymRequestFailed("API request unsuccessful gPas unsuccessful.");
-            }
-
                 return responseEntity;
+            }
+        } catch (RestClientException rce) {
+            if (rce instanceof BadRequest) {
+                String msg = "gPas or request configuration is incorrect. Please check both."
+                    + rce.getMessage();
+                log.debug(
+                    msg);
+                throw new PseudonymRequestFailed(msg, rce);
+            }
+            if (rce instanceof Unauthorized) {
+                var msg = "gPas access credentials are invalid  check your configuration. msg:  '%s".formatted(
+                    rce.getMessage());
+                log.error(msg);
+                throw new PseudonymRequestFailed(msg, rce);
+            }
         } catch (Exception unexpected) {
             throw new PseudonymRequestFailed(
                 "API request due unexpected error unsuccessful gPas unsuccessful.", unexpected);
         }
+        throw new PseudonymRequestFailed(
+            "API request due unexpected error unsuccessful gPas unsuccessful.");
+
     }
 
-    protected String getGpasRequestBody(String id) {
-        var requestParameters = new Parameters();
+    protected URI buildRequestUrl(String apiEndpoint) throws URISyntaxException {
+        var gPasUrl1 = gPasUrl;
+        if (gPasUrl.lastIndexOf("/") == gPasUrl.length() - 1) {
+            gPasUrl1 = gPasUrl.substring(0, gPasUrl.length() - 1);
+        }
+        var urlBuilder = new URIBuilder(new URI(gPasUrl1)).appendPath(apiEndpoint);
+
+        return urlBuilder.build();
+    }
+
+    protected String createSinglePsnRequestBody(String id, String targetDomain) {
+        final var requestParameters = new Parameters();
         requestParameters.addParameter().setName("target")
-            .setValue(new StringType().setValue(psnTargetDomain));
+            .setValue(new StringType().setValue(targetDomain));
         requestParameters.addParameter().setName("original")
             .setValue(new StringType().setValue(id));
         final IParser iParser = r4Context.newJsonParser();
         return iParser.encodeResourceToString(requestParameters);
     }
 
+    protected String createMultiPsnRequestBody(String id, String targetDomain) {
+        final var param = new Parameters();
+        ParametersParameterComponent targetParam = param.addParameter().setName("original");
+        targetParam.addPart(
+            new ParametersParameterComponent().setName("target")
+                .setValue(new StringType(targetDomain)));
+        targetParam.addPart(
+            new ParametersParameterComponent().setName("value").setValue(new StringType(id)));
+        targetParam
+            .addPart(new ParametersParameterComponent().setName("count").setValue(
+                new StringType("1")));
+
+        final IParser iParser = r4Context.newJsonParser();
+        return iParser.encodeResourceToString(param);
+    }
+
+
     @NotNull
     protected HttpHeaders getHttpHeaders(String gPasUserName, String gPasPassword) {
         var headers = new HttpHeaders();
@@ -180,67 +219,7 @@ public class GpasPseudonymGenerator implements Generator {
             return headers;
         }
 
-        String authHeader = gPasUserName + ":" + gPasPassword;
-        byte[] authHeaderBytes = authHeader.getBytes();
-        byte[] encodedAuthHeaderBytes = Base64.getEncoder().encode(authHeaderBytes);
-        String encodedAuthHeader = new String(encodedAuthHeaderBytes);
-
-        if (StringUtils.isNotBlank(gPasUserName) && StringUtils.isNotBlank(gPasPassword)) {
-            headers.set("Authorization", "Basic " + encodedAuthHeader);
-        }
-
+        headers.setBasicAuth(gPasUserName, gPasPassword);
         return headers;
     }
-
-    /**
-     * Read SSL root certificate and return SSLContext
-     *
-     * @param certificateLocation file location to root certificate (PEM)
-     * @return initialized SSLContext
-     * @throws IOException              file cannot be read
-     * @throws CertificateException     in case we have an invalid certificate of type X.509
-     * @throws KeyStoreException        keystore cannot be initialized
-     * @throws NoSuchAlgorithmException missing trust manager algorithmus
-     * @throws KeyManagementException   key management failed at init SSLContext
-     */
-    @Nullable
-    protected SSLContext getSslContext(String certificateLocation)
-        throws IOException, CertificateException, KeyStoreException, KeyManagementException, NoSuchAlgorithmException {
-
-        KeyStore ks = KeyStore.getInstance(KeyStore.getDefaultType());
-
-        FileInputStream fis = new FileInputStream(certificateLocation);
-        X509Certificate ca = (X509Certificate) CertificateFactory.getInstance("X.509")
-            .generateCertificate(new BufferedInputStream(fis));
-
-        ks.load(null, null);
-        ks.setCertificateEntry(Integer.toString(1), ca);
-
-        TrustManagerFactory tmf = TrustManagerFactory.getInstance(
-            TrustManagerFactory.getDefaultAlgorithm());
-        tmf.init(ks);
-
-        SSLContext sslContext = SSLContext.getInstance("TLS");
-        sslContext.init(null, tmf.getTrustManagers(), null);
-
-        return sslContext;
-    }
-
-    protected RestTemplate getRestTemplete() {
-        if (customSslContext == null) {
-            return new RestTemplate();
-        }
-        final var sslsf = new SSLConnectionSocketFactory(customSslContext);
-        final Registry<ConnectionSocketFactory> socketFactoryRegistry = RegistryBuilder.<ConnectionSocketFactory>create()
-            .register("https", sslsf).register("http", new PlainConnectionSocketFactory()).build();
-
-        final BasicHttpClientConnectionManager connectionManager = new BasicHttpClientConnectionManager(
-            socketFactoryRegistry);
-        final CloseableHttpClient httpClient = HttpClients.custom()
-            .setConnectionManager(connectionManager).build();
-
-        final HttpComponentsClientHttpRequestFactory requestFactory = new HttpComponentsClientHttpRequestFactory(
-            httpClient);
-        return new RestTemplate(requestFactory);
-    }
 }

src/main/java/dev/dnpm/etl/processor/pseudonym/PsnDomainType.java

@@ -0,0 +1,12 @@
+package dev.dnpm.etl.processor.pseudonym;
+
+public enum PsnDomainType {
+    /**
+     * one pseudonym per original value
+     */
+    SINGLE_PSN_DOMAIN,
+    /**
+     * multiple pseudonymes for one original value
+     */
+    MULTI_PSN_DOMAIN
+}

src/main/kotlin/dev/dnpm/etl/processor/config/AppConfigProperties.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -21,19 +21,13 @@ package dev.dnpm.etl.processor.config
 
 import dev.dnpm.etl.processor.security.Role
 import org.springframework.boot.context.properties.ConfigurationProperties
-import org.springframework.boot.context.properties.DeprecatedConfigurationProperty
 
 @ConfigurationProperties(AppConfigProperties.NAME)
 data class AppConfigProperties(
-    var bwhcUri: String?,
-    @get:DeprecatedConfigurationProperty(
-        reason = "Deprecated in favor of 'app.pseudonymize.generator'",
-        replacement = "app.pseudonymize.generator"
-    )
-    var pseudonymizer: PseudonymGenerator = PseudonymGenerator.BUILDIN,
     var transformations: List<TransformationProperties> = listOf(),
     var maxRetryAttempts: Int = 3,
-    var duplicationDetection: Boolean = true
+    var duplicationDetection: Boolean = true,
+    var genomDeTestSubmission: Boolean = false
 ) {
     companion object {
         const val NAME = "app"
@@ -53,22 +47,87 @@ data class PseudonymizeConfigProperties(
 @ConfigurationProperties(GPasConfigProperties.NAME)
 data class GPasConfigProperties(
     val uri: String?,
-    val target: String = "etl-processor",
+    val patientDomain: String = "etl-processor",
+    val genomDeTanDomain: String = "ccdn",
     val username: String?,
     val password: String?,
-    @get:DeprecatedConfigurationProperty(
-        reason = "Deprecated in favor of including Root CA"
-    )
-    val sslCaLocation: String?
 ) {
     companion object {
         const val NAME = "app.pseudonymize.gpas"
     }
 }
 
+@ConfigurationProperties(ConsentConfigProperties.NAME)
+data class ConsentConfigProperties(
+    var service: ConsentService = ConsentService.NONE
+) {
+    companion object {
+        const val NAME = "app.consent"
+    }
+}
+
+@ConfigurationProperties(GIcsConfigProperties.NAME)
+data class GIcsConfigProperties(
+    /**
+     * Base URL to gICS System
+     *
+     */
+    val uri: String?,
+    val username: String? = null,
+    val password: String? = null,
+
+    /**
+     * gICS specific system
+     * **/
+    val personIdentifierSystem: String =
+        "https://ths-greifswald.de/fhir/gics/identifiers/Patienten-ID",
+
+    /**
+     * Domain of broad consent resources
+     **/
+    val broadConsentDomainName: String = "MII",
+
+    /**
+     * Domain of Modelvorhaben 64e consent resources
+     **/
+    val genomDeConsentDomainName: String = "GenomDE_MV",
+
+    /**
+     * Value to expect in case of positiv consent
+     */
+    val broadConsentPolicyCode: String = "2.16.840.1.113883.3.1937.777.24.5.3.6",
+
+    /**
+     * Consent Policy which should be used for consent check
+     */
+    val broadConsentPolicySystem: String = "urn:oid:2.16.840.1.113883.3.1937.777.24.5.3",
+
+    /**
+     * Value to expect in case of positiv consent
+     */
+    val genomeDePolicyCode: String = "sequencing",
+
+    /**
+     * Consent Policy which should be used for consent check
+     */
+    val genomeDePolicySystem: String = "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/GenomDE_MV",
+
+    /**
+     * Consent version (fixed version)
+     *
+     */
+    val genomeDeConsentVersion: String = "2.0"
+) {
+    companion object {
+        const val NAME = "app.consent.gics"
+    }
+}
+
 @ConfigurationProperties(RestTargetProperties.NAME)
 data class RestTargetProperties(
     val uri: String?,
+    val username: String?,
+    val password: String?
 ) {
     companion object {
         const val NAME = "app.rest"
@@ -79,18 +138,8 @@ data class RestTargetProperties(
 data class KafkaProperties(
     val inputTopic: String?,
     val outputTopic: String = "etl-processor",
-    @get:DeprecatedConfigurationProperty(
-        reason = "Deprecated",
-        replacement = "outputTopic"
-    )
-    val topic: String = outputTopic,
     val outputResponseTopic: String = "${outputTopic}_response",
-    @get:DeprecatedConfigurationProperty(
-        reason = "Deprecated",
-        replacement = "outputResponseTopic"
-    )
-    val responseTopic: String = outputResponseTopic,
-    val groupId: String = "${topic}_group",
+    val groupId: String = "${outputTopic}_group",
     val servers: String = ""
 ) {
     companion object {
@@ -116,6 +165,11 @@ enum class PseudonymGenerator {
     GPAS
 }
 
+enum class ConsentService {
+    NONE,
+    GICS
+}
+
 data class TransformationProperties(
     val path: String,
     val from: String,

src/main/kotlin/dev/dnpm/etl/processor/config/AppConfiguration.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -20,21 +20,29 @@
 package dev.dnpm.etl.processor.config
 
 import com.fasterxml.jackson.databind.ObjectMapper
+import dev.dnpm.etl.processor.consent.MtbFileConsentService
+import dev.dnpm.etl.processor.consent.GicsConsentService
+import dev.dnpm.etl.processor.consent.IConsentService
 import dev.dnpm.etl.processor.monitoring.*
 import dev.dnpm.etl.processor.pseudonym.AnonymizingGenerator
 import dev.dnpm.etl.processor.pseudonym.Generator
 import dev.dnpm.etl.processor.pseudonym.GpasPseudonymGenerator
 import dev.dnpm.etl.processor.pseudonym.PseudonymizeService
-import dev.dnpm.etl.processor.services.TokenRepository
-import dev.dnpm.etl.processor.services.TokenService
+import dev.dnpm.etl.processor.security.TokenRepository
+import dev.dnpm.etl.processor.security.TokenService
+import dev.dnpm.etl.processor.services.ConsentProcessor
 import dev.dnpm.etl.processor.services.Transformation
 import dev.dnpm.etl.processor.services.TransformationService
 import org.slf4j.LoggerFactory
+import org.springframework.boot.autoconfigure.condition.AnyNestedCondition
 import org.springframework.boot.autoconfigure.condition.ConditionalOnMissingBean
 import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty
 import org.springframework.boot.context.properties.EnableConfigurationProperties
 import org.springframework.context.annotation.Bean
+import org.springframework.context.annotation.Conditional
 import org.springframework.context.annotation.Configuration
+import org.springframework.context.annotation.ConfigurationCondition
+import org.springframework.data.jdbc.repository.config.AbstractJdbcConfiguration
 import org.springframework.retry.RetryCallback
 import org.springframework.retry.RetryContext
 import org.springframework.retry.RetryListener
@@ -44,6 +52,7 @@ import org.springframework.retry.support.RetryTemplateBuilder
 import org.springframework.scheduling.annotation.EnableScheduling
 import org.springframework.security.crypto.password.PasswordEncoder
 import org.springframework.security.provisioning.InMemoryUserDetailsManager
+import org.springframework.web.client.HttpClientErrorException
 import org.springframework.web.client.RestTemplate
 import reactor.core.publisher.Sinks
 import kotlin.time.Duration.Companion.seconds
@@ -55,7 +64,9 @@ import kotlin.time.toJavaDuration
     value = [
         AppConfigProperties::class,
         PseudonymizeConfigProperties::class,
-        GPasConfigProperties::class
+        GPasConfigProperties::class,
+        ConsentConfigProperties::class,
+        GIcsConfigProperties::class
     ]
 )
 @EnableScheduling
@@ -68,29 +79,31 @@ class AppConfiguration {
         return RestTemplate()
     }
 
+    @Bean
+    fun appFhirConfig(): AppFhirConfig {
+        return AppFhirConfig()
+    }
+
     @ConditionalOnProperty(value = ["app.pseudonymize.generator"], havingValue = "GPAS")
     @Bean
-    fun gpasPseudonymGenerator(configProperties: GPasConfigProperties, retryTemplate: RetryTemplate): Generator {
-        return GpasPseudonymGenerator(configProperties, retryTemplate)
+    fun gpasPseudonymGenerator(
+        configProperties: GPasConfigProperties,
+        retryTemplate: RetryTemplate,
+        restTemplate: RestTemplate,
+        appFhirConfig: AppFhirConfig
+    ): Generator {
+        logger.info("Selected 'GpasPseudonym Generator'")
+        return GpasPseudonymGenerator(configProperties, retryTemplate, restTemplate, appFhirConfig)
     }
 
-    @ConditionalOnProperty(value = ["app.pseudonymize.generator"], havingValue = "BUILDIN", matchIfMissing = true)
+    @ConditionalOnProperty(
+        value = ["app.pseudonymize.generator"],
+        havingValue = "BUILDIN",
+        matchIfMissing = true
+    )
     @Bean
     fun buildinPseudonymGenerator(): Generator {
-        return AnonymizingGenerator()
-    }
-
-    @ConditionalOnProperty(value = ["app.pseudonymizer"], havingValue = "GPAS")
-    @ConditionalOnMissingBean
-    @Bean
-    fun gpasPseudonymGeneratorOnDeprecatedProperty(configProperties: GPasConfigProperties, retryTemplate: RetryTemplate): Generator {
-        return GpasPseudonymGenerator(configProperties, retryTemplate)
-    }
-
-    @ConditionalOnProperty(value = ["app.pseudonymizer"], havingValue = "BUILDIN")
-    @ConditionalOnMissingBean
-    @Bean
-    fun buildinPseudonymGeneratorOnDeprecatedProperty(): Generator {
+        logger.info("Selected 'BUILDIN Pseudonym Generator'")
         return AnonymizingGenerator()
     }
 
@@ -103,17 +116,21 @@ class AppConfiguration {
     }
 
     @Bean
-    fun reportService(objectMapper: ObjectMapper): ReportService {
-        return ReportService(objectMapper)
+    fun reportService(): ReportService {
+        return ReportService(getObjectMapper())
+    }
+
+    @Bean
+    fun getObjectMapper(): ObjectMapper {
+        return JacksonConfig().objectMapper()
     }
 
     @Bean
     fun transformationService(
-        objectMapper: ObjectMapper,
         configProperties: AppConfigProperties
     ): TransformationService {
         logger.info("Apply ${configProperties.transformations.size} transformation rules")
-        return TransformationService(objectMapper, configProperties.transformations.map {
+        return TransformationService(getObjectMapper(), configProperties.transformations.map {
             Transformation.of(it.path) from it.from to it.to
         })
     }
@@ -122,6 +139,8 @@ class AppConfiguration {
     fun retryTemplate(configProperties: AppConfigProperties): RetryTemplate {
         return RetryTemplateBuilder()
             .notRetryOn(IllegalArgumentException::class.java)
+            .notRetryOn(HttpClientErrorException.BadRequest::class.java)
+            .notRetryOn(HttpClientErrorException.UnprocessableEntity::class.java)
             .exponentialBackoff(2.seconds.toJavaDuration(), 1.25, 5.seconds.toJavaDuration())
             .customPolicy(SimpleRetryPolicy(configProperties.maxRetryAttempts))
             .withListener(object : RetryListener {
@@ -130,7 +149,11 @@ class AppConfiguration {
                     callback: RetryCallback<T, E>,
                     throwable: Throwable
                 ) {
-                    logger.warn("Error occured: {}. Retrying {}", throwable.message, context.retryCount)
+                    logger.warn(
+                        "Error occured: {}. Retrying {}",
+                        throwable.message,
+                        context.retryCount
+                    )
                 }
             })
             .build()
@@ -138,7 +161,11 @@ class AppConfiguration {
 
     @ConditionalOnProperty(value = ["app.security.enable-tokens"], havingValue = "true")
     @Bean
-    fun tokenService(userDetailsManager: InMemoryUserDetailsManager, passwordEncoder: PasswordEncoder, tokenRepository: TokenRepository): TokenService {
+    fun tokenService(
+        userDetailsManager: InMemoryUserDetailsManager,
+        passwordEncoder: PasswordEncoder,
+        tokenRepository: TokenRepository
+    ): TokenService {
         return TokenService(userDetailsManager, passwordEncoder, tokenRepository)
     }
 
@@ -159,7 +186,11 @@ class AppConfiguration {
         gPasConfigProperties: GPasConfigProperties,
         connectionCheckUpdateProducer: Sinks.Many<ConnectionCheckResult>
     ): ConnectionCheckService {
-        return GPasConnectionCheckService(restTemplate, gPasConfigProperties, connectionCheckUpdateProducer)
+        return GPasConnectionCheckService(
+            restTemplate,
+            gPasConfigProperties,
+            connectionCheckUpdateProducer
+        )
     }
 
     @ConditionalOnProperty(value = ["app.pseudonymizer"], havingValue = "GPAS")
@@ -170,8 +201,81 @@ class AppConfiguration {
         gPasConfigProperties: GPasConfigProperties,
         connectionCheckUpdateProducer: Sinks.Many<ConnectionCheckResult>
     ): ConnectionCheckService {
-        return GPasConnectionCheckService(restTemplate, gPasConfigProperties, connectionCheckUpdateProducer)
+        return GPasConnectionCheckService(
+            restTemplate,
+            gPasConfigProperties,
+            connectionCheckUpdateProducer
+        )
+    }
+
+    @Bean
+    fun jdbcConfiguration(): AbstractJdbcConfiguration {
+        return AppJdbcConfiguration()
+    }
+
+    @Conditional(GicsEnabledCondition::class)
+    @Bean
+    fun gicsConsentService(
+        gIcsConfigProperties: GIcsConfigProperties,
+        retryTemplate: RetryTemplate,
+        restTemplate: RestTemplate,
+        appFhirConfig: AppFhirConfig
+    ): IConsentService {
+        return GicsConsentService(
+            gIcsConfigProperties,
+            retryTemplate,
+            restTemplate,
+            appFhirConfig
+        )
+    }
+
+    @Conditional(GicsEnabledCondition::class)
+    @Bean
+    fun consentProcessor(
+        configProperties: AppConfigProperties,
+        gIcsConfigProperties: GIcsConfigProperties,
+        getObjectMapper: ObjectMapper,
+        appFhirConfig: AppFhirConfig,
+        gicsConsentService: IConsentService
+    ): ConsentProcessor {
+        return ConsentProcessor(
+            configProperties,
+            gIcsConfigProperties,
+            getObjectMapper,
+            appFhirConfig.fhirContext(),
+            gicsConsentService
+        )
+    }
+
+    @Conditional(GicsEnabledCondition::class)
+    @Bean
+    fun gIcsConnectionCheckService(
+        restTemplate: RestTemplate,
+        gIcsConfigProperties: GIcsConfigProperties,
+        connectionCheckUpdateProducer: Sinks.Many<ConnectionCheckResult>
+    ): ConnectionCheckService {
+        return GIcsConnectionCheckService(
+            restTemplate,
+            gIcsConfigProperties,
+            connectionCheckUpdateProducer
+        )
+    }
+
+    @Bean
+    @ConditionalOnMissingBean
+    fun iGetConsentService(): IConsentService {
+        return MtbFileConsentService()
     }
 
 }
 
+class GicsEnabledCondition :
+    AnyNestedCondition(ConfigurationCondition.ConfigurationPhase.REGISTER_BEAN) {
+
+    @ConditionalOnProperty(name = ["app.consent.service"], havingValue = "gics")
+    @ConditionalOnProperty(name = ["app.consent.gics.uri"])
+    class OnGicsServiceSelected {
+        // Just for Condition
+    }
+
+}

src/main/kotlin/dev/dnpm/etl/processor/config/AppFhirConfig.kt

@@ -0,0 +1,16 @@
+package dev.dnpm.etl.processor.config
+
+import ca.uhn.fhir.context.FhirContext
+import org.springframework.context.annotation.Bean
+import org.springframework.context.annotation.Configuration
+
+
+@Configuration
+class AppFhirConfig {
+    private val fhirCtx: FhirContext = FhirContext.forR4()
+
+    @Bean
+    fun fhirContext(): FhirContext {
+        return fhirCtx
+    }
+}

src/main/kotlin/dev/dnpm/etl/processor/config/AppJdbcConfiguration.kt

@@ -0,0 +1,25 @@
+package dev.dnpm.etl.processor.config
+
+import dev.dnpm.etl.processor.Fingerprint
+import org.springframework.context.annotation.Configuration
+import org.springframework.core.convert.converter.Converter
+import org.springframework.data.jdbc.repository.config.AbstractJdbcConfiguration
+
+@Configuration
+class AppJdbcConfiguration : AbstractJdbcConfiguration() {
+    override fun userConverters(): MutableList<*> {
+        return mutableListOf(StringToFingerprintConverter(), FingerprintToStringConverter())
+    }
+}
+
+class StringToFingerprintConverter : Converter<String, Fingerprint> {
+    override fun convert(source: String): Fingerprint {
+        return Fingerprint(source)
+    }
+}
+
+class FingerprintToStringConverter : Converter<Fingerprint, String> {
+    override fun convert(source: Fingerprint): String {
+        return source.value
+    }
+}

src/main/kotlin/dev/dnpm/etl/processor/config/AppKafkaConfiguration.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -20,6 +20,7 @@
 package dev.dnpm.etl.processor.config
 
 import com.fasterxml.jackson.databind.ObjectMapper
+import dev.dnpm.etl.processor.consent.ConsentEvaluator
 import dev.dnpm.etl.processor.input.KafkaInputListener
 import dev.dnpm.etl.processor.monitoring.ConnectionCheckResult
 import dev.dnpm.etl.processor.monitoring.ConnectionCheckService
@@ -71,7 +72,7 @@ class AppKafkaConfiguration {
         kafkaProperties: KafkaProperties,
         kafkaResponseProcessor: KafkaResponseProcessor
     ): KafkaMessageListenerContainer<String, String> {
-        val containerProperties = ContainerProperties(kafkaProperties.responseTopic)
+        val containerProperties = ContainerProperties(kafkaProperties.outputResponseTopic)
         containerProperties.messageListener = kafkaResponseProcessor
         return KafkaMessageListenerContainer(consumerFactory, containerProperties)
     }
@@ -100,9 +101,10 @@ class AppKafkaConfiguration {
     @ConditionalOnProperty(value = ["app.kafka.input-topic"])
     fun kafkaInputListener(
         requestProcessor: RequestProcessor,
-        objectMapper: ObjectMapper
+        objectMapper: ObjectMapper,
+        consentEvaluator: ConsentEvaluator
     ): KafkaInputListener {
-        return KafkaInputListener(requestProcessor, objectMapper)
+        return KafkaInputListener(requestProcessor, consentEvaluator, objectMapper)
     }
 
     @Bean

src/main/kotlin/dev/dnpm/etl/processor/config/AppRestConfiguration.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -21,9 +21,10 @@ package dev.dnpm.etl.processor.config
 
 import dev.dnpm.etl.processor.monitoring.ConnectionCheckResult
 import dev.dnpm.etl.processor.monitoring.ConnectionCheckService
+import dev.dnpm.etl.processor.monitoring.ReportService
 import dev.dnpm.etl.processor.monitoring.RestConnectionCheckService
 import dev.dnpm.etl.processor.output.MtbFileSender
-import dev.dnpm.etl.processor.output.RestMtbFileSender
+import dev.dnpm.etl.processor.output.RestDipMtbFileSender
 import org.slf4j.LoggerFactory
 import org.springframework.boot.autoconfigure.condition.ConditionalOnMissingBean
 import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty
@@ -52,10 +53,11 @@ class AppRestConfiguration {
     fun restMtbFileSender(
         restTemplate: RestTemplate,
         restTargetProperties: RestTargetProperties,
-        retryTemplate: RetryTemplate
+        retryTemplate: RetryTemplate,
+        reportService: ReportService,
     ): MtbFileSender {
-        logger.info("Selected 'RestMtbFileSender'")
-        return RestMtbFileSender(restTemplate, restTargetProperties, retryTemplate)
+        logger.info("Selected 'RestDipMtbFileSender'")
+        return RestDipMtbFileSender(restTemplate, restTargetProperties, retryTemplate, reportService)
     }
 
     @Bean

src/main/kotlin/dev/dnpm/etl/processor/config/AppSecurityConfiguration.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2023  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -21,7 +21,7 @@ package dev.dnpm.etl.processor.config
 
 import dev.dnpm.etl.processor.security.UserRole
 import dev.dnpm.etl.processor.security.UserRoleRepository
-import dev.dnpm.etl.processor.services.UserRoleService
+import dev.dnpm.etl.processor.security.UserRoleService
 import org.slf4j.LoggerFactory
 import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty
 import org.springframework.boot.context.properties.EnableConfigurationProperties
@@ -44,6 +44,8 @@ import org.springframework.security.web.SecurityFilterChain
 import java.util.*
 
 
+private const val LOGIN_PATH = "/login"
+
 @Configuration
 @EnableConfigurationProperties(
     value = [
@@ -85,11 +87,17 @@ class AppSecurityConfiguration(
 
     @Bean
     @ConditionalOnProperty(value = ["app.security.enable-oidc"], havingValue = "true")
-    fun filterChainOidc(http: HttpSecurity, passwordEncoder: PasswordEncoder, userRoleRepository: UserRoleRepository, sessionRegistry: SessionRegistry): SecurityFilterChain {
+    fun filterChainOidc(
+        http: HttpSecurity,
+        passwordEncoder: PasswordEncoder,
+        userRoleRepository: UserRoleRepository,
+        sessionRegistry: SessionRegistry
+    ): SecurityFilterChain {
         http {
-            authorizeRequests {
+            authorizeHttpRequests {
                 authorize("/configs/**", hasRole("ADMIN"))
-                authorize("/mtbfile/**", hasAnyRole("MTBFILE"))
+                authorize("/mtbfile/**", hasAnyRole("MTBFILE", "ADMIN", "USER"))
+                authorize("/mtb/**", hasAnyRole("MTBFILE", "ADMIN", "USER"))
                 authorize("/report/**", hasAnyRole("ADMIN", "USER"))
                 authorize("*.css", permitAll)
                 authorize("*.ico", permitAll)
@@ -104,15 +112,15 @@ class AppSecurityConfiguration(
                 realmName = "ETL-Processor"
             }
             formLogin {
-                loginPage = "/login"
+                loginPage = LOGIN_PATH
             }
             oauth2Login {
-                loginPage = "/login"
+                loginPage = LOGIN_PATH
             }
             sessionManagement {
                 sessionConcurrency {
                     maximumSessions = 1
-                    expiredUrl = "/login?expired"
+                    expiredUrl = "$LOGIN_PATH?expired"
                 }
                 sessionFixation {
                     newSession()
@@ -125,13 +133,22 @@ class AppSecurityConfiguration(
 
     @Bean
     @ConditionalOnProperty(value = ["app.security.enable-oidc"], havingValue = "true")
-    fun grantedAuthoritiesMapper(userRoleRepository: UserRoleRepository, appSecurityConfigProperties: SecurityConfigProperties): GrantedAuthoritiesMapper {
+    fun grantedAuthoritiesMapper(
+        userRoleRepository: UserRoleRepository,
+        appSecurityConfigProperties: SecurityConfigProperties
+    ): GrantedAuthoritiesMapper {
         return GrantedAuthoritiesMapper { grantedAuthority ->
             grantedAuthority.filterIsInstance<OidcUserAuthority>()
                 .onEach {
                     val userRole = userRoleRepository.findByUsername(it.userInfo.preferredUsername)
                     if (userRole.isEmpty) {
-                        userRoleRepository.save(UserRole(null, it.userInfo.preferredUsername, appSecurityConfigProperties.defaultNewUserRole))
+                        userRoleRepository.save(
+                            UserRole(
+                                null,
+                                it.userInfo.preferredUsername,
+                                appSecurityConfigProperties.defaultNewUserRole
+                            )
+                        )
                     }
                 }
                 .map {
@@ -145,9 +162,10 @@ class AppSecurityConfiguration(
     @ConditionalOnProperty(value = ["app.security.enable-oidc"], havingValue = "false", matchIfMissing = true)
     fun filterChain(http: HttpSecurity, passwordEncoder: PasswordEncoder): SecurityFilterChain {
         http {
-            authorizeRequests {
+            authorizeHttpRequests {
                 authorize("/configs/**", hasRole("ADMIN"))
-                authorize("/mtbfile/**", hasAnyRole("MTBFILE"))
+                authorize("/mtbfile/**", hasAnyRole("MTBFILE", "ADMIN"))
+                authorize("/mtb/**", hasAnyRole("MTBFILE", "ADMIN"))
                 authorize("/report/**", hasRole("ADMIN"))
                 authorize(anyRequest, permitAll)
             }
@@ -155,7 +173,7 @@ class AppSecurityConfiguration(
                 realmName = "ETL-Processor"
             }
             formLogin {
-                loginPage = "/login"
+                loginPage = LOGIN_PATH
             }
             csrf { disable() }
         }

src/main/kotlin/dev/dnpm/etl/processor/config/ConsentResourceDeserializer.kt

@@ -0,0 +1,18 @@
+package dev.dnpm.etl.processor.config
+
+import com.fasterxml.jackson.core.JsonParser
+
+import com.fasterxml.jackson.databind.DeserializationContext
+import com.fasterxml.jackson.databind.JsonDeserializer
+import com.fasterxml.jackson.databind.JsonNode
+import org.hl7.fhir.r4.model.Consent
+
+class ConsentResourceDeserializer : JsonDeserializer<Consent>() {
+    override fun deserialize(p: JsonParser?, ctxt: DeserializationContext?): Consent {
+
+        val jsonNode = p?.readValueAsTree<JsonNode>()
+        val json = jsonNode?.toString()
+
+        return JacksonConfig.fhirContext().newJsonParser().parseResource(json) as Consent
+    }
+}

src/main/kotlin/dev/dnpm/etl/processor/config/ConsentResourceSerializer.kt

@@ -0,0 +1,15 @@
+package dev.dnpm.etl.processor.config
+
+import com.fasterxml.jackson.core.JsonGenerator
+import com.fasterxml.jackson.databind.JsonSerializer
+import com.fasterxml.jackson.databind.SerializerProvider
+import org.hl7.fhir.r4.model.Consent
+
+class ConsentResourceSerializer : JsonSerializer<Consent>() {
+    override fun serialize(
+        value: Consent, gen: JsonGenerator, serializers: SerializerProvider
+    ) {
+        val json = JacksonConfig.fhirContext().newJsonParser().encodeResourceToString(value)
+        gen.writeRawValue(json)
+    }
+}

src/main/kotlin/dev/dnpm/etl/processor/config/FhirResourceModule.kt

@@ -0,0 +1,12 @@
+package dev.dnpm.etl.processor.config
+
+
+import com.fasterxml.jackson.databind.module.SimpleModule
+import org.hl7.fhir.r4.model.Consent
+
+class FhirResourceModule : SimpleModule() {
+    init {
+        addSerializer(Consent::class.java, ConsentResourceSerializer())
+        addDeserializer(Consent::class.java, ConsentResourceDeserializer())
+    }
+}

src/main/kotlin/dev/dnpm/etl/processor/config/JacksonConfig.kt

@@ -0,0 +1,27 @@
+package dev.dnpm.etl.processor.config
+
+import ca.uhn.fhir.context.FhirContext
+import org.springframework.context.annotation.Bean
+import org.springframework.context.annotation.Configuration
+import com.fasterxml.jackson.databind.ObjectMapper
+import com.fasterxml.jackson.databind.SerializationFeature
+import com.fasterxml.jackson.datatype.jsr310.JavaTimeModule
+
+@Configuration
+class JacksonConfig {
+
+    companion object {
+        var fhirContext: FhirContext = FhirContext.forR4()
+
+        @JvmStatic
+        fun fhirContext(): FhirContext {
+            return fhirContext
+        }
+    }
+
+    @Bean
+    fun objectMapper(): ObjectMapper = ObjectMapper().registerModule(FhirResourceModule())
+        .disable(SerializationFeature.WRITE_DATES_AS_TIMESTAMPS).registerModule(
+            JavaTimeModule()
+        )
+}

src/main/kotlin/dev/dnpm/etl/processor/consent/ConsentEvaluator.kt

@@ -0,0 +1,66 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.consent
+
+import dev.pcvolkmer.mv64e.mtb.ConsentProvision
+import dev.pcvolkmer.mv64e.mtb.ModelProjectConsentPurpose
+import dev.pcvolkmer.mv64e.mtb.Mtb
+import org.springframework.stereotype.Service
+
+/**
+ * Evaluates consent using provided consent service and file based consent information
+ */
+@Service
+class ConsentEvaluator(
+    private val consentService: IConsentService
+) {
+    fun check(mtbFile: Mtb): ConsentEvaluation {
+        val ttpConsentStatus = consentService.getTtpBroadConsentStatus(mtbFile.patient.id)
+        val consentGiven = ttpConsentStatus == TtpConsentStatus.BROAD_CONSENT_GIVEN
+                || ttpConsentStatus == TtpConsentStatus.GENOM_DE_CONSENT_SEQUENCING_PERMIT
+                // Aktuell nur Modellvorhaben Consent im File
+                || ttpConsentStatus == TtpConsentStatus.UNKNOWN_CHECK_FILE && mtbFile.metadata?.modelProjectConsent?.provisions?.any {
+                    it.purpose == ModelProjectConsentPurpose.SEQUENCING
+                            && it.type == ConsentProvision.PERMIT
+                } == true
+
+        return ConsentEvaluation(ttpConsentStatus, consentGiven)
+    }
+}
+
+data class ConsentEvaluation(private val ttpConsentStatus: TtpConsentStatus, private val consentGiven: Boolean) {
+    /**
+     * Checks if any required consent is present
+     */
+    fun hasConsent(): Boolean {
+        return consentGiven
+    }
+
+    /**
+     * Returns the consent status
+     */
+    fun getStatus(): TtpConsentStatus {
+        if (ttpConsentStatus == TtpConsentStatus.UNKNOWN_CHECK_FILE) {
+            // in case ttp check is disabled - we propagate rejected status anyway
+            return TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED
+        }
+        return ttpConsentStatus
+    }
+}

src/main/kotlin/dev/dnpm/etl/processor/input/KafkaInputListener.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -20,29 +20,58 @@
 package dev.dnpm.etl.processor.input
 
 import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.Consent
-import de.ukw.ccc.bwhc.dto.MtbFile
+import dev.dnpm.etl.processor.CustomMediaType
+import dev.dnpm.etl.processor.PatientId
+import dev.dnpm.etl.processor.RequestId
+import dev.dnpm.etl.processor.consent.ConsentEvaluator
+import dev.dnpm.etl.processor.consent.TtpConsentStatus
 import dev.dnpm.etl.processor.services.RequestProcessor
+import dev.pcvolkmer.mv64e.mtb.Mtb
 import org.apache.kafka.clients.consumer.ConsumerRecord
 import org.slf4j.LoggerFactory
+import org.springframework.http.MediaType
 import org.springframework.kafka.listener.MessageListener
 
 class KafkaInputListener(
     private val requestProcessor: RequestProcessor,
+    private val consentEvaluator: ConsentEvaluator,
     private val objectMapper: ObjectMapper
 ) : MessageListener<String, String> {
     private val logger = LoggerFactory.getLogger(KafkaInputListener::class.java)
 
-    override fun onMessage(data: ConsumerRecord<String, String>) {
-        val mtbFile = objectMapper.readValue(data.value(), MtbFile::class.java)
-        val firstRequestIdHeader = data.headers().headers("requestId")?.firstOrNull()
-        val requestId = if (null != firstRequestIdHeader) {
-            String(firstRequestIdHeader.value())
-        } else {
-            ""
+    override fun onMessage(record: ConsumerRecord<String, String>) {
+        when (guessMimeType(record)) {
+            MediaType.APPLICATION_JSON_VALUE -> handleDnpmV2Message(record)
+            CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON_VALUE -> handleDnpmV2Message(record)
+            else -> {
+                /* ignore other messages */
+            }
+        }
     }
 
-        if (mtbFile.consent.status == Consent.Status.ACTIVE) {
+    private fun guessMimeType(record: ConsumerRecord<String, String>): String {
+        if (record.headers().headers("contentType").toList().isEmpty()) {
+            // Fallback if no contentType set (old behavior)
+            return MediaType.APPLICATION_JSON_VALUE
+        }
+
+        return record.headers().headers("contentType")?.firstOrNull()?.value().contentToString()
+    }
+
+    private fun handleDnpmV2Message(record: ConsumerRecord<String, String>) {
+        // Do not handle DNPM-V2 for now
+        logger.warn("Ignoring MTB File in DNPM V2 format: Not implemented yet")
+
+        val mtbFile = objectMapper.readValue(record.value(), Mtb::class.java)
+        val patientId = PatientId(mtbFile.patient.id)
+        val firstRequestIdHeader = record.headers().headers("requestId")?.firstOrNull()
+        val requestId = if (null != firstRequestIdHeader) {
+            RequestId(String(firstRequestIdHeader.value()))
+        } else {
+            RequestId("")
+        }
+
+        if (consentEvaluator.check(mtbFile).hasConsent()) {
             logger.debug("Accepted MTB File for processing")
             if (requestId.isBlank()) {
                 requestProcessor.processMtbFile(mtbFile)
@@ -52,10 +81,15 @@ class KafkaInputListener(
         } else {
             logger.debug("Accepted MTB File and process deletion")
             if (requestId.isBlank()) {
-                requestProcessor.processDeletion(mtbFile.patient.id)
+                requestProcessor.processDeletion(patientId, TtpConsentStatus.UNKNOWN_CHECK_FILE)
             } else {
-                requestProcessor.processDeletion(mtbFile.patient.id, requestId)
+                requestProcessor.processDeletion(
+                    patientId,
+                    requestId,
+                    TtpConsentStatus.UNKNOWN_CHECK_FILE
+                )
             }
         }
     }
+
 }

src/main/kotlin/dev/dnpm/etl/processor/input/MtbFileRestController.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -19,19 +19,23 @@
 
 package dev.dnpm.etl.processor.input
 
-import de.ukw.ccc.bwhc.dto.Consent
-import de.ukw.ccc.bwhc.dto.MtbFile
+import dev.dnpm.etl.processor.CustomMediaType
+import dev.dnpm.etl.processor.PatientId
+import dev.dnpm.etl.processor.consent.ConsentEvaluator
+import dev.dnpm.etl.processor.consent.TtpConsentStatus
 import dev.dnpm.etl.processor.services.RequestProcessor
+import dev.pcvolkmer.mv64e.mtb.Mtb
 import org.slf4j.LoggerFactory
+import org.springframework.http.MediaType
 import org.springframework.http.ResponseEntity
 import org.springframework.web.bind.annotation.*
 
 @RestController
-@RequestMapping(path = ["mtbfile"])
+@RequestMapping(path = ["mtbfile", "mtb"])
 class MtbFileRestController(
     private val requestProcessor: RequestProcessor,
+    private val consentEvaluator: ConsentEvaluator
 ) {
-
     private val logger = LoggerFactory.getLogger(MtbFileRestController::class.java)
 
     @GetMapping
@@ -39,22 +43,24 @@ class MtbFileRestController(
         return ResponseEntity.ok("Test")
     }
 
-    @PostMapping
-    fun mtbFile(@RequestBody mtbFile: MtbFile): ResponseEntity<Void> {
-        if (mtbFile.consent.status == Consent.Status.ACTIVE) {
-            logger.debug("Accepted MTB File for processing")
+    @PostMapping(consumes = [MediaType.APPLICATION_JSON_VALUE, CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON_VALUE])
+    fun mtbFile(@RequestBody mtbFile: Mtb): ResponseEntity<Unit> {
+        val consentEvaluation = consentEvaluator.check(mtbFile)
+        if (consentEvaluation.hasConsent()) {
+            logger.debug("Accepted MTB File (DNPM V2) for processing")
             requestProcessor.processMtbFile(mtbFile)
         } else {
-            logger.debug("Accepted MTB File and process deletion")
-            requestProcessor.processDeletion(mtbFile.patient.id)
+            logger.debug("Accepted MTB File (DNPM V2) and process deletion")
+            val patientId = PatientId(mtbFile.patient.id)
+            requestProcessor.processDeletion(patientId, consentEvaluation.getStatus())
         }
         return ResponseEntity.accepted().build()
     }
 
     @DeleteMapping(path = ["{patientId}"])
-    fun deleteData(@PathVariable patientId: String): ResponseEntity<Void> {
+    fun deleteData(@PathVariable patientId: String): ResponseEntity<Unit> {
         logger.debug("Accepted patient ID to process deletion")
-        requestProcessor.processDeletion(patientId)
+        requestProcessor.processDeletion(PatientId(patientId), TtpConsentStatus.UNKNOWN_CHECK_FILE)
         return ResponseEntity.accepted().build()
     }
 

src/main/kotlin/dev/dnpm/etl/processor/monitoring/ConnectionCheckService.kt

@@ -20,28 +20,25 @@
 
 package dev.dnpm.etl.processor.monitoring
 
+import dev.dnpm.etl.processor.config.GIcsConfigProperties
 import dev.dnpm.etl.processor.config.GPasConfigProperties
 import dev.dnpm.etl.processor.config.RestTargetProperties
 import jakarta.annotation.PostConstruct
 import org.apache.kafka.clients.consumer.Consumer
 import org.apache.kafka.common.errors.TimeoutException
 import org.springframework.beans.factory.annotation.Qualifier
-import org.springframework.http.HttpEntity
-import org.springframework.http.HttpHeaders
-import org.springframework.http.HttpMethod
-import org.springframework.http.HttpStatus
-import org.springframework.http.MediaType
-import org.springframework.http.RequestEntity
+import org.springframework.http.*
 import org.springframework.scheduling.annotation.Scheduled
 import org.springframework.web.client.RestTemplate
 import org.springframework.web.util.UriComponentsBuilder
 import reactor.core.publisher.Sinks
+import java.time.Instant
 import kotlin.time.Duration.Companion.seconds
 import kotlin.time.toJavaDuration
 
-interface ConnectionCheckService {
+fun interface ConnectionCheckService {
 
-    fun connectionAvailable(): Boolean
+    fun connectionAvailable(): ConnectionCheckResult
 
 }
 
@@ -51,9 +48,33 @@ sealed class ConnectionCheckResult {
 
     abstract val available: Boolean
 
-    data class KafkaConnectionCheckResult(override val available: Boolean) : ConnectionCheckResult()
-    data class RestConnectionCheckResult(override val available: Boolean) : ConnectionCheckResult()
-    data class GPasConnectionCheckResult(override val available: Boolean) : ConnectionCheckResult()
+    abstract val timestamp: Instant
+
+    abstract val lastChange: Instant
+
+    data class KafkaConnectionCheckResult(
+        override val available: Boolean,
+        override val timestamp: Instant,
+        override val lastChange: Instant
+    ) : ConnectionCheckResult()
+
+    data class RestConnectionCheckResult(
+        override val available: Boolean,
+        override val timestamp: Instant,
+        override val lastChange: Instant
+    ) : ConnectionCheckResult()
+
+    data class GPasConnectionCheckResult(
+        override val available: Boolean,
+        override val timestamp: Instant,
+        override val lastChange: Instant
+    ) : ConnectionCheckResult()
+
+    data class GIcsConnectionCheckResult(
+        override val available: Boolean,
+        override val timestamp: Instant,
+        override val lastChange: Instant
+    ) : ConnectionCheckResult()
 }
 
 class KafkaConnectionCheckService(
@@ -62,25 +83,33 @@ class KafkaConnectionCheckService(
     private val connectionCheckUpdateProducer: Sinks.Many<ConnectionCheckResult>
 ) : OutputConnectionCheckService {
 
-    private var connectionAvailable: Boolean = false
-
+    private var result = ConnectionCheckResult.KafkaConnectionCheckResult(false, Instant.now(), Instant.now())
 
     @PostConstruct
     @Scheduled(cron = "0 * * * * *")
     fun check() {
-        connectionAvailable = try {
-            null != consumer.listTopics(5.seconds.toJavaDuration())
-        } catch (e: TimeoutException) {
-            false
+        result = try {
+            val available = null != consumer.listTopics(5.seconds.toJavaDuration())
+            ConnectionCheckResult.KafkaConnectionCheckResult(
+                available,
+                Instant.now(),
+                if (result.available == available) { result.lastChange } else { Instant.now() }
+            )
+        } catch (_: TimeoutException) {
+            ConnectionCheckResult.KafkaConnectionCheckResult(
+                false,
+                Instant.now(),
+                if (!result.available) { result.lastChange } else { Instant.now() }
+            )
         }
         connectionCheckUpdateProducer.emitNext(
-            ConnectionCheckResult.KafkaConnectionCheckResult(connectionAvailable),
+            result,
             Sinks.EmitFailureHandler.FAIL_FAST
         )
     }
 
-    override fun connectionAvailable(): Boolean {
-        return this.connectionAvailable
+    override fun connectionAvailable(): ConnectionCheckResult.KafkaConnectionCheckResult {
+        return this.result
     }
 
 }
@@ -92,27 +121,41 @@ class RestConnectionCheckService(
     private val connectionCheckUpdateProducer: Sinks.Many<ConnectionCheckResult>
 ) : OutputConnectionCheckService {
 
-    private var connectionAvailable: Boolean = false
+    private var result = ConnectionCheckResult.RestConnectionCheckResult(false, Instant.now(), Instant.now())
 
     @PostConstruct
     @Scheduled(cron = "0 * * * * *")
     fun check() {
-        connectionAvailable = try {
-            restTemplate.getForEntity(
-                restTargetProperties.uri?.replace("/etl/api", "").toString(),
+        result = try {
+            val available = restTemplate.getForEntity(
+                UriComponentsBuilder.fromUriString(restTargetProperties.uri.toString())
+                    .pathSegment("mtb")
+                    .pathSegment("kaplan-meier")
+                    .pathSegment("config")
+                    .toUriString(),
                 String::class.java
             ).statusCode == HttpStatus.OK
-        } catch (e: Exception) {
-            false
+
+            ConnectionCheckResult.RestConnectionCheckResult(
+                available,
+                Instant.now(),
+                if (result.available == available) { result.lastChange } else { Instant.now() }
+            )
+        } catch (_: Exception) {
+            ConnectionCheckResult.RestConnectionCheckResult(
+                false,
+                Instant.now(),
+                if (!result.available) { result.lastChange } else { Instant.now() }
+            )
         }
         connectionCheckUpdateProducer.emitNext(
-            ConnectionCheckResult.RestConnectionCheckResult(connectionAvailable),
+            result,
             Sinks.EmitFailureHandler.FAIL_FAST
         )
     }
 
-    override fun connectionAvailable(): Boolean {
-        return this.connectionAvailable
+    override fun connectionAvailable(): ConnectionCheckResult.RestConnectionCheckResult {
+        return this.result
     }
 }
 
@@ -123,40 +166,101 @@ class GPasConnectionCheckService(
     private val connectionCheckUpdateProducer: Sinks.Many<ConnectionCheckResult>
 ) : ConnectionCheckService {
 
-    private var connectionAvailable: Boolean = false
+    private var result = ConnectionCheckResult.GPasConnectionCheckResult(false, Instant.now(), Instant.now())
 
     @PostConstruct
     @Scheduled(cron = "0 * * * * *")
     fun check() {
-        connectionAvailable = try {
+        result = try {
             val uri = UriComponentsBuilder.fromUriString(
-                gPasConfigProperties.uri?.replace("/\$pseudonymizeAllowCreate", "/\$pseudonymize").toString()
-            )
-                .queryParam("target", gPasConfigProperties.target)
-                .queryParam("original", "???")
-                .build().toUri()
+                gPasConfigProperties.uri?.replace("/\$pseudonymizeAllowCreate", "/metadata").toString()
+            ).build().toUri()
 
             val headers = HttpHeaders()
             headers.contentType = MediaType.APPLICATION_JSON
             if (!gPasConfigProperties.username.isNullOrBlank() && !gPasConfigProperties.password.isNullOrBlank()) {
                 headers.setBasicAuth(gPasConfigProperties.username, gPasConfigProperties.password)
             }
-            restTemplate.exchange(
+
+            val available = restTemplate.exchange(
                 uri,
                 HttpMethod.GET,
                 HttpEntity<Void>(headers),
                 Void::class.java
             ).statusCode == HttpStatus.OK
-        } catch (e: Exception) {
-            false
+
+            ConnectionCheckResult.GPasConnectionCheckResult(
+                available,
+                Instant.now(),
+                if (result.available == available) { result.lastChange } else { Instant.now() }
+            )
+        } catch (_: Exception) {
+            ConnectionCheckResult.GPasConnectionCheckResult(
+                false,
+                Instant.now(),
+                if (!result.available) { result.lastChange } else { Instant.now() }
+            )
         }
         connectionCheckUpdateProducer.emitNext(
-            ConnectionCheckResult.GPasConnectionCheckResult(connectionAvailable),
+            result,
             Sinks.EmitFailureHandler.FAIL_FAST
         )
     }
 
-    override fun connectionAvailable(): Boolean {
-        return this.connectionAvailable
+    override fun connectionAvailable(): ConnectionCheckResult.GPasConnectionCheckResult {
+        return this.result
+    }
+}
+
+class GIcsConnectionCheckService(
+    private val restTemplate: RestTemplate,
+    private val gIcsConfigProperties: GIcsConfigProperties,
+    @Qualifier("connectionCheckUpdateProducer")
+    private val connectionCheckUpdateProducer: Sinks.Many<ConnectionCheckResult>
+) : ConnectionCheckService {
+
+    private var result = ConnectionCheckResult.GIcsConnectionCheckResult(false, Instant.now(), Instant.now())
+
+    @PostConstruct
+    @Scheduled(cron = "0 * * * * *")
+    fun check() {
+        result = try {
+
+            val uri = UriComponentsBuilder.fromUriString(
+                gIcsConfigProperties.uri.toString()).path("/metadata").build().toUri()
+
+            val headers = HttpHeaders()
+            headers.contentType = MediaType.APPLICATION_JSON
+            if (!gIcsConfigProperties.username.isNullOrBlank() && !gIcsConfigProperties.password.isNullOrBlank()) {
+                headers.setBasicAuth(gIcsConfigProperties.username, gIcsConfigProperties.password)
+            }
+
+            val available = restTemplate.exchange(
+                uri,
+                HttpMethod.GET,
+                HttpEntity<Void>(headers),
+                Void::class.java
+            ).statusCode == HttpStatus.OK
+
+            ConnectionCheckResult.GIcsConnectionCheckResult(
+                available,
+                Instant.now(),
+                if (result.available == available) { result.lastChange } else { Instant.now() }
+            )
+        } catch (_: Exception) {
+            ConnectionCheckResult.GIcsConnectionCheckResult(
+                false,
+                Instant.now(),
+                if (!result.available) { result.lastChange } else { Instant.now() }
+            )
+        }
+        connectionCheckUpdateProducer.emitNext(
+            result,
+            Sinks.EmitFailureHandler.FAIL_FAST
+        )
+    }
+
+    override fun connectionAvailable(): ConnectionCheckResult.GIcsConnectionCheckResult {
+        return this.result
     }
 }

src/main/kotlin/dev/dnpm/etl/processor/monitoring/ReportService.kt

@@ -19,11 +19,15 @@
 
 package dev.dnpm.etl.processor.monitoring
 
+import com.fasterxml.jackson.annotation.JsonAlias
 import com.fasterxml.jackson.annotation.JsonIgnoreProperties
 import com.fasterxml.jackson.annotation.JsonValue
 import com.fasterxml.jackson.core.JsonParseException
 import com.fasterxml.jackson.databind.JsonMappingException
 import com.fasterxml.jackson.databind.ObjectMapper
+import dev.dnpm.etl.processor.monitoring.ReportService.Issue
+import dev.dnpm.etl.processor.monitoring.ReportService.Severity
+import java.util.Optional
 
 class ReportService(
     private val objectMapper: ObjectMapper
@@ -54,7 +58,11 @@ class ReportService(
     private data class DataQualityReport(val issues: List<Issue>)
 
     @JsonIgnoreProperties(ignoreUnknown = true)
-    data class Issue(val severity: Severity, val message: String)
+    data class Issue(
+        val severity: Severity,
+        @JsonAlias("details") val message: String,
+        val path: Optional<String> = Optional.empty()
+    )
 
     enum class Severity(@JsonValue val value: String) {
         FATAL("fatal"),
@@ -63,3 +71,12 @@ class ReportService(
         INFO("info")
     }
 }
+
+fun List<Issue>.asRequestStatus(): RequestStatus {
+    val severity = this.minOfOrNull { it.severity }
+    return when (severity) {
+        Severity.FATAL, Severity.ERROR -> RequestStatus.ERROR
+        Severity.WARNING -> RequestStatus.WARNING
+        else -> RequestStatus.SUCCESS
+    }
+}

src/main/kotlin/dev/dnpm/etl/processor/monitoring/Request.kt

@@ -19,10 +19,12 @@
 
 package dev.dnpm.etl.processor.monitoring
 
+import dev.dnpm.etl.processor.*
 import org.springframework.data.annotation.Id
 import org.springframework.data.domain.Page
 import org.springframework.data.domain.Pageable
 import org.springframework.data.jdbc.repository.query.Query
+import org.springframework.data.relational.core.mapping.Column
 import org.springframework.data.relational.core.mapping.Embedded
 import org.springframework.data.relational.core.mapping.Table
 import org.springframework.data.repository.CrudRepository
@@ -30,26 +32,48 @@ import org.springframework.data.repository.PagingAndSortingRepository
 import java.time.Instant
 import java.util.*
 
-typealias RequestId = UUID
-
 @Table("request")
 data class Request(
     @Id val id: Long? = null,
-    val uuid: String = RequestId.randomUUID().toString(),
-    val patientId: String,
-    val pid: String,
-    val fingerprint: String,
+    val uuid: RequestId = randomRequestId(),
+    val patientPseudonym: PatientPseudonym,
+    val pid: PatientId,
+    @Column("fingerprint")
+    val fingerprint: Fingerprint,
     val type: RequestType,
     var status: RequestStatus,
     var processedAt: Instant = Instant.now(),
     @Embedded.Nullable var report: Report? = null
-)
+) {
+    constructor(
+        uuid: RequestId,
+        patientPseudonym: PatientPseudonym,
+        pid: PatientId,
+        fingerprint: Fingerprint,
+        type: RequestType,
+        status: RequestStatus
+    ) :
+            this(null, uuid, patientPseudonym, pid, fingerprint, type, status, Instant.now())
 
+    constructor(
+        uuid: RequestId,
+        patientPseudonym: PatientPseudonym,
+        pid: PatientId,
+        fingerprint: Fingerprint,
+        type: RequestType,
+        status: RequestStatus,
+        processedAt: Instant
+    ) :
+            this(null, uuid, patientPseudonym, pid, fingerprint, type, status, processedAt)
+}
+
+@JvmRecord
 data class Report(
     val description: String,
     val dataQualityReport: String = ""
 )
 
+@JvmRecord
 data class CountedState(
     val count: Int,
     val status: RequestStatus,
@@ -57,17 +81,17 @@ data class CountedState(
 
 interface RequestRepository : CrudRepository<Request, Long>, PagingAndSortingRepository<Request, Long> {
 
-    fun findAllByPatientIdOrderByProcessedAtDesc(patientId: String): List<Request>
+    fun findAllByPatientPseudonymOrderByProcessedAtDesc(patientId: PatientPseudonym): List<Request>
 
-    fun findByUuidEquals(uuid: String): Optional<Request>
+    fun findByUuidEquals(uuid: RequestId): Optional<Request>
 
-    fun findRequestByPatientId(patientId: String, pageable: Pageable): Page<Request>
+    fun findRequestByPatientPseudonym(patientPseudonym: PatientPseudonym, pageable: Pageable): Page<Request>
 
     @Query("SELECT count(*) AS count, status FROM request WHERE type = 'MTB_FILE' GROUP BY status ORDER BY status, count DESC;")
     fun countStates(): List<CountedState>
 
     @Query("SELECT count(*) AS count, status FROM (" +
-            "SELECT status, rank() OVER (PARTITION BY patient_id ORDER BY processed_at DESC) AS rank FROM request " +
+            "SELECT status, rank() OVER (PARTITION BY patient_pseudonym ORDER BY processed_at DESC) AS rank FROM request " +
             "WHERE type = 'MTB_FILE' AND status NOT IN ('DUPLICATION') " +
             ") rank WHERE rank = 1 GROUP BY status ORDER BY status, count DESC;")
     fun findPatientUniqueStates(): List<CountedState>
@@ -76,7 +100,7 @@ interface RequestRepository : CrudRepository<Request, Long>, PagingAndSortingRep
     fun countDeleteStates(): List<CountedState>
 
     @Query("SELECT count(*) AS count, status FROM (" +
-            "SELECT status, rank() OVER (PARTITION BY patient_id ORDER BY processed_at DESC) AS rank FROM request " +
+            "SELECT status, rank() OVER (PARTITION BY patient_pseudonym ORDER BY processed_at DESC) AS rank FROM request " +
             "WHERE type = 'DELETE'" +
             ") rank WHERE rank = 1 GROUP BY status ORDER BY status, count DESC;")
     fun findPatientUniqueDeleteStates(): List<CountedState>

src/main/kotlin/dev/dnpm/etl/processor/monitoring/RequestStatus.kt

@@ -24,5 +24,6 @@ enum class RequestStatus(val value: String) {
     WARNING("warning"),
     ERROR("error"),
     UNKNOWN("unknown"),
-    DUPLICATION("duplication")
+    DUPLICATION("duplication"),
+    NO_CONSENT("no-consent")
 }

src/main/kotlin/dev/dnpm/etl/processor/output/KafkaMtbFileSender.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -20,11 +20,14 @@
 package dev.dnpm.etl.processor.output
 
 import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.Consent
-import de.ukw.ccc.bwhc.dto.MtbFile
+import dev.dnpm.etl.processor.CustomMediaType
 import dev.dnpm.etl.processor.config.KafkaProperties
 import dev.dnpm.etl.processor.monitoring.RequestStatus
+import dev.pcvolkmer.mv64e.mtb.Mtb
+import dev.pcvolkmer.mv64e.mtb.MvhMetadata
+import org.apache.kafka.clients.producer.ProducerRecord
 import org.slf4j.LoggerFactory
+import org.springframework.http.MediaType
 import org.springframework.kafka.core.KafkaTemplate
 import org.springframework.retry.support.RetryTemplate
 
@@ -37,14 +40,24 @@ class KafkaMtbFileSender(
 
     private val logger = LoggerFactory.getLogger(KafkaMtbFileSender::class.java)
 
-    override fun send(request: MtbFileSender.MtbFileRequest): MtbFileSender.Response {
+    override fun <T> send(request: MtbFileRequest<T>): MtbFileSender.Response {
         return try {
             return retryTemplate.execute<MtbFileSender.Response, Exception> {
-                val result = kafkaTemplate.send(
-                    kafkaProperties.topic,
+                val record =
+                    ProducerRecord(
+                        kafkaProperties.outputTopic,
                         key(request),
-                    objectMapper.writeValueAsString(Data(request.requestId, request.mtbFile))
+                        objectMapper.writeValueAsString(request)
                     )
+                when (request) {
+                    is DnpmV2MtbFileRequest -> record.headers()
+                        .add(
+                            "contentType",
+                            CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON_VALUE.toByteArray()
+                        )
+                }
+
+                val result = kafkaTemplate.send(record)
                 if (result.get() != null) {
                     logger.debug("Sent file via KafkaMtbFileSender")
                     MtbFileSender.Response(RequestStatus.UNKNOWN)
@@ -58,24 +71,27 @@ class KafkaMtbFileSender(
         }
     }
 
-    override fun send(request: MtbFileSender.DeleteRequest): MtbFileSender.Response {
-        val dummyMtbFile = MtbFile.builder()
-            .withConsent(
-                Consent.builder()
-                    .withPatient(request.patientId)
-                    .withStatus(Consent.Status.REJECTED)
-                    .build()
-            )
+    override fun send(request: DeleteRequest): MtbFileSender.Response {
+        val dummyMtbFile = Mtb.builder()
+            .metadata(MvhMetadata())
             .build()
 
         return try {
             return retryTemplate.execute<MtbFileSender.Response, Exception> {
-                val result = kafkaTemplate.send(
-                    kafkaProperties.topic,
+                val record =
+                    ProducerRecord(
+                        kafkaProperties.outputTopic,
                         key(request),
-                    objectMapper.writeValueAsString(Data(request.requestId, dummyMtbFile))
+                        // Always use old BwhcV1FileRequest with Consent REJECT
+                        objectMapper.writeValueAsString(
+                            DnpmV2MtbFileRequest(
+                                request.requestId,
+                                dummyMtbFile
+                            )
+                        )
                     )
 
+                val result = kafkaTemplate.send(record)
                 if (result.get() != null) {
                     logger.debug("Sent deletion request via KafkaMtbFileSender")
                     MtbFileSender.Response(RequestStatus.UNKNOWN)
@@ -90,16 +106,14 @@ class KafkaMtbFileSender(
     }
 
     override fun endpoint(): String {
-        return "${this.kafkaProperties.servers} (${this.kafkaProperties.topic}/${this.kafkaProperties.responseTopic})"
+        return "${this.kafkaProperties.servers} (${this.kafkaProperties.outputTopic}/${this.kafkaProperties.outputResponseTopic})"
     }
 
-    private fun key(request: MtbFileSender.MtbFileRequest): String {
-        return "{\"pid\": \"${request.mtbFile.patient.id}\"}"
+    private fun key(request: MtbRequest): String {
+        return when (request) {
+            is DnpmV2MtbFileRequest -> "{\"pid\": \"${request.content.patient.id}\"}"
+            is DeleteRequest -> "{\"pid\": \"${request.patientId.value}\"}"
+            else -> throw IllegalArgumentException("Unsupported request type: ${request::class.simpleName}")
         }
-
-    private fun key(request: MtbFileSender.DeleteRequest): String {
-        return "{\"pid\": \"${request.patientId}\"}"
     }
-
-    data class Data(val requestId: String, val content: MtbFile)
 }

src/main/kotlin/dev/dnpm/etl/processor/output/MtbFileSender.kt

@@ -19,23 +19,17 @@
 
 package dev.dnpm.etl.processor.output
 
-import de.ukw.ccc.bwhc.dto.MtbFile
 import dev.dnpm.etl.processor.monitoring.RequestStatus
 import org.springframework.http.HttpStatusCode
 
 interface MtbFileSender {
-    fun send(request: MtbFileRequest): Response
+    fun <T> send(request: MtbFileRequest<T>): Response
 
     fun send(request: DeleteRequest): Response
 
     fun endpoint(): String
 
     data class Response(val status: RequestStatus, val body: String = "")
-
-    data class MtbFileRequest(val requestId: String, val mtbFile: MtbFile)
-
-    data class DeleteRequest(val requestId: String, val patientId: String)
-
 }
 
 fun Int.asRequestStatus(): RequestStatus {

src/main/kotlin/dev/dnpm/etl/processor/output/MtbRequest.kt

@@ -0,0 +1,49 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.output
+
+import dev.dnpm.etl.processor.PatientPseudonym
+import dev.dnpm.etl.processor.RequestId
+import dev.pcvolkmer.mv64e.mtb.Mtb
+
+interface MtbRequest {
+    val requestId: RequestId
+}
+
+sealed interface MtbFileRequest<out T> : MtbRequest {
+    override val requestId: RequestId
+    val content: T
+
+    fun patientPseudonym(): PatientPseudonym
+}
+
+data class DnpmV2MtbFileRequest(
+    override val requestId: RequestId,
+    override val content: Mtb
+) : MtbFileRequest<Mtb> {
+    override fun patientPseudonym(): PatientPseudonym {
+        return PatientPseudonym(content.patient.id)
+    }
+}
+
+data class DeleteRequest(
+    override val requestId: RequestId,
+    val patientId: PatientPseudonym
+) : MtbRequest

src/main/kotlin/dev/dnpm/etl/processor/output/RestDipMtbFileSender.kt

@@ -0,0 +1,55 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.output
+
+import dev.dnpm.etl.processor.PatientPseudonym
+import dev.dnpm.etl.processor.config.RestTargetProperties
+import dev.dnpm.etl.processor.monitoring.ReportService
+import org.springframework.retry.support.RetryTemplate
+import org.springframework.web.client.RestTemplate
+import org.springframework.web.util.UriComponentsBuilder
+
+class RestDipMtbFileSender(
+    restTemplate: RestTemplate,
+    private val restTargetProperties: RestTargetProperties,
+    retryTemplate: RetryTemplate,
+    reportService: ReportService
+) : RestMtbFileSender(restTemplate, restTargetProperties, retryTemplate, reportService) {
+
+    override fun sendUrl(): String {
+        return UriComponentsBuilder
+            .fromUriString(restTargetProperties.uri.toString())
+            .pathSegment("mtb")
+            .pathSegment("etl")
+            .pathSegment("patient-record")
+            .toUriString()
+    }
+
+    override fun deleteUrl(patientId: PatientPseudonym): String {
+        return UriComponentsBuilder
+            .fromUriString(restTargetProperties.uri.toString())
+            .pathSegment("mtb")
+            .pathSegment("etl")
+            .pathSegment("patient")
+            .pathSegment(patientId.value)
+            .toUriString()
+    }
+
+}

src/main/kotlin/dev/dnpm/etl/processor/output/RestMtbFileSender.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -19,62 +19,71 @@
 
 package dev.dnpm.etl.processor.output
 
+import dev.dnpm.etl.processor.CustomMediaType
+import dev.dnpm.etl.processor.PatientPseudonym
 import dev.dnpm.etl.processor.config.RestTargetProperties
+import dev.dnpm.etl.processor.monitoring.ReportService
 import dev.dnpm.etl.processor.monitoring.RequestStatus
+import dev.dnpm.etl.processor.monitoring.asRequestStatus
 import org.slf4j.LoggerFactory
 import org.springframework.http.HttpEntity
 import org.springframework.http.HttpHeaders
 import org.springframework.http.MediaType
 import org.springframework.retry.support.RetryTemplate
 import org.springframework.web.client.RestClientException
+import org.springframework.web.client.RestClientResponseException
 import org.springframework.web.client.RestTemplate
 
-class RestMtbFileSender(
+abstract class RestMtbFileSender(
     private val restTemplate: RestTemplate,
     private val restTargetProperties: RestTargetProperties,
-    private val retryTemplate: RetryTemplate
+    private val retryTemplate: RetryTemplate,
+    private val reportService: ReportService
 ) : MtbFileSender {
 
     private val logger = LoggerFactory.getLogger(RestMtbFileSender::class.java)
 
-    override fun send(request: MtbFileSender.MtbFileRequest): MtbFileSender.Response {
+    abstract fun sendUrl(): String
+
+    abstract fun deleteUrl(patientId: PatientPseudonym): String
+
+    override fun <T> send(request: MtbFileRequest<T>): MtbFileSender.Response {
         try {
             return retryTemplate.execute<MtbFileSender.Response, Exception> {
-                val headers = HttpHeaders()
-                headers.contentType = MediaType.APPLICATION_JSON
-                val entityReq = HttpEntity(request.mtbFile, headers)
+                val headers = getHttpHeaders(request)
+                val entityReq = HttpEntity(request.content, headers)
                 val response = restTemplate.postForEntity(
-                    "${restTargetProperties.uri}/MTBFile",
+                    sendUrl(),
                     entityReq,
                     String::class.java
                 )
                 if (!response.statusCode.is2xxSuccessful) {
                     logger.warn("Error sending to remote system: {}", response.body)
                     return@execute MtbFileSender.Response(
-                        response.statusCode.asRequestStatus(),
+                        reportService.deserialize(response.body).asRequestStatus(),
                         "Status-Code: ${response.statusCode.value()}"
                     )
                 }
                 logger.debug("Sent file via RestMtbFileSender")
-                return@execute MtbFileSender.Response(response.statusCode.asRequestStatus(), response.body.orEmpty())
+                return@execute MtbFileSender.Response(reportService.deserialize(response.body).asRequestStatus(), response.body.orEmpty())
             }
         } catch (e: IllegalArgumentException) {
             logger.error("Not a valid URI to export to: '{}'", restTargetProperties.uri!!)
-        } catch (e: RestClientException) {
+        } catch (e: RestClientResponseException) {
             logger.info(restTargetProperties.uri!!.toString())
-            logger.error("Cannot send data to remote system", e)
+            logger.error("Request data not accepted by remote system", e)
+            return MtbFileSender.Response(reportService.deserialize(e.responseBodyAsString).asRequestStatus(), e.responseBodyAsString)
         }
         return MtbFileSender.Response(RequestStatus.ERROR, "Sonstiger Fehler bei der Übertragung")
     }
 
-    override fun send(request: MtbFileSender.DeleteRequest): MtbFileSender.Response {
+    override fun send(request: DeleteRequest): MtbFileSender.Response {
         try {
             return retryTemplate.execute<MtbFileSender.Response, Exception> {
-                val headers = HttpHeaders()
-                headers.contentType = MediaType.APPLICATION_JSON
+                val headers = getHttpHeaders(request)
                 val entityReq = HttpEntity(null, headers)
                 restTemplate.delete(
-                    "${restTargetProperties.uri}/Patient/${request.patientId}",
+                    deleteUrl(request.patientId),
                     entityReq,
                     String::class.java
                 )
@@ -94,4 +103,21 @@ class RestMtbFileSender(
         return this.restTargetProperties.uri.orEmpty()
     }
 
+    private fun getHttpHeaders(request: MtbRequest): HttpHeaders {
+        val username = restTargetProperties.username
+        val password = restTargetProperties.password
+        val headers = HttpHeaders()
+        headers.contentType = when (request) {
+            is DnpmV2MtbFileRequest -> CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON
+            else -> MediaType.APPLICATION_JSON
+        }
+
+        if (username.isNullOrBlank() || password.isNullOrBlank()) {
+            return headers
+        }
+
+        headers.setBasicAuth(username, password)
+        return headers
+    }
+
 }

src/main/kotlin/dev/dnpm/etl/processor/pseudonym/AnonymizingGenerator.kt

@@ -21,9 +21,12 @@ package dev.dnpm.etl.processor.pseudonym
 
 import org.apache.commons.codec.binary.Base32
 import org.apache.commons.codec.digest.DigestUtils
-
+import java.security.SecureRandom
 
 class AnonymizingGenerator : Generator {
+    companion object fun getSecureRandom() : SecureRandom {
+        return  SecureRandom()
+    }
 
     override fun generate(id: String): String {
         return Base32().encodeAsString(DigestUtils.sha256(id))
@@ -31,4 +34,14 @@ class AnonymizingGenerator : Generator {
             .lowercase()
     }
 
+    @OptIn(ExperimentalStdlibApi::class)
+    override fun generateGenomDeTan(id: String?): String {
+
+        val bytes = ByteArray(64 / 2)
+        getSecureRandom().nextBytes(bytes)
+
+        return bytes.joinToString("") { "%02x".format(it) }
+
+    }
+
 }

src/main/kotlin/dev/dnpm/etl/processor/pseudonym/PseudonymizeService.kt

@@ -19,6 +19,8 @@
 
 package dev.dnpm.etl.processor.pseudonym
 
+import dev.dnpm.etl.processor.PatientId
+import dev.dnpm.etl.processor.PatientPseudonym
 import dev.dnpm.etl.processor.config.PseudonymizeConfigProperties
 
 class PseudonymizeService(
@@ -26,13 +28,17 @@ class PseudonymizeService(
     private val configProperties: PseudonymizeConfigProperties
 ) {
 
-    fun patientPseudonym(patientId: String): String {
+    fun patientPseudonym(patientId: PatientId): PatientPseudonym {
         return when (generator) {
-            is GpasPseudonymGenerator -> generator.generate(patientId)
-            else -> "${configProperties.prefix}_${generator.generate(patientId)}"
+            is GpasPseudonymGenerator -> PatientPseudonym(generator.generate(patientId.value))
+            else -> PatientPseudonym("${configProperties.prefix}_${generator.generate(patientId.value)}")
         }
     }
 
+    fun genomDeTan(patientId: PatientId): String {
+        return generator.generateGenomDeTan(patientId.value)
+    }
+
     fun prefix(): String {
         return configProperties.prefix
     }

src/main/kotlin/dev/dnpm/etl/processor/pseudonym/extensions.kt

@@ -19,53 +19,96 @@
 
 package dev.dnpm.etl.processor.pseudonym
 
-import de.ukw.ccc.bwhc.dto.MtbFile
+import dev.dnpm.etl.processor.PatientId
+import dev.pcvolkmer.mv64e.mtb.ModelProjectConsent
+import dev.pcvolkmer.mv64e.mtb.Mtb
+import dev.pcvolkmer.mv64e.mtb.MvhMetadata
 import org.apache.commons.codec.digest.DigestUtils
 
 /** Replaces patient ID with generated patient pseudonym
  *
- * @param pseudonymizeService The pseudonymizeService to be used
+ * @since 0.11.0
  *
+ * @param pseudonymizeService The pseudonymizeService to be used
  * @return The MTB file containing patient pseudonymes
  */
-infix fun MtbFile.pseudonymizeWith(pseudonymizeService: PseudonymizeService) {
-    val patientPseudonym = pseudonymizeService.patientPseudonym(this.patient.id)
+infix fun Mtb.pseudonymizeWith(pseudonymizeService: PseudonymizeService) {
+    val patientPseudonym = pseudonymizeService.patientPseudonym(PatientId(this.patient.id)).value
 
-    this.episode?.patient = patientPseudonym
-    this.carePlans?.forEach { it.patient = patientPseudonym }
-    this.patient.id = patientPseudonym
-    this.claims?.forEach { it.patient = patientPseudonym }
-    this.consent?.patient = patientPseudonym
-    this.claimResponses?.forEach { it.patient = patientPseudonym }
-    this.diagnoses?.forEach { it.patient = patientPseudonym }
-    this.ecogStatus?.forEach { it.patient = patientPseudonym }
-    this.familyMemberDiagnoses?.forEach { it.patient = patientPseudonym }
-    this.geneticCounsellingRequests?.forEach { it.patient = patientPseudonym }
-    this.histologyReevaluationRequests?.forEach { it.patient = patientPseudonym }
-    this.histologyReports?.forEach {
-        it.patient = patientPseudonym
-        it.tumorMorphology?.patient = patientPseudonym
+    this.episodesOfCare?.forEach { it.patient.id = patientPseudonym }
+    this.carePlans?.forEach {
+        it.patient.id = patientPseudonym
+        it.rebiopsyRequests?.forEach { it.patient.id = patientPseudonym }
+        it.histologyReevaluationRequests?.forEach { it.patient.id = patientPseudonym }
+        it.medicationRecommendations.forEach { it.patient.id = patientPseudonym }
+        it.studyEnrollmentRecommendations?.forEach { it.patient.id = patientPseudonym }
+        it.procedureRecommendations?.forEach { it.patient.id = patientPseudonym }
+        it.geneticCounselingRecommendation.patient.id = patientPseudonym
+    }
+    this.diagnoses?.forEach { it.patient.id = patientPseudonym }
+    this.guidelineTherapies?.forEach { it.patient.id = patientPseudonym }
+    this.guidelineProcedures?.forEach { it.patient.id = patientPseudonym }
+    this.patient.id = patientPseudonym
+    this.claims?.forEach { it.patient.id = patientPseudonym }
+    this.claimResponses?.forEach { it.patient.id = patientPseudonym }
+    this.diagnoses?.forEach { it.patient.id = patientPseudonym }
+    this.familyMemberHistories?.forEach { it.patient.id = patientPseudonym }
+    this.histologyReports?.forEach {
+        it.patient.id = patientPseudonym
+        it.results.tumorMorphology?.patient?.id = patientPseudonym
+        it.results.tumorCellContent?.patient?.id = patientPseudonym
+    }
+    this.ngsReports?.forEach {
+        it.patient.id = patientPseudonym
+        it.results.simpleVariants?.forEach { it.patient.id = patientPseudonym }
+        it.results.copyNumberVariants?.forEach { it.patient.id = patientPseudonym }
+        it.results.dnaFusions?.forEach { it.patient.id = patientPseudonym }
+        it.results.rnaFusions?.forEach { it.patient.id = patientPseudonym }
+        it.results.tumorCellContent?.patient?.id = patientPseudonym
+        it.results.brcaness?.patient?.id = patientPseudonym
+        it.results.tmb?.patient?.id = patientPseudonym
+        it.results.hrdScore?.patient?.id = patientPseudonym
+    }
+    this.ihcReports?.forEach {
+        it.patient.id = patientPseudonym
+        it.results.msiMmr?.forEach { it.patient.id = patientPseudonym }
+        it.results.proteinExpression?.forEach { it.patient.id = patientPseudonym }
+    }
+    this.responses?.forEach { it.patient.id = patientPseudonym }
+    this.specimens?.forEach { it.patient.id = patientPseudonym }
+    this.priorDiagnosticReports?.forEach { it.patient.id = patientPseudonym }
+    this.performanceStatus?.forEach { it.patient.id = patientPseudonym }
+    this.systemicTherapies?.forEach {
+        it.history?.forEach {
+            it.patient.id = patientPseudonym
+        }
+    }
+    this.followUps?.forEach {
+        it.patient.id = patientPseudonym
+    }
+
+    this.msiFindings?.forEach { it -> it.patient.id = patientPseudonym }
+
+    this.metadata?.researchConsents?.forEach { it ->
+        val entry = it ?: return@forEach
+        if (entry.contains("patient")) {
+            // here we expect only a patient reference any other data like display
+            // need to be removed, since may contain unsecure data
+            entry.remove("patient")
+            entry["patient"] = mapOf("reference" to "Patient/$patientPseudonym")
+        }
     }
-    this.lastGuidelineTherapies?.forEach { it.patient = patientPseudonym }
-    this.molecularPathologyFindings?.forEach { it.patient = patientPseudonym }
-    this.molecularTherapies?.forEach { molecularTherapy -> molecularTherapy.history.forEach { it.patient = patientPseudonym } }
-    this.ngsReports?.forEach { it.patient = patientPseudonym }
-    this.previousGuidelineTherapies?.forEach { it.patient = patientPseudonym }
-    this.rebiopsyRequests?.forEach { it.patient = patientPseudonym }
-    this.recommendations?.forEach { it.patient = patientPseudonym }
-    this.responses?.forEach { it.patient = patientPseudonym }
-    this.studyInclusionRequests?.forEach { it.patient = patientPseudonym }
-    this.specimens?.forEach { it.patient = patientPseudonym }
 }
 
 /**
  * Creates new hash of content IDs with given prefix except for patient IDs
  *
- * @param pseudonymizeService The pseudonymizeService to be used
+ * @since 0.11.0
  *
+ * @param pseudonymizeService The pseudonymizeService to be used
  * @return The MTB file containing rehashed content IDs
  */
-infix fun MtbFile.anonymizeContentWith(pseudonymizeService: PseudonymizeService) {
+infix fun Mtb.anonymizeContentWith(pseudonymizeService: PseudonymizeService) {
     val prefix = pseudonymizeService.prefix()
 
     fun anonymize(id: String): String {
@@ -73,153 +116,199 @@ infix fun MtbFile.anonymizeContentWith(pseudonymizeService: PseudonymizeService)
         return "$prefix$hash"
     }
 
-    this.episode?.apply {
-        id = id?.let {
-            anonymize(it)
+    this.episodesOfCare?.forEach {
+        it?.apply { id = id?.let(::anonymize) }
+        it.diagnoses?.forEach { it ->
+            it?.id = it.id?.let(::anonymize)
         }
     }
+
     this.carePlans?.onEach { carePlan ->
         carePlan?.apply {
             id = id?.let { anonymize(it) }
-            diagnosis = diagnosis?.let { anonymize(it) }
-            geneticCounsellingRequest = geneticCounsellingRequest?.let { anonymize(it) }
-            rebiopsyRequests = rebiopsyRequests.map { it?.let { anonymize(it) } }
-            recommendations = recommendations.map { it?.let { anonymize(it) } }
-            studyInclusionRequests = studyInclusionRequests.map { it?.let { anonymize(it) } }
+
+            diagnoses?.forEach { it -> it?.id = it.id?.let(::anonymize) }
+            geneticCounselingRecommendation?.apply {
+                id = geneticCounselingRecommendation.id?.let(::anonymize)
             }
+            rebiopsyRequests?.forEach { it ->
+                it.id = it.id?.let(::anonymize)
+                it.tumorEntity?.id = it.tumorEntity?.id?.let(::anonymize)
             }
-    this.claims?.onEach { claim ->
-        claim?.apply {
-            id = id?.let { anonymize(it) }
-            therapy = therapy?.let { anonymize(it) }
+            histologyReevaluationRequests?.forEach { it ->
+                it.id = it?.id?.let(::anonymize)
+                it.specimen?.id = it.specimen?.id?.let(::anonymize)
             }
+
+            medicationRecommendations?.forEach { it ->
+                it.id = it?.id?.let(::anonymize)
+                it.supportingVariants?.forEach { it ->
+                    it.variant?.id = it.variant?.id?.let(::anonymize)
                 }
-    this.claimResponses?.onEach { claimResponse ->
-        claimResponse?.apply {
-            id = id?.let { anonymize(it) }
-            claim = claim?.let { anonymize(it) }
+                it.reason?.id = it.reason?.id?.let(::anonymize)
             }
+            reason?.id = reason?.id?.let(::anonymize)
+            studyEnrollmentRecommendations?.forEach { it ->
+                it?.reason?.id = it.reason?.id?.let(::anonymize)
             }
-    this.consent?.apply {
-        id = id?.let { anonymize(it) }
+
+            procedureRecommendations?.forEach { it ->
+
+                it.id = it?.id?.let(::anonymize)
+                it.supportingVariants?.forEach { it ->
+                    it.variant?.id = it.variant?.id?.let(::anonymize)
                 }
-    this.diagnoses?.onEach { diagnosis ->
-        diagnosis?.apply {
-            id = id?.let { anonymize(it) }
-            histologyResults = histologyResults?.map { it?.let { anonymize(it) } }
+
+                it.reason?.id = it.reason?.id?.let(::anonymize)
+
+                studyEnrollmentRecommendations?.forEach { it ->
+
+                    it.id = it?.id?.let(::anonymize)
+                    it.supportingVariants.forEach { it ->
+                        it.variant?.id = it?.variant?.id?.let(::anonymize)
                     }
-    }
-    this.ecogStatus?.onEach { ecogStatus ->
-        ecogStatus?.apply {
-            id = id?.let { anonymize(it) }
-        }
-    }
-    this.familyMemberDiagnoses?.onEach { familyMemberDiagnosis ->
-        familyMemberDiagnosis?.apply {
-            id = id?.let { anonymize(it) }
-        }
-    }
-    this.geneticCounsellingRequests?.onEach { geneticCounsellingRequest -> 
-        geneticCounsellingRequest?.apply { 
-            id = id?.let { anonymize(it) }
-        }
-    }
-    this.histologyReevaluationRequests?.onEach { histologyReevaluationRequest ->
-        histologyReevaluationRequest?.apply {
-            id = id?.let { anonymize(it) }
-            specimen = specimen?.let { anonymize(it) }
-        }
-    }
-    this.histologyReports?.onEach { histologyReport ->
-        histologyReport?.apply {
-            id = id?.let { anonymize(it) }
-            specimen = specimen?.let { anonymize(it) }
-            tumorMorphology?.apply {
-                id = id?.let { anonymize(it) }
-                specimen = specimen?.let { anonymize(it) }
-            }
-            tumorCellContent?.apply {
-                id = id?.let { anonymize(it) }
-                specimen = specimen?.let { anonymize(it) }
-            }
-        }
-    }
-    this.lastGuidelineTherapies?.onEach { lastGuidelineTherapy ->
-        lastGuidelineTherapy?.apply {
-            id = id?.let { anonymize(it) }
-            diagnosis = diagnosis?.let { anonymize(it) }
-        }
-    }
-    this.molecularPathologyFindings?.onEach { molecularPathologyFinding ->
-        molecularPathologyFinding?.apply {
-            id = id?.let { anonymize(it) }
-            specimen = specimen?.let { anonymize(it) }
-        }
-    }
-    this.molecularTherapies?.onEach { molecularTherapy ->
-        molecularTherapy?.apply {
-            history?.onEach { history ->
-                history?.apply {
-                    id = id?.let { anonymize(it) }
-                    basedOn = basedOn?.let { anonymize(it) }
+                    responses?.forEach { it ->
+                        it.id = it?.id?.let(::anonymize)
+                        it.id = it?.id?.let(::anonymize)
                     }
                 }
             }
         }
-    this.ngsReports?.onEach { ngsReport ->
-        ngsReport?.apply {
-            id = id?.let { anonymize(it) }
-            specimen = specimen?.let { anonymize(it) }
-            tumorCellContent?.apply {
-                id = id?.let { anonymize(it) }
-                specimen = specimen?.let { anonymize(it) }
     }
-            simpleVariants?.onEach { simpleVariant ->
-                simpleVariant?.apply {
-                    id = id?.let { anonymize(it) }
+
+
+    this.responses?.forEach { it ->
+
+        it?.id = it.id?.let(::anonymize)
+        it?.therapy?.id = it.therapy?.id?.let(::anonymize)
+
+    }
+
+    this.diagnoses?.forEach { it ->
+
+        it.id = it?.id?.let(::anonymize)
+        it.histology?.forEach { it -> it.id = it?.id?.let(::anonymize) }
+    }
+
+    this.ngsReports?.forEach { it ->
+        it.id = it?.id?.let(::anonymize)
+        it.results?.tumorCellContent?.id = it.results.tumorCellContent?.id?.let(::anonymize)
+        it.results?.tumorCellContent?.specimen?.id =
+            it.results?.tumorCellContent?.specimen?.id?.let(::anonymize)
+        it.results?.rnaFusions?.forEach { it ->
+            it?.id = it.id?.let(::anonymize)
+        }
+        it.results?.simpleVariants?.forEach { it ->
+            it?.id = it.id?.let(::anonymize)
+            it?.transcriptId?.value = it.transcriptId?.value?.let(::anonymize)
+        }
+        it.results?.tmb?.id = it.results?.tmb?.id?.let(::anonymize)
+        it.results?.tmb?.specimen?.id = it.results?.tmb?.specimen?.id?.let(::anonymize)
+
+        it.results?.brcaness?.id = it.results?.brcaness?.id?.let(::anonymize)
+        it.results?.brcaness?.specimen?.id = it.results?.brcaness?.specimen?.id?.let(::anonymize)
+        it.results?.copyNumberVariants?.forEach { it -> it?.id = it.id?.let(::anonymize) }
+        it.results?.hrdScore?.id = it.results?.hrdScore?.id?.let(::anonymize)
+        it.results?.hrdScore?.specimen?.id = it.results?.hrdScore?.specimen?.id?.let(::anonymize)
+        it.results?.rnaSeqs?.forEach { it -> it?.id = it.id?.let(::anonymize) }
+        it.results?.dnaFusions?.forEach { it -> it?.id = it.id?.let(::anonymize) }
+        it.specimen?.id = it?.specimen?.id?.let(::anonymize)
+
+    }
+
+    this.histologyReports?.forEach { it ->
+        it.id = it?.id?.let(::anonymize)
+        it.results?.tumorCellContent?.id = it.results?.tumorCellContent?.id?.let(::anonymize)
+        it.results?.tumorCellContent?.specimen?.id =
+            it.results?.tumorCellContent?.specimen?.id?.let(::anonymize)
+
+        it.results?.tumorMorphology?.id = it.results?.tumorMorphology?.id?.let(::anonymize)
+        it.results?.tumorMorphology?.specimen?.id =
+            it.results?.tumorMorphology?.specimen?.id?.let(::anonymize)
+        it.specimen?.id = it.specimen?.id?.let(::anonymize)
+
+    }
+    this.claimResponses?.forEach { it ->
+        it.id = it?.id?.let(::anonymize)
+        it.claim?.id = it.claim?.id?.let(::anonymize)
+    }
+    this.claims?.forEach { it ->
+
+        it.id = it?.id?.let(::anonymize)
+        it.recommendation?.id = it.recommendation?.id?.let(::anonymize)
+
+    }
+    this.familyMemberHistories?.forEach { it -> it.id = it?.id?.let(::anonymize) }
+    this.guidelineProcedures?.forEach { it ->
+        it.id = it?.id?.let(::anonymize)
+        it.reason?.id = it.reason?.id?.let(::anonymize)
+        it.basedOn?.id = it.basedOn?.id?.let(::anonymize)
+
+    }
+
+    this.guidelineTherapies?.forEach { it ->
+        it.id = it?.id?.let(::anonymize)
+        it.reason?.id = it.reason?.id?.let(::anonymize)
+        it.basedOn?.id = it.basedOn?.id?.let(::anonymize)
+    }
+    this.ihcReports?.forEach { it ->
+        it.id = it?.id?.let(::anonymize)
+        it.specimen?.id = it.specimen?.id?.let(::anonymize)
+        it.results.proteinExpression.forEach { it -> it?.id = it.id.let(::anonymize) }
+    }
+
+    this.msiFindings?.forEach { it ->
+
+        it.id = it?.id?.let(::anonymize)
+        it.specimen?.id = it.specimen?.id?.let(::anonymize)
+    }
+
+    this.performanceStatus?.forEach { it -> it.id = it?.id?.let(::anonymize) }
+
+    this.priorDiagnosticReports?.forEach { it ->
+
+        it.id = it?.id?.let(::anonymize)
+        it.specimen?.id = it.specimen?.id?.let(::anonymize)
+    }
+
+    this.specimens?.forEach { it ->
+
+        it.id = it?.id?.let(::anonymize)
+        it.diagnosis?.id = it.diagnosis?.id?.let(::anonymize)
+
+    }
+
+    this.systemicTherapies?.forEach { it ->
+
+        it.history?.forEach { it ->
+
+            it.id = it?.id?.let(::anonymize)
+            it.reason?.id = it.reason?.id?.let(::anonymize)
+            it.basedOn?.id = it.basedOn?.id?.let(::anonymize)
+        }
+
     }
 }
+
+fun Mtb.ensureMetaDataIsInitialized() {
+    // init metadata if necessary
+    if (this.metadata == null) {
+        val mvhMetadata = MvhMetadata.builder().build()
+        this.metadata = mvhMetadata
+    }
+    if (this.metadata.researchConsents == null) {
+        this.metadata.researchConsents = mutableListOf()
+    }
+    if (this.metadata.modelProjectConsent == null) {
+        this.metadata.modelProjectConsent = ModelProjectConsent()
+        this.metadata.modelProjectConsent.provisions = mutableListOf()
+    } else if (this.metadata.modelProjectConsent.provisions != null) {
+        // make sure list can be changed
+        this.metadata.modelProjectConsent.provisions =
+            this.metadata.modelProjectConsent.provisions.toMutableList()
     }
 }
-    this.previousGuidelineTherapies?.onEach { previousGuidelineTherapy ->
-        previousGuidelineTherapy?.apply {
-            id = id?.let { anonymize(it) }
-            diagnosis = diagnosis?.let { anonymize(it) }
-            medication.forEach { medication ->
-                medication?.apply {
-                    id = id?.let { anonymize(it) }
-                }
-            }
-        }
-    }
-    this.rebiopsyRequests?.onEach { rebiopsyRequest ->
-        rebiopsyRequest?.apply {
-            id = id?.let { anonymize(it) }
-            specimen = specimen?.let { anonymize(it) }
-        }
-    }
-    this.recommendations?.onEach { recommendation ->
-        recommendation?.apply {
-            id = id?.let { anonymize(it) }
-            diagnosis = diagnosis?.let { anonymize(it) }
-            ngsReport = ngsReport?.let { anonymize(it) }
-        }
-    }
-    this.responses?.onEach { response ->
-        response?.apply {
-            id = id?.let { anonymize(it) }
-            therapy = therapy?.let { anonymize(it) }
-        }
-    }
-    this.studyInclusionRequests?.onEach { studyInclusionRequest ->
-        studyInclusionRequest?.apply {
-            id = id?.let { anonymize(it) }
-            reason = reason?.let { anonymize(it) }
-        }
-    }
-    this.specimens?.onEach { specimen ->
-        specimen?.apply {
-            id = id?.let { anonymize(it) }
-        }
-    }
+
+infix fun Mtb.addGenomDeTan(pseudonymizeService: PseudonymizeService) {
+    this.metadata.transferTan = pseudonymizeService.genomDeTan(PatientId(this.patient.id))
 }

src/main/kotlin/dev/dnpm/etl/processor/security/TokenService.kt

@@ -17,7 +17,7 @@
  * along with this program.  If not, see <https://www.gnu.org/licenses/>.
  */
 
-package dev.dnpm.etl.processor.services
+package dev.dnpm.etl.processor.security
 
 import jakarta.annotation.PostConstruct
 import org.springframework.data.annotation.Id

src/main/kotlin/dev/dnpm/etl/processor/security/UserRoleService.kt

@@ -17,11 +17,8 @@
  * along with this program.  If not, see <https://www.gnu.org/licenses/>.
  */
 
-package dev.dnpm.etl.processor.services
+package dev.dnpm.etl.processor.security
 
-import dev.dnpm.etl.processor.security.Role
-import dev.dnpm.etl.processor.security.UserRole
-import dev.dnpm.etl.processor.security.UserRoleRepository
 import org.springframework.data.repository.findByIdOrNull
 import org.springframework.security.core.session.SessionRegistry
 import org.springframework.security.oauth2.core.oidc.user.OidcUser

src/main/kotlin/dev/dnpm/etl/processor/services/ConsentProcessor.kt

@@ -0,0 +1,273 @@
+package dev.dnpm.etl.processor.services
+
+import ca.uhn.fhir.context.FhirContext
+import com.fasterxml.jackson.core.JsonProcessingException
+import com.fasterxml.jackson.core.type.TypeReference
+import com.fasterxml.jackson.databind.ObjectMapper
+import dev.dnpm.etl.processor.config.AppConfigProperties
+import dev.dnpm.etl.processor.config.GIcsConfigProperties
+import dev.dnpm.etl.processor.consent.ConsentDomain
+import dev.dnpm.etl.processor.consent.IConsentService
+import dev.dnpm.etl.processor.consent.MtbFileConsentService
+import dev.dnpm.etl.processor.pseudonym.ensureMetaDataIsInitialized
+import dev.pcvolkmer.mv64e.mtb.*
+import org.apache.commons.lang3.NotImplementedException
+import org.hl7.fhir.r4.model.*
+import org.hl7.fhir.r4.model.Bundle.BundleEntryComponent
+import org.hl7.fhir.r4.model.Coding
+import org.hl7.fhir.r4.model.Consent.ConsentState
+import org.hl7.fhir.r4.model.Consent.ProvisionComponent
+import org.slf4j.Logger
+import org.slf4j.LoggerFactory
+import org.springframework.stereotype.Service
+import java.io.IOException
+import java.time.Clock
+import java.time.Instant
+import java.util.*
+
+@Service
+class ConsentProcessor(
+    private val appConfigProperties: AppConfigProperties,
+    private val gIcsConfigProperties: GIcsConfigProperties,
+    private val objectMapper: ObjectMapper,
+    private val fhirContext: FhirContext,
+    private val consentService: IConsentService
+) {
+    private var logger: Logger = LoggerFactory.getLogger("ConsentProcessor")
+
+    /**
+     * In case an instance of {@link  ICheckConsent} is active, consent will be embedded and checked.
+     *
+     * Logic:
+     *  * <c>true</c> IF consent check is disabled.
+     *  * <c>true</c> IF broad consent (BC) has been given.
+     *  * <c>true</c> BC has been asked AND declined but genomDe consent has been consented.
+     *  * ELSE <c>false</c> is returned.
+     *
+     * @param mtbFile File v2 (will be enriched with consent data)
+     * @return true if consent is given
+     *
+     */
+    fun consentGatedCheckAndTryEmbedding(mtbFile: Mtb): Boolean {
+        if (consentService is MtbFileConsentService) {
+            // consent check is disabled
+            return true
+        }
+
+        mtbFile.ensureMetaDataIsInitialized()
+
+        val personIdentifierValue = mtbFile.patient.id
+        val requestDate = Date.from(Instant.now(Clock.systemUTC()))
+
+        // 1. Broad consent Entry exists?
+        // 1.1. -> yes and research consent is given -> send mtb file
+        // 1.2. -> no -> return status error - consent has not been asked
+        // 2. ->  Broad consent found but rejected -> is GenomDe consent provision 'sequencing' given?
+        // 2.1 -> yes -> send mtb file
+        // 2.2 -> no ->  warn/info no consent given
+
+        /*
+         * broad consent
+         */
+        val broadConsent = consentService.getConsent(
+            personIdentifierValue, requestDate, ConsentDomain.BROAD_CONSENT
+        )
+        val broadConsentHasBeenAsked = broadConsent.entry.isNotEmpty()
+
+        // fast exit - if patient has not been asked, we can skip and exit
+        if (!broadConsentHasBeenAsked) return false
+
+        val genomeDeConsent = consentService.getConsent(
+            personIdentifierValue, requestDate, ConsentDomain.MODELLVORHABEN_64E
+        )
+
+        addGenomeDbProvisions(mtbFile, genomeDeConsent)
+
+        if (genomeDeConsent.entry.isNotEmpty()) setGenomDeSubmissionType(mtbFile)
+
+        embedBroadConsentResources(mtbFile, broadConsent)
+
+        val broadConsentStatus = getProvisionTypeByPolicyCode(
+            broadConsent, requestDate, ConsentDomain.BROAD_CONSENT
+        )
+
+        val genomDeSequencingStatus = getProvisionTypeByPolicyCode(
+            genomeDeConsent, requestDate, ConsentDomain.MODELLVORHABEN_64E
+        )
+
+        if (Consent.ConsentProvisionType.NULL == broadConsentStatus) {
+            // bc not asked
+            return false
+        }
+        if (Consent.ConsentProvisionType.PERMIT == broadConsentStatus || Consent.ConsentProvisionType.PERMIT == genomDeSequencingStatus) return true
+
+        return false
+    }
+
+    fun embedBroadConsentResources(mtbFile: Mtb, broadConsent: Bundle) {
+        for (entry in broadConsent.entry) {
+            val resource = entry.resource
+            if (resource is Consent) {
+                // since jackson convertValue does not work here,
+                // we need another step to back to string, before we convert to object map
+                val asJsonString = fhirContext.newJsonParser().encodeResourceToString(resource)
+                try {
+                    val mapOfJson: HashMap<String?, Any?>? =
+                        objectMapper.readValue<HashMap<String?, Any?>?>(
+                            asJsonString, object : TypeReference<HashMap<String?, Any?>?>() {})
+                    mtbFile.metadata.researchConsents.add(mapOfJson)
+                } catch (e: JsonProcessingException) {
+                    throw RuntimeException(e)
+                }
+            }
+        }
+    }
+
+    fun addGenomeDbProvisions(mtbFile: Mtb, consentGnomeDe: Bundle) {
+        for (entry in consentGnomeDe.entry) {
+            val resource = entry.resource
+            if (resource !is Consent) {
+                continue
+            }
+
+            // We expect only one provision in collection, therefore get first or none
+            val provisions = resource.provision.provision
+            if (provisions.isEmpty()) {
+                continue
+            }
+
+            val provisionComponent: ProvisionComponent = provisions.first()
+
+            var provisionCode: String? = null
+            if (provisionComponent.code != null && provisionComponent.code.isNotEmpty()) {
+                val codableConcept: CodeableConcept = provisionComponent.code.first()
+                if (codableConcept.coding != null && codableConcept.coding.isNotEmpty()) {
+                    provisionCode = codableConcept.coding.first().code
+                }
+            }
+
+            if (provisionCode != null) {
+                try {
+                    val modelProjectConsentPurpose =
+                        ModelProjectConsentPurpose.forValue(provisionCode)
+
+                    if (ModelProjectConsentPurpose.SEQUENCING == modelProjectConsentPurpose) {
+                        // CONVENTION: wrapping date is date of SEQUENCING consent
+                        mtbFile.metadata.modelProjectConsent.date = resource.dateTime
+                    }
+
+                    val provision = Provision.builder()
+                        .type(ConsentProvision.valueOf(provisionComponent.type.name))
+                        .date(provisionComponent.period.start)
+                        .purpose(modelProjectConsentPurpose).build()
+
+                    mtbFile.metadata.modelProjectConsent.provisions.add(provision)
+                } catch (ioe: IOException) {
+                    logger.error(
+                        "Provision code '$provisionCode' is unknown and cannot be mapped.",
+                        ioe.toString()
+                    )
+                }
+            }
+
+            if (mtbFile.metadata.modelProjectConsent.provisions.isNotEmpty()) {
+                mtbFile.metadata.modelProjectConsent.version =
+                    gIcsConfigProperties.genomeDeConsentVersion
+            }
+        }
+    }
+
+    private fun setGenomDeSubmissionType(mtbFile: Mtb) {
+        if (appConfigProperties.genomDeTestSubmission) {
+            mtbFile.metadata.type = MvhSubmissionType.TEST
+            logger.info("genomeDe submission mit TEST")
+        } else {
+            mtbFile.metadata.type = when (mtbFile.metadata.type) {
+                null -> MvhSubmissionType.INITIAL
+                else -> mtbFile.metadata.type
+            }
+        }
+    }
+
+    /**
+     * @param consentBundle consent resource
+     * @param requestDate   date which must be within validation period of provision
+     * @return type of provision, will be [org.hl7.fhir.r4.model.Consent.ConsentProvisionType.NULL] if none is found.
+     */
+    fun getProvisionTypeByPolicyCode(
+        consentBundle: Bundle, requestDate: Date?, consentDomain: ConsentDomain
+    ): Consent.ConsentProvisionType {
+        val code: String?
+        val system: String?
+        if (ConsentDomain.BROAD_CONSENT == consentDomain) {
+            code = gIcsConfigProperties.broadConsentPolicyCode
+            system = gIcsConfigProperties.broadConsentPolicySystem
+        } else if (ConsentDomain.MODELLVORHABEN_64E == consentDomain) {
+            code = gIcsConfigProperties.genomeDePolicyCode
+            system = gIcsConfigProperties.genomeDePolicySystem
+        } else {
+            throw NotImplementedException("unknown consent domain " + consentDomain.name)
+        }
+
+        val provisionTypeByPolicyCode = getProvisionTypeByPolicyCode(
+            consentBundle, code, system, requestDate
+        )
+        return provisionTypeByPolicyCode
+    }
+
+    /**
+     * @param consentBundle            consent resource
+     * @param targetCode   policyRule and provision code value
+     * @param targetSystem policyRule and provision system value
+     * @param requestDate              date which must be within validation period of provision
+     * @return type of provision, will be [org.hl7.fhir.r4.model.Consent.ConsentProvisionType.NULL] if none is found.
+     */
+    fun getProvisionTypeByPolicyCode(
+        consentBundle: Bundle, targetCode: String?, targetSystem: String?, requestDate: Date?
+    ): Consent.ConsentProvisionType {
+        val entriesOfInterest = consentBundle.entry.filter { entry ->
+            val isConsentResource =
+                entry.resource.isResource && entry.resource.resourceType == ResourceType.Consent
+            val consentIsActive = (entry.resource as Consent).status == ConsentState.ACTIVE
+
+            isConsentResource && consentIsActive && checkCoding(
+                targetCode, targetSystem, (entry.resource as Consent).policyRule.coding
+            ) && isRequestDateInRange(requestDate, (entry.resource as Consent).provision.period)
+        }.map { entry: BundleEntryComponent ->
+            val consent = (entry.getResource() as Consent)
+            consent.provision.provision.filter { subProvision ->
+                isRequestDateInRange(requestDate, subProvision.period)
+                // search coding entries of current provision for code and system
+                subProvision.code.map { c -> c.coding }.flatten().firstOrNull { code ->
+                    targetCode.equals(code.code) && targetSystem.equals(code.system)
+                } != null
+            }.map { subProvision ->
+                subProvision
+            }
+        }.flatten()
+
+        if (entriesOfInterest.isNotEmpty()) {
+            return entriesOfInterest.first().type
+        }
+        return Consent.ConsentProvisionType.NULL
+    }
+
+    fun checkCoding(
+        researchAllowedPolicyOid: String?,
+        researchAllowedPolicySystem: String?,
+        policyRules: Collection<Coding>
+    ): Boolean {
+        return policyRules.find { code ->
+            researchAllowedPolicySystem.equals(code.getSystem()) && (researchAllowedPolicyOid.equals(
+                code.getCode()
+            ))
+        } != null
+    }
+
+    fun isRequestDateInRange(requestDate: Date?, provPeriod: Period): Boolean {
+        val isRequestDateAfterOrEqualStart = provPeriod.start.compareTo(requestDate)
+        val isRequestDateBeforeOrEqualEnd = provPeriod.end.compareTo(requestDate)
+        return isRequestDateAfterOrEqualStart <= 0 && isRequestDateBeforeOrEqualEnd >= 0
+    }
+
+}

src/main/kotlin/dev/dnpm/etl/processor/services/RequestProcessor.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2023  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -20,18 +20,28 @@
 package dev.dnpm.etl.processor.services
 
 import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.MtbFile
+import dev.dnpm.etl.processor.*
 import dev.dnpm.etl.processor.config.AppConfigProperties
+import dev.dnpm.etl.processor.consent.TtpConsentStatus
 import dev.dnpm.etl.processor.monitoring.Report
 import dev.dnpm.etl.processor.monitoring.Request
 import dev.dnpm.etl.processor.monitoring.RequestStatus
 import dev.dnpm.etl.processor.monitoring.RequestType
+import dev.dnpm.etl.processor.output.DeleteRequest
+import dev.dnpm.etl.processor.output.DnpmV2MtbFileRequest
+import dev.dnpm.etl.processor.output.MtbFileRequest
 import dev.dnpm.etl.processor.output.MtbFileSender
 import dev.dnpm.etl.processor.pseudonym.PseudonymizeService
+import dev.dnpm.etl.processor.pseudonym.addGenomDeTan
 import dev.dnpm.etl.processor.pseudonym.anonymizeContentWith
 import dev.dnpm.etl.processor.pseudonym.pseudonymizeWith
+import dev.pcvolkmer.mv64e.mtb.ConsentProvision
+import dev.pcvolkmer.mv64e.mtb.ModelProjectConsentPurpose
+import dev.pcvolkmer.mv64e.mtb.Mtb
 import org.apache.commons.codec.binary.Base32
 import org.apache.commons.codec.digest.DigestUtils
+import org.slf4j.Logger
+import org.slf4j.LoggerFactory
 import org.springframework.context.ApplicationEventPublisher
 import org.springframework.stereotype.Service
 import java.time.Instant
@@ -45,38 +55,63 @@ class RequestProcessor(
     private val requestService: RequestService,
     private val objectMapper: ObjectMapper,
     private val applicationEventPublisher: ApplicationEventPublisher,
-    private val appConfigProperties: AppConfigProperties
+    private val appConfigProperties: AppConfigProperties,
+    private val consentProcessor: ConsentProcessor?
 ) {
 
-    fun processMtbFile(mtbFile: MtbFile) {
-        processMtbFile(mtbFile, UUID.randomUUID().toString())
+    private var logger: Logger = LoggerFactory.getLogger("RequestProcessor")
+
+    fun processMtbFile(mtbFile: Mtb) {
+        processMtbFile(mtbFile, randomRequestId())
     }
 
-    fun processMtbFile(mtbFile: MtbFile, requestId: String) {
-        val pid = mtbFile.patient.id
 
+    fun processMtbFile(mtbFile: Mtb, requestId: RequestId) {
+        val pid = PatientId(extractPatientIdentifier(mtbFile))
+
+        val isConsentOk =
+            consentProcessor != null && consentProcessor.consentGatedCheckAndTryEmbedding(mtbFile) || consentProcessor == null
+        if (isConsentOk) {
+            if (isGenomDeConsented(mtbFile)) {
+                mtbFile addGenomDeTan pseudonymizeService
+            }
             mtbFile pseudonymizeWith pseudonymizeService
             mtbFile anonymizeContentWith pseudonymizeService
-
-        val request = MtbFileSender.MtbFileRequest(requestId, transformationService.transform(mtbFile))
-
-        requestService.save(
-            Request(
-                uuid = requestId,
-                patientId = request.mtbFile.patient.id,
-                pid = pid,
-                fingerprint = fingerprint(request.mtbFile),
-                status = RequestStatus.UNKNOWN,
-                type = RequestType.MTB_FILE
-            )
-        )
-
-        if (appConfigProperties.duplicationDetection && isDuplication(mtbFile)) {
+            val request = DnpmV2MtbFileRequest(requestId, transformationService.transform(mtbFile))
+            saveAndSend(request, pid)
+        } else {
+            logger.warn("consent check failed file will not be processed further!")
             applicationEventPublisher.publishEvent(
                 ResponseEvent(
-                    requestId,
-                    Instant.now(),
-                    RequestStatus.DUPLICATION
+                    requestId, Instant.now(), RequestStatus.NO_CONSENT
+                )
+            )
+        }
+    }
+
+    private fun isGenomDeConsented(mtbFile: Mtb): Boolean {
+        val isModelProjectConsented = mtbFile.metadata?.modelProjectConsent?.provisions?.any { p ->
+            p.purpose == ModelProjectConsentPurpose.SEQUENCING && p.type == ConsentProvision.PERMIT
+        } == true
+        return isModelProjectConsented
+    }
+
+    private fun <T> saveAndSend(request: MtbFileRequest<T>, pid: PatientId) {
+        requestService.save(
+            Request(
+                request.requestId,
+                request.patientPseudonym(),
+                pid,
+                fingerprint(request),
+                RequestType.MTB_FILE,
+                RequestStatus.UNKNOWN
+            )
+        )
+
+        if (appConfigProperties.duplicationDetection && isDuplication(request)) {
+            applicationEventPublisher.publishEvent(
+                ResponseEvent(
+                    request.requestId, Instant.now(), RequestStatus.DUPLICATION
                 )
             )
             return
@@ -86,67 +121,78 @@ class RequestProcessor(
 
         applicationEventPublisher.publishEvent(
             ResponseEvent(
-                requestId,
+                request.requestId,
                 Instant.now(),
                 responseStatus.status,
                 when (responseStatus.status) {
-                    RequestStatus.WARNING -> Optional.of(responseStatus.body)
+                    RequestStatus.ERROR, RequestStatus.WARNING -> Optional.of(responseStatus.body)
                     else -> Optional.empty()
                 }
             )
         )
     }
 
-    private fun isDuplication(pseudonymizedMtbFile: MtbFile): Boolean {
+    private fun <T> isDuplication(pseudonymizedMtbFileRequest: MtbFileRequest<T>): Boolean {
+        val patientPseudonym = when (pseudonymizedMtbFileRequest) {
+            is DnpmV2MtbFileRequest -> PatientPseudonym(pseudonymizedMtbFileRequest.content.patient.id)
+        }
+
         val lastMtbFileRequestForPatient =
-            requestService.lastMtbFileRequestForPatientPseudonym(pseudonymizedMtbFile.patient.id)
-        val isLastRequestDeletion = requestService.isLastRequestWithKnownStatusDeletion(pseudonymizedMtbFile.patient.id)
+            requestService.lastMtbFileRequestForPatientPseudonym(patientPseudonym)
+        val isLastRequestDeletion =
+            requestService.isLastRequestWithKnownStatusDeletion(patientPseudonym)
 
-        return null != lastMtbFileRequestForPatient
-                && !isLastRequestDeletion
-                && lastMtbFileRequestForPatient.fingerprint == fingerprint(pseudonymizedMtbFile)
+        return null != lastMtbFileRequestForPatient && !isLastRequestDeletion && lastMtbFileRequestForPatient.fingerprint == fingerprint(
+            pseudonymizedMtbFileRequest
+        )
     }
 
-    fun processDeletion(patientId: String) {
-        processDeletion(patientId, UUID.randomUUID().toString())
+    fun processDeletion(patientId: PatientId, isConsented: TtpConsentStatus) {
+        processDeletion(patientId, randomRequestId(), isConsented)
     }
 
-    fun processDeletion(patientId: String, requestId: String) {
+    fun processDeletion(patientId: PatientId, requestId: RequestId, isConsented: TtpConsentStatus) {
         try {
             val patientPseudonym = pseudonymizeService.patientPseudonym(patientId)
 
+            val requestStatus: RequestStatus = when (isConsented) {
+                TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED, TtpConsentStatus.BROAD_CONSENT_MISSING, TtpConsentStatus.BROAD_CONSENT_REJECTED -> RequestStatus.NO_CONSENT
+                TtpConsentStatus.FAILED_TO_ASK -> RequestStatus.ERROR
+                TtpConsentStatus.BROAD_CONSENT_GIVEN, TtpConsentStatus.UNKNOWN_CHECK_FILE -> RequestStatus.UNKNOWN
+                TtpConsentStatus.GENOM_DE_CONSENT_SEQUENCING_PERMIT, TtpConsentStatus.GENOM_DE_CONSENT_MISSING, TtpConsentStatus.GENOM_DE_SEQUENCING_REJECTED -> {
+                    throw RuntimeException("processDelete should never deal with '" + isConsented.name + "' consent status. This is a bug and need to be fixed!")
+                }
+            }
+
             requestService.save(
                 Request(
-                    uuid = requestId,
-                    patientId = patientPseudonym,
-                    pid = patientId,
-                    fingerprint = fingerprint(patientPseudonym),
-                    status = RequestStatus.UNKNOWN,
-                    type = RequestType.DELETE
+                    requestId,
+                    patientPseudonym,
+                    patientId,
+                    fingerprint(patientPseudonym.value),
+                    RequestType.DELETE,
+                    requestStatus
                 )
             )
 
-            val responseStatus = sender.send(MtbFileSender.DeleteRequest(requestId, patientPseudonym))
+            val responseStatus = sender.send(DeleteRequest(requestId, patientPseudonym))
 
             applicationEventPublisher.publishEvent(
                 ResponseEvent(
-                    requestId,
-                    Instant.now(),
-                    responseStatus.status,
-                    when (responseStatus.status) {
+                    requestId, Instant.now(), responseStatus.status, when (responseStatus.status) {
                         RequestStatus.WARNING, RequestStatus.ERROR -> Optional.of(responseStatus.body)
                         else -> Optional.empty()
                     }
                 )
             )
 
-        } catch (e: Exception) {
+        } catch (_: Exception) {
             requestService.save(
                 Request(
                     uuid = requestId,
-                    patientId = "???",
+                    patientPseudonym = emptyPatientPseudonym(),
                     pid = patientId,
-                    fingerprint = "",
+                    fingerprint = Fingerprint.empty(),
                     status = RequestStatus.ERROR,
                     type = RequestType.DELETE,
                     report = Report("Fehler bei der Pseudonymisierung")
@@ -155,14 +201,18 @@ class RequestProcessor(
         }
     }
 
-    private fun fingerprint(mtbFile: MtbFile): String {
-        return fingerprint(objectMapper.writeValueAsString(mtbFile))
+    private fun <T> fingerprint(request: MtbFileRequest<T>): Fingerprint {
+        return when (request) {
+            is DnpmV2MtbFileRequest -> fingerprint(objectMapper.writeValueAsString(request.content))
+        }
     }
 
-    private fun fingerprint(s: String): String {
-        return Base32().encodeAsString(DigestUtils.sha256(s))
-            .replace("=", "")
-            .lowercase()
+    private fun fingerprint(s: String): Fingerprint {
+        return Fingerprint(
+            Base32().encodeAsString(DigestUtils.sha256(s)).replace("=", "").lowercase()
+        )
     }
 
 }
+
+private fun extractPatientIdentifier(mtbFile: Mtb): String = mtbFile.patient.id

src/main/kotlin/dev/dnpm/etl/processor/services/RequestService.kt

@@ -19,11 +19,13 @@
 
 package dev.dnpm.etl.processor.services
 
-import dev.dnpm.etl.processor.monitoring.Request
-import dev.dnpm.etl.processor.monitoring.RequestRepository
-import dev.dnpm.etl.processor.monitoring.RequestStatus
-import dev.dnpm.etl.processor.monitoring.RequestType
+import dev.dnpm.etl.processor.PatientPseudonym
+import dev.dnpm.etl.processor.RequestId
+import dev.dnpm.etl.processor.monitoring.*
+import org.springframework.data.domain.Page
+import org.springframework.data.domain.Pageable
 import org.springframework.stereotype.Service
+import java.util.*
 
 @Service
 class RequestService(
@@ -32,15 +34,32 @@ class RequestService(
 
     fun save(request: Request) = requestRepository.save(request)
 
-    fun allRequestsByPatientPseudonym(patientPseudonym: String) = requestRepository
-        .findAllByPatientIdOrderByProcessedAtDesc(patientPseudonym)
+    fun findAll(): Iterable<Request> = requestRepository.findAll()
 
-    fun lastMtbFileRequestForPatientPseudonym(patientPseudonym: String) =
+    fun findAll(pageable: Pageable): Page<Request> = requestRepository.findAll(pageable)
+
+    fun findByUuid(uuid: RequestId): Optional<Request> =
+        requestRepository.findByUuidEquals(uuid)
+
+    fun findRequestByPatientId(patientPseudonym: PatientPseudonym, pageable: Pageable): Page<Request> = requestRepository.findRequestByPatientPseudonym(patientPseudonym, pageable)
+
+    fun allRequestsByPatientPseudonym(patientPseudonym: PatientPseudonym) = requestRepository
+        .findAllByPatientPseudonymOrderByProcessedAtDesc(patientPseudonym)
+
+    fun lastMtbFileRequestForPatientPseudonym(patientPseudonym: PatientPseudonym) =
         Companion.lastMtbFileRequestForPatientPseudonym(allRequestsByPatientPseudonym(patientPseudonym))
 
-    fun isLastRequestWithKnownStatusDeletion(patientPseudonym: String) =
+    fun isLastRequestWithKnownStatusDeletion(patientPseudonym: PatientPseudonym) =
         Companion.isLastRequestWithKnownStatusDeletion(allRequestsByPatientPseudonym(patientPseudonym))
 
+    fun countStates(): Iterable<CountedState> = requestRepository.countStates()
+
+    fun countDeleteStates(): Iterable<CountedState> = requestRepository.countDeleteStates()
+
+    fun findPatientUniqueStates(): List<CountedState> = requestRepository.findPatientUniqueStates()
+
+    fun findPatientUniqueDeleteStates(): List<CountedState> = requestRepository.findPatientUniqueDeleteStates()
+
     companion object {
 
         fun lastMtbFileRequestForPatientPseudonym(allRequests: List<Request>) = allRequests

src/main/kotlin/dev/dnpm/etl/processor/services/ResponseProcessor.kt

@@ -19,8 +19,8 @@
 
 package dev.dnpm.etl.processor.services
 
+import dev.dnpm.etl.processor.RequestId
 import dev.dnpm.etl.processor.monitoring.Report
-import dev.dnpm.etl.processor.monitoring.RequestRepository
 import dev.dnpm.etl.processor.monitoring.RequestStatus
 import org.slf4j.LoggerFactory
 import org.springframework.context.event.EventListener
@@ -31,7 +31,7 @@ import java.util.*
 
 @Service
 class ResponseProcessor(
-    private val requestRepository: RequestRepository,
+    private val requestService: RequestService,
     private val statisticsUpdateProducer: Sinks.Many<Any>
 ) {
 
@@ -39,7 +39,7 @@ class ResponseProcessor(
 
     @EventListener(classes = [ResponseEvent::class])
     fun handleResponseEvent(event: ResponseEvent) {
-        requestRepository.findByUuidEquals(event.requestUuid).ifPresentOrElse({
+        requestService.findByUuid(event.requestUuid).ifPresentOrElse({
             it.processedAt = event.timestamp
             it.status = event.status
 
@@ -70,13 +70,19 @@ class ResponseProcessor(
                     )
                 }
 
+                RequestStatus.NO_CONSENT -> {
+                    it.report = Report(
+                        "Einwilligung Status fehlt, widerrufen oder ungeklärt."
+                    )
+                }
+
                 else -> {
                     logger.error("Cannot process response: Unknown response!")
                     return@ifPresentOrElse
                 }
             }
 
-            requestRepository.save(it)
+            requestService.save(it)
 
             statisticsUpdateProducer.emitNext("", Sinks.EmitFailureHandler.FAIL_FAST)
         }, {
@@ -87,7 +93,7 @@ class ResponseProcessor(
 }
 
 data class ResponseEvent(
-    val requestUuid: String,
+    val requestUuid: RequestId,
     val timestamp: Instant,
     val status: RequestStatus,
     val body: Optional<String> = Optional.empty()

src/main/kotlin/dev/dnpm/etl/processor/services/TransformationService.kt

@@ -22,11 +22,17 @@ package dev.dnpm.etl.processor.services
 import com.fasterxml.jackson.databind.ObjectMapper
 import com.jayway.jsonpath.JsonPath
 import com.jayway.jsonpath.PathNotFoundException
-import de.ukw.ccc.bwhc.dto.MtbFile
+import dev.pcvolkmer.mv64e.mtb.Mtb
 
 class TransformationService(private val objectMapper: ObjectMapper, private val transformations: List<Transformation>) {
-    fun transform(mtbFile: MtbFile): MtbFile {
-        var json = objectMapper.writeValueAsString(mtbFile)
+
+    fun transform(mtbFile: Mtb): Mtb {
+        val json = transform(objectMapper.writeValueAsString(mtbFile))
+        return objectMapper.readValue(json, Mtb::class.java)
+    }
+
+    private fun transform(content: String): String {
+        var json = content
 
         transformations.forEach { transformation ->
             val jsonPath = JsonPath.parse(json)
@@ -48,7 +54,7 @@ class TransformationService(private val objectMapper: ObjectMapper, private val
             json = jsonPath.jsonString()
         }
 
-        return objectMapper.readValue(json, MtbFile::class.java)
+        return json
     }
 
     fun getTransformations(): List<Transformation> {

src/main/kotlin/dev/dnpm/etl/processor/services/kafka/KafkaResponseProcessor.kt

@@ -22,6 +22,7 @@ package dev.dnpm.etl.processor.services.kafka
 import com.fasterxml.jackson.annotation.JsonAlias
 import com.fasterxml.jackson.annotation.JsonProperty
 import com.fasterxml.jackson.databind.ObjectMapper
+import dev.dnpm.etl.processor.RequestId
 import dev.dnpm.etl.processor.monitoring.RequestStatus
 import dev.dnpm.etl.processor.output.asRequestStatus
 import dev.dnpm.etl.processor.services.ResponseEvent
@@ -47,7 +48,7 @@ class KafkaResponseProcessor(
             Optional.empty()
         }.ifPresentOrElse({ responseBody ->
             val event = ResponseEvent(
-                responseBody.requestId,
+                RequestId(responseBody.requestId),
                 Instant.ofEpochMilli(data.timestamp()),
                 responseBody.statusCode.asRequestStatus(),
                 when (responseBody.statusCode.asRequestStatus()) {

src/main/kotlin/dev/dnpm/etl/processor/types.kt

@@ -0,0 +1,63 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor
+
+import org.springframework.http.MediaType
+import java.util.*
+
+class Fingerprint(val value: String) {
+    override fun hashCode() = value.hashCode()
+
+    override fun equals(other: Any?) = other is Fingerprint && other.value == value
+
+    companion object {
+        fun empty() = Fingerprint("")
+    }
+}
+
+@JvmInline
+value class RequestId(val value: String) {
+
+    fun isBlank() = value.isBlank()
+
+}
+
+fun randomRequestId() = RequestId(UUID.randomUUID().toString())
+
+@JvmInline
+value class PatientId(val value: String)
+
+@JvmInline
+value class PatientPseudonym(val value: String)
+
+fun emptyPatientPseudonym() = PatientPseudonym("")
+
+/**
+ * Custom MediaTypes
+ *
+ * @since 0.11.0
+ */
+object CustomMediaType {
+    val APPLICATION_VND_DNPM_V2_MTB_JSON = MediaType("application", "vnd.dnpm.v2.mtb+json")
+    const val APPLICATION_VND_DNPM_V2_MTB_JSON_VALUE = "application/vnd.dnpm.v2.mtb+json"
+
+    val APPLICATION_VND_DNPM_V2_RD_JSON = MediaType("application", "vnd.dnpm.v2.rd+json")
+    const val APPLICATION_VND_DNPM_V2_RD_JSON_VALUE = "application/vnd.dnpm.v2.rd+json"
+}

src/main/kotlin/dev/dnpm/etl/processor/web/ConfigController.kt

@@ -19,18 +19,15 @@
 
 package dev.dnpm.etl.processor.web
 
-import dev.dnpm.etl.processor.monitoring.ConnectionCheckResult
-import dev.dnpm.etl.processor.monitoring.ConnectionCheckService
-import dev.dnpm.etl.processor.monitoring.GPasConnectionCheckService
-import dev.dnpm.etl.processor.monitoring.OutputConnectionCheckService
+import dev.dnpm.etl.processor.monitoring.*
 import dev.dnpm.etl.processor.output.MtbFileSender
 import dev.dnpm.etl.processor.pseudonym.Generator
 import dev.dnpm.etl.processor.security.Role
 import dev.dnpm.etl.processor.security.UserRole
-import dev.dnpm.etl.processor.services.Token
-import dev.dnpm.etl.processor.services.TokenService
+import dev.dnpm.etl.processor.security.Token
+import dev.dnpm.etl.processor.security.TokenService
 import dev.dnpm.etl.processor.services.TransformationService
-import dev.dnpm.etl.processor.services.UserRoleService
+import dev.dnpm.etl.processor.security.UserRoleService
 import org.springframework.beans.factory.annotation.Qualifier
 import org.springframework.http.MediaType
 import org.springframework.http.codec.ServerSentEvent
@@ -56,16 +53,20 @@ class ConfigController(
     @GetMapping
     fun index(model: Model): String {
         val outputConnectionAvailable =
-            connectionCheckServices.filterIsInstance<OutputConnectionCheckService>().first().connectionAvailable()
+            connectionCheckServices.filterIsInstance<OutputConnectionCheckService>().firstOrNull()?.connectionAvailable()
 
         val gPasConnectionAvailable =
             connectionCheckServices.filterIsInstance<GPasConnectionCheckService>().firstOrNull()?.connectionAvailable()
 
+        val gIcsConnectionAvailable =
+            connectionCheckServices.filterIsInstance<GIcsConnectionCheckService>().firstOrNull()?.connectionAvailable()
+
         model.addAttribute("pseudonymGenerator", pseudonymGenerator.javaClass.simpleName)
         model.addAttribute("mtbFileSender", mtbFileSender.javaClass.simpleName)
         model.addAttribute("mtbFileEndpoint", mtbFileSender.endpoint())
         model.addAttribute("outputConnectionAvailable", outputConnectionAvailable)
         model.addAttribute("gPasConnectionAvailable", gPasConnectionAvailable)
+        model.addAttribute("gIcsConnectionAvailable", gIcsConnectionAvailable)
         model.addAttribute("tokensEnabled", tokenService != null)
         if (tokenService != null) {
             model.addAttribute("tokens", tokenService.findAll())
@@ -119,6 +120,24 @@ class ConfigController(
         return "configs/gPasConnectionAvailable"
     }
 
+    @GetMapping(params = ["gIcsConnectionAvailable"])
+    fun gIcsConnectionAvailable(model: Model): String {
+        val gIcsConnectionAvailable =
+            connectionCheckServices.filterIsInstance<GIcsConnectionCheckService>().firstOrNull()?.connectionAvailable()
+
+        model.addAttribute("mtbFileSender", mtbFileSender.javaClass.simpleName)
+        model.addAttribute("mtbFileEndpoint", mtbFileSender.endpoint())
+        model.addAttribute("gIcsConnectionAvailable", gIcsConnectionAvailable)
+        if (tokenService != null) {
+            model.addAttribute("tokensEnabled", true)
+            model.addAttribute("tokens", tokenService.findAll())
+        } else {
+            model.addAttribute("tokens", listOf<Token>())
+        }
+
+        return "configs/gIcsConnectionAvailable"
+    }
+
     @PostMapping(path = ["tokens"])
     fun addToken(@ModelAttribute("name") name: String, model: Model): String {
         if (tokenService == null) {
@@ -127,10 +146,11 @@ class ConfigController(
         } else {
             model.addAttribute("tokensEnabled", true)
             val result = tokenService.addToken(name)
-            if (result.isSuccess) {
-                model.addAttribute("newTokenValue", result.getOrDefault(""))
+            result.onSuccess {
+                model.addAttribute("newTokenValue", it)
                 model.addAttribute("success", true)
-            } else {
+            }
+            result.onFailure {
                 model.addAttribute("success", false)
             }
             model.addAttribute("tokens", tokenService.findAll())
@@ -182,12 +202,14 @@ class ConfigController(
     }
 
     @GetMapping(path = ["events"], produces = [MediaType.TEXT_EVENT_STREAM_VALUE])
+    @ResponseBody
     fun events(): Flux<ServerSentEvent<Any>> {
         return connectionCheckUpdateProducer.asFlux().map {
             val event = when (it) {
                 is ConnectionCheckResult.KafkaConnectionCheckResult -> "output-connection-check"
                 is ConnectionCheckResult.RestConnectionCheckResult -> "output-connection-check"
                 is ConnectionCheckResult.GPasConnectionCheckResult -> "gpas-connection-check"
+                is ConnectionCheckResult.GIcsConnectionCheckResult -> "gics-connection-check"
             }
 
             ServerSentEvent.builder<Any>()

src/main/kotlin/dev/dnpm/etl/processor/web/HomeController.kt

@@ -20,9 +20,10 @@
 package dev.dnpm.etl.processor.web
 
 import dev.dnpm.etl.processor.NotFoundException
+import dev.dnpm.etl.processor.PatientPseudonym
+import dev.dnpm.etl.processor.RequestId
 import dev.dnpm.etl.processor.monitoring.ReportService
-import dev.dnpm.etl.processor.monitoring.RequestId
-import dev.dnpm.etl.processor.monitoring.RequestRepository
+import dev.dnpm.etl.processor.services.RequestService
 import org.springframework.data.domain.Pageable
 import org.springframework.data.domain.Sort
 import org.springframework.data.web.PageableDefault
@@ -35,7 +36,7 @@ import org.springframework.web.bind.annotation.RequestMapping
 @Controller
 @RequestMapping(path = ["/"])
 class HomeController(
-    private val requestRepository: RequestRepository,
+    private val requestService: RequestService,
     private val reportService: ReportService
 ) {
 
@@ -44,20 +45,20 @@ class HomeController(
         @PageableDefault(page = 0, size = 20, sort = ["processedAt"], direction = Sort.Direction.DESC) pageable: Pageable,
         model: Model
     ): String {
-        val requests = requestRepository.findAll(pageable)
+        val requests = requestService.findAll(pageable)
         model.addAttribute("requests", requests)
 
         return "index"
     }
 
-    @GetMapping(path = ["patient/{patientId}"])
+    @GetMapping(path = ["patient/{patientPseudonym}"])
     fun byPatient(
-        @PathVariable patientId: String,
+        @PathVariable patientPseudonym: PatientPseudonym,
         @PageableDefault(page = 0, size = 20, sort = ["processedAt"], direction = Sort.Direction.DESC) pageable: Pageable,
         model: Model
     ): String {
-        val requests = requestRepository.findRequestByPatientId(patientId, pageable)
-        model.addAttribute("patientId", patientId)
+        val requests = requestService.findRequestByPatientId(patientPseudonym, pageable)
+        model.addAttribute("patientPseudonym", patientPseudonym.value)
         model.addAttribute("requests", requests)
 
         return "index"
@@ -65,7 +66,7 @@ class HomeController(
 
     @GetMapping(path = ["/report/{id}"])
     fun report(@PathVariable id: RequestId, model: Model): String {
-        val request = requestRepository.findByUuidEquals(id.toString()).orElse(null) ?: throw NotFoundException()
+        val request = requestService.findByUuid(id).orElse(null) ?: throw NotFoundException()
         model.addAttribute("request", request)
         model.addAttribute("issues", reportService.deserialize(request.report?.dataQualityReport))
 

src/main/kotlin/dev/dnpm/etl/processor/web/StatisticsRestController.kt

@@ -19,9 +19,9 @@
 
 package dev.dnpm.etl.processor.web
 
-import dev.dnpm.etl.processor.monitoring.RequestRepository
 import dev.dnpm.etl.processor.monitoring.RequestStatus
 import dev.dnpm.etl.processor.monitoring.RequestType
+import dev.dnpm.etl.processor.services.RequestService
 import org.springframework.beans.factory.annotation.Qualifier
 import org.springframework.http.MediaType
 import org.springframework.http.codec.ServerSentEvent
@@ -41,15 +41,15 @@ import java.time.temporal.ChronoUnit
 class StatisticsRestController(
     @Qualifier("statisticsUpdateProducer")
     private val statisticsUpdateProducer: Sinks.Many<Any>,
-    private val requestRepository: RequestRepository
+    private val requestService: RequestService
 ) {
 
     @GetMapping(path = ["requeststates"])
     fun requestStates(@RequestParam(required = false, defaultValue = "false") delete: Boolean): List<NameValue> {
         val states = if (delete) {
-            requestRepository.countDeleteStates()
+            requestService.countDeleteStates()
         } else {
-            requestRepository.countStates()
+            requestService.countStates()
         }
 
         return states
@@ -79,7 +79,7 @@ class StatisticsRestController(
         }
 
         val formatter = DateTimeFormatter.ofPattern("yyyy-MM-dd").withZone(ZoneId.of("Europe/Berlin"))
-        val data = requestRepository.findAll()
+        val data = requestService.findAll()
             .filter { it.type == requestType }
             .filter { it.processedAt.isAfter(Instant.now().minus(30, ChronoUnit.DAYS)) }
             .groupBy { formatter.format(it.processedAt) }
@@ -115,9 +115,9 @@ class StatisticsRestController(
     @GetMapping(path = ["requestpatientstates"])
     fun requestPatientStates(@RequestParam(required = false, defaultValue = "false") delete: Boolean): List<NameValue> {
         val states = if (delete) {
-            requestRepository.findPatientUniqueDeleteStates()
+            requestService.findPatientUniqueDeleteStates()
         } else {
-            requestRepository.findPatientUniqueStates()
+            requestService.findPatientUniqueStates()
         }
 
         return states.map {

src/main/resources/application-dev.yml

@@ -3,17 +3,34 @@ spring:
     compose:
       file: ./dev-compose.yml
 
+  security:
+    oauth2:
+      client:
+        registration:
+          custom:
+            client-name: App-Dev
+            client-id: app-dev
+            client-secret: very-secret-ae3f7a-5a9f-1190
+            scope:
+              - openid
+        provider:
+          custom:
+            issuer-uri: https://dnpm.dev/auth/realms/intern
+            user-name-attribute: name
+
 app:
-  #rest:
-  #  uri: http://localhost:9000/bwhc/etl/api
-  kafka:
-    topic: test
-    response-topic: test_response
-    servers: localhost:9094
-  #security:
-  #  admin-user: admin
-  #  admin-password: "{noop}very-secret"
+  rest:
+    uri: http://localhost/api
+  #kafka:
+  #  topic: test
+  #  response-topic: test_response
+  #  servers: localhost:9094
+  security:
+    admin-user: admin
+    admin-password: "{noop}very-secret"
+    enable-oidc: "true"
 
 server:
   port: 8000
 
+

src/main/resources/application.yml

@@ -16,6 +16,7 @@ spring:
           content:
             enabled: true
             paths: /**/*.js,/**/*.css,/**/*.svg,/**/*.jpeg
-
+app:
+  isGenomDeTestSubmission: true
 server:
   forward-headers-strategy: framework

src/main/resources/db/migration/mariadb/V0_4_0__RenamePatientPseudonym.sql

@@ -0,0 +1 @@
+ALTER TABLE request RENAME COLUMN patient_id TO patient_pseudonym;

src/main/resources/db/migration/postgresql/V0_4_0__RenamePatientPseudonym.sql

@@ -0,0 +1 @@
+ALTER TABLE request RENAME COLUMN patient_id TO patient_pseudonym;

src/main/resources/static/style.css

@@ -22,6 +22,10 @@
     --bg-gray-op: rgba(112, 128, 144, .35);
 }
 
+* {
+    font-family: sans-serif;
+}
+
 html {
     background: linear-gradient(-5deg, var(--bg-blue-op), transparent 10em);
     min-height: 100vh;
@@ -30,7 +34,6 @@ html {
 
 body {
     margin: 0 0 5em 0;
-    font-family: sans-serif;
     font-size: .8rem;
     color: var(--text);
 
@@ -619,6 +622,10 @@ input.inline:focus-visible {
     text-align: center;
 }
 
+.notification.info {
+    color: var(--bg-blue);
+}
+
 .notification.success {
     color: var(--bg-green);
 }
@@ -643,14 +650,16 @@ input.inline:focus-visible {
 
 .tab:hover,
 .tab.active {
-    background: var(--table-border);
+    background: var(--bg-gray);
+    color: white;
 }
 
 .tabcontent {
-    border: 1px solid var(--table-border);
+    border: 2px solid var(--bg-gray);
     border-radius: 0 .5em .5em .5em;
     display: none;
     padding: 1em;
+    background: white;
 }
 
 .tabcontent.active {
@@ -689,3 +698,13 @@ a.reload {
     padding: 1em;
     background: var(--bg-red-op);
 }
+
+.issue-message {
+    font-family: monospace;
+    font-weight: bolder;
+}
+
+.issue-path {
+    font-family: monospace;
+    line-height: 1rem;
+}

src/main/resources/templates/configs.html

@@ -49,6 +49,11 @@
                 </div>
             </section>
 
+            <section hx-ext="sse" th:sse-connect="@{/configs/events}">
+                <div th:insert="~{configs/gIcsConnectionAvailable.html}" th:hx-get="@{/configs?gIcsConnectionAvailable}" hx-trigger="sse:gics-connection-check">
+                </div>
+            </section>
+
             <section hx-ext="sse" th:sse-connect="@{/configs/events}">
                 <div th:insert="~{configs/outputConnectionAvailable.html}" th:hx-get="@{/configs?outputConnectionAvailable}" hx-trigger="sse:output-connection-check">
                 </div>

src/main/resources/templates/configs/gIcsConnectionAvailable.html

@@ -0,0 +1,24 @@
+<th:block th:if="${gIcsConnectionAvailable == null}">
+    <h2><span>🟦</span> gICS nicht konfiguriert - Einwilligung wird über Dateiinhalt geprüft</h2>
+</th:block>
+<th:block th:if="${gIcsConnectionAvailable != null}">
+    <h2><span th:if="${gIcsConnectionAvailable.available}">✅</span><span th:if="${not(gIcsConnectionAvailable.available)}">⚡</span> Verbindung zu gICS</h2>
+    <div>
+        Stand: <time style="font-weight: bold" th:datetime="${#temporals.formatISO(gIcsConnectionAvailable.timestamp)}" th:text="${#temporals.formatISO(gIcsConnectionAvailable.timestamp)}"></time>
+        &nbsp;|&nbsp;
+        Letzte Änderung: <time style="font-weight: bold" th:datetime="${#temporals.formatISO(gIcsConnectionAvailable.lastChange)}" th:text="${#temporals.formatISO(gIcsConnectionAvailable.lastChange)}"></time>
+    </div>
+    <div>
+        <span>Die Verbindung ist aktuell</span>
+        <strong th:if="${gIcsConnectionAvailable.available}" style="color: green">verfügbar.</strong>
+        <strong th:if="${not(gIcsConnectionAvailable.available)}" style="color: red">nicht verfügbar.</strong>
+    </div>
+    <div class="connection-display border">
+        <img th:src="@{/server.png}" alt="ETL-Processor" />
+        <span class="connection" th:classappend="${gIcsConnectionAvailable.available ? 'available' : ''}"></span>
+        <img th:src="@{/server.png}" alt="gICS" />
+        <span>ETL-Processor</span>
+        <span></span>
+        <span>gICS</span>
+    </div>
+</th:block>

src/main/resources/templates/configs/gPasConnectionAvailable.html

@@ -2,15 +2,20 @@
     <h2><span>🟦</span> gPAS nicht konfiguriert - Patienten-IDs werden intern anonymisiert</h2>
 </th:block>
 <th:block th:if="${gPasConnectionAvailable != null}">
-    <h2><span th:if="${gPasConnectionAvailable}">✅</span><span th:if="${not(gPasConnectionAvailable)}">⚡</span> Verbindung zu gPAS</h2>
+    <h2><span th:if="${gPasConnectionAvailable.available}">✅</span><span th:if="${not(gPasConnectionAvailable.available)}">⚡</span> Verbindung zu gPAS</h2>
     <div>
-        Die Verbindung ist aktuell
-        <strong th:if="${gPasConnectionAvailable}" style="color: green">verfügbar.</strong>
-        <strong th:if="${not(gPasConnectionAvailable)}" style="color: red">nicht verfügbar.</strong>
+        Stand: <time style="font-weight: bold" th:datetime="${#temporals.formatISO(gPasConnectionAvailable.timestamp)}" th:text="${#temporals.formatISO(gPasConnectionAvailable.timestamp)}"></time>
+        &nbsp;|&nbsp;
+        Letzte Änderung: <time style="font-weight: bold" th:datetime="${#temporals.formatISO(gPasConnectionAvailable.lastChange)}" th:text="${#temporals.formatISO(gPasConnectionAvailable.lastChange)}"></time>
+    </div>
+    <div>
+        <span>Die Verbindung ist aktuell</span>
+        <strong th:if="${gPasConnectionAvailable.available}" style="color: green">verfügbar.</strong>
+        <strong th:if="${not(gPasConnectionAvailable.available)}" style="color: red">nicht verfügbar.</strong>
     </div>
     <div class="connection-display border">
         <img th:src="@{/server.png}" alt="ETL-Processor" />
-        <span class="connection" th:classappend="${gPasConnectionAvailable ? 'available' : ''}"></span>
+        <span class="connection" th:classappend="${gPasConnectionAvailable.available ? 'available' : ''}"></span>
         <img th:src="@{/server.png}" alt="gPAS" />
         <span>ETL-Processor</span>
         <span></span>

src/main/resources/templates/configs/outputConnectionAvailable.html

@@ -1,16 +1,27 @@
-<h2><span th:if="${outputConnectionAvailable}">✅</span><span th:if="${not(outputConnectionAvailable)}">⚡</span> MTB-File Verbindung</h2>
+<th:block th:if="${outputConnectionAvailable == null}">
+    <h2><span>🟦</span> Keine Ausgabenkonfiguration</h2>
+</th:block>
+<th:block th:if="${outputConnectionAvailable != null}">
+    <h2><span th:if="${outputConnectionAvailable.available}">✅</span><span th:if="${not(outputConnectionAvailable.available)}">⚡</span> MTB-File Verbindung</h2>
+    <div>
+        Stand: <time style="font-weight: bold" th:datetime="${#temporals.formatISO(outputConnectionAvailable.timestamp)}" th:text="${#temporals.formatISO(outputConnectionAvailable.timestamp)}"></time>
+        &nbsp;|&nbsp;
+        Letzte Änderung: <time style="font-weight: bold" th:datetime="${#temporals.formatISO(outputConnectionAvailable.lastChange)}" th:text="${#temporals.formatISO(outputConnectionAvailable.lastChange)}"></time>
+    </div>
     <div>
         Verbindung über <code>[[ ${mtbFileSender} ]]</code>. Die Verbindung ist aktuell
-    <strong th:if="${outputConnectionAvailable}" style="color: green">verfügbar.</strong>
-    <strong th:if="${not(outputConnectionAvailable)}" style="color: red">nicht verfügbar.</strong>
+        <strong th:if="${outputConnectionAvailable.available}" style="color: green">verfügbar.</strong>
+        <strong th:if="${not(outputConnectionAvailable.available)}" style="color: red">nicht verfügbar.</strong>
     </div>
     <div class="connection-display border">
         <img th:src="@{/server.png}" alt="ETL-Processor" />
-    <span class="connection" th:classappend="${outputConnectionAvailable ? 'available' : ''}"></span>
+        <span class="connection" th:classappend="${outputConnectionAvailable.available ? 'available' : ''}"></span>
         <img th:if="${mtbFileSender.startsWith('Rest')}" th:src="@{/server.png}" alt="bwHC-Backend" />
         <img th:if="${mtbFileSender.startsWith('Kafka')}" th:src="@{/kafka.png}" alt="Kafka-Broker" />
         <span>ETL-Processor</span>
         <span></span>
-    <span th:if="${mtbFileSender.startsWith('Rest')}">bwHC-Backend</span>
+        <span th:if="${mtbFileSender.startsWith('RestBwhc')}">bwHC-Backend</span>
+        <span th:if="${mtbFileSender.startsWith('RestDip')}">DNPM:DIP-Backend</span>
         <span th:if="${mtbFileSender.startsWith('Kafka')}">Kafka-Broker</span>
     </div>
+</th:block>

src/main/resources/templates/index.html

@@ -12,26 +12,30 @@
         <h1>Alle Anfragen<a id="reload-notify" class="reload" title="Neue Anfragen" th:href="@{/}">⟳</a></h1>
 
         <div>
-            <h2 th:if="${patientId != null}">
-                Betreffend Patienten-Pseudonym <span class="monospace" th:text="${patientId}">***</span>
-                <a class="btn btn-blue" th:if="${patientId != null}" th:href="@{/}">Alle anzeigen</a>
+            <h2 th:if="${patientPseudonym != null}">
+                Betreffend Patienten-Pseudonym <span class="monospace" th:text="${patientPseudonym}">***</span>
+                <a class="btn btn-blue" th:if="${patientPseudonym != null}" th:href="@{/}">Alle anzeigen</a>
             </h2>
         </div>
 
-        <div class="border">
-            <div th:if="${patientId == null}" class="page-control">
+        <div class="border" th:if="${requests.totalElements == 0}">
+            <div class="notification info">Noch keine Anfragen eingegangen</div>
+        </div>
+
+        <div class="border" th:if="${requests.totalElements > 0}">
+            <div th:if="${patientPseudonym == null}" class="page-control">
                 <a id="first-page-link" th:href="@{/(page=${0})}" title="Zum Anfang: Taste W" th:if="${not requests.isFirst()}">&larrb;</a><a th:if="${requests.isFirst()}">&larrb;</a>
                 <a id="prev-page-link" th:href="@{/(page=${requests.getNumber() - 1})}" title="Seite zurück: Taste A" th:if="${not requests.isFirst()}">&larr;</a><a th:if="${requests.isFirst()}">&larr;</a>
                 <span>Seite [[ ${requests.getNumber() + 1} ]] von [[ ${requests.getTotalPages()} ]]</span>
                 <a id="next-page-link" th:href="@{/(page=${requests.getNumber() + 1})}" title="Seite vor: Taste D" th:if="${not requests.isLast()}">&rarr;</a><a th:if="${requests.isLast()}">&rarr;</a>
                 <a id="last-page-link" th:href="@{/(page=${requests.getTotalPages() - 1})}" title="Zum Ende: Taste S" th:if="${not requests.isLast()}">&rarrb;</a><a th:if="${requests.isLast()}">&rarrb;</a>
             </div>
-            <div th:if="${patientId != null}" class="page-control">
-                <a id="first-page-link" th:href="@{/patient/{patientId}(patientId=${patientId},page=${0})}" title="Zum Anfang: Taste W" th:if="${not requests.isFirst()}">&larrb;</a><a th:if="${requests.isFirst()}">&larrb;</a>
-                <a id="prev-page-link" th:href="@{/patient/{patientId}(patientId=${patientId},page=${requests.getNumber() - 1})}" title="Seite zurück: Taste A" th:if="${not requests.isFirst()}">&larr;</a><a th:if="${requests.isFirst()}">&larr;</a>
+            <div th:if="${patientPseudonym != null}" class="page-control">
+                <a id="first-page-link" th:href="@{/patient/{patientPseudonym}(patientPseudonym=${patientPseudonym},page=${0})}" title="Zum Anfang: Taste W" th:if="${not requests.isFirst()}">&larrb;</a><a th:if="${requests.isFirst()}">&larrb;</a>
+                <a id="prev-page-link" th:href="@{/patient/{patientPseudonym}(patientPseudonym=${patientPseudonym},page=${requests.getNumber() - 1})}" title="Seite zurück: Taste A" th:if="${not requests.isFirst()}">&larr;</a><a th:if="${requests.isFirst()}">&larr;</a>
                 <span>Seite [[ ${requests.getNumber() + 1} ]] von [[ ${requests.getTotalPages()} ]]</span>
-                <a id="next-page-link" th:href="@{/patient/{patientId}(patientId=${patientId},page=${requests.getNumber() + 1})}" title="Seite vor: Taste D" th:if="${not requests.isLast()}">&rarr;</a><a th:if="${requests.isLast()}">&rarr;</a>
-                <a id="last-page-link" th:href="@{/patient/{patientId}(patientId=${patientId},page=${requests.getTotalPages() - 1})}" title="Zum Ende: Taste S" th:if="${not requests.isLast()}">&rarrb;</a><a th:if="${requests.isLast()}">&rarrb;</a>
+                <a id="next-page-link" th:href="@{/patient/{patientPseudonym}(patientPseudonym=${patientPseudonym},page=${requests.getNumber() + 1})}" title="Seite vor: Taste D" th:if="${not requests.isLast()}">&rarr;</a><a th:if="${requests.isLast()}">&rarr;</a>
+                <a id="last-page-link" th:href="@{/patient/{patientPseudonym}(patientPseudonym=${patientPseudonym},page=${requests.getTotalPages() - 1})}" title="Zum Ende: Taste S" th:if="${not requests.isLast()}">&rarrb;</a><a th:if="${requests.isLast()}">&rarrb;</a>
             </div>
             <table class="paged">
                 <thead>
@@ -57,11 +61,11 @@
                             <th:block sec:authorize="not (hasRole('USER') or hasRole('ADMIN'))">[[ ${request.uuid} ]]</th:block>
                         </td>
                         <td><time th:datetime="${request.processedAt}">[[ ${request.processedAt} ]]</time></td>
-                        <td class="patient-id" th:if="${patientId != null}" sec:authorize="hasRole('USER') or hasRole('ADMIN')">
-                            [[ ${request.patientId} ]]
+                        <td class="patient-id" th:if="${patientPseudonym != null}" sec:authorize="hasRole('USER') or hasRole('ADMIN')">
+                            [[ ${request.patientPseudonym} ]]
                         </td>
-                        <td class="patient-id" th:if="${patientId == null}" sec:authorize="hasRole('USER') or hasRole('ADMIN')">
-                            <a th:href="@{/patient/{pid}(pid=${request.patientId})}">[[ ${request.patientId} ]]</a>
+                        <td class="patient-id" th:if="${patientPseudonym == null}" sec:authorize="hasRole('USER') or hasRole('ADMIN')">
+                            <a th:href="@{/patient/{pid}(pid=${request.patientPseudonym})}">[[ ${request.patientPseudonym} ]]</a>
                         </td>
                         <td class="patient-id" sec:authorize="not (hasRole('USER') or hasRole('ADMIN'))">***</td>
                     </tr>

src/main/resources/templates/report.html

@@ -31,7 +31,7 @@
                     <td th:style="${request.type.value == 'delete'} ? 'color: red;'"><small>[[ ${request.type} ]]</small></td>
                     <td>[[ ${request.uuid} ]]</td>
                     <td><time th:datetime="${request.processedAt}">[[ ${request.processedAt} ]]</time></td>
-                    <td class="patient-id" sec:authorize="authenticated">[[ ${request.patientId} ]]</td>
+                    <td class="patient-id" sec:authorize="authenticated">[[ ${request.patientPseudonym} ]]</td>
                     <td class="patient-id" sec:authorize="not authenticated">***</td>
                 </tr>
             </tbody>
@@ -47,7 +47,7 @@
             <thead>
                 <tr>
                     <th>Schweregrad</th>
-                    <th>Beschreibung</th>
+                    <th>Beschreibung und Pfad</th>
                 </tr>
             </thead>
             <tbody>
@@ -56,7 +56,11 @@
                 <td th:if="${issue.severity.value == 'warning'}" class="bg-yellow"><small>[[ ${issue.severity} ]]</small></td>
                 <td th:if="${issue.severity.value == 'error'}" class="bg-red"><small>[[ ${issue.severity} ]]</small></td>
                 <td th:if="${issue.severity.value == 'fatal'}" class="bg-red"><small>[[ ${issue.severity} ]]</small></td>
-                <td>[[ ${issue.message} ]]</td>
+                <td>
+                    <div class="issue-message">[[ ${issue.message} ]]</div>
+                    <div class="issue-path" th:if="${issue.path.isPresent()}">[[ ${issue.path.get()} ]]</div>
+                    <div class="issue-path" th:if="${issue.path.isEmpty()}"><i>Keine Angabe</i></div>
+                </td>
             </tr>
             </tbody>
         </table>

src/test/java/dev/dnpm/etl/processor/consent/GicsConsentServiceTest.java

@@ -0,0 +1,181 @@
+package dev.dnpm.etl.processor.consent;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import dev.dnpm.etl.processor.config.AppConfiguration;
+import dev.dnpm.etl.processor.config.AppFhirConfig;
+import dev.dnpm.etl.processor.config.GIcsConfigProperties;
+import org.hl7.fhir.r4.model.*;
+import org.hl7.fhir.r4.model.OperationOutcome.IssueSeverity;
+import org.hl7.fhir.r4.model.OperationOutcome.IssueType;
+import org.hl7.fhir.r4.model.OperationOutcome.OperationOutcomeIssueComponent;
+import org.hl7.fhir.r4.model.Parameters.ParametersParameterComponent;
+import org.junit.jupiter.api.BeforeEach;
+import org.junit.jupiter.api.Test;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.boot.test.autoconfigure.web.client.RestClientTest;
+import org.springframework.http.MediaType;
+import org.springframework.retry.support.RetryTemplate;
+import org.springframework.test.context.ContextConfiguration;
+import org.springframework.test.context.TestPropertySource;
+import org.springframework.test.web.client.MockRestServiceServer;
+import org.springframework.web.client.RestTemplate;
+
+import java.time.Instant;
+import java.util.Date;
+
+import static org.assertj.core.api.Assertions.assertThat;
+import static org.springframework.test.web.client.match.MockRestRequestMatchers.requestTo;
+import static org.springframework.test.web.client.response.MockRestResponseCreators.withServerError;
+import static org.springframework.test.web.client.response.MockRestResponseCreators.withSuccess;
+
+@ContextConfiguration(classes = {AppConfiguration.class, ObjectMapper.class})
+@TestPropertySource(properties = {
+    "app.consent.service=gics",
+    "app.consent.gics.uri=http://localhost:8090/ttp-fhir/fhir/gics"
+})
+@RestClientTest
+class GicsConsentServiceTest {
+
+    static final String GICS_BASE_URI = "http://localhost:8090/ttp-fhir/fhir/gics";
+
+    MockRestServiceServer mockRestServiceServer;
+    AppFhirConfig appFhirConfig;
+    GIcsConfigProperties gIcsConfigProperties;
+
+    GicsConsentService gicsConsentService;
+
+    @BeforeEach
+    void setUp(
+        @Autowired AppFhirConfig appFhirConfig,
+        @Autowired GIcsConfigProperties gIcsConfigProperties
+    ) {
+        this.appFhirConfig = appFhirConfig;
+        this.gIcsConfigProperties = gIcsConfigProperties;
+
+        var restTemplate = new RestTemplate();
+
+        this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate);
+        this.gicsConsentService = new GicsConsentService(
+            this.gIcsConfigProperties,
+            RetryTemplate.builder().maxAttempts(1).build(),
+            restTemplate,
+            this.appFhirConfig
+        );
+    }
+
+    @Test
+    void shouldReturnTtpBroadConsentStatus() {
+        final Parameters consentedResponse = new Parameters()
+            .addParameter(
+                new ParametersParameterComponent()
+                    .setName("consented")
+                    .setValue(new BooleanType().setValue(true))
+            );
+
+        mockRestServiceServer
+            .expect(
+                requestTo(
+                    "http://localhost:8090/ttp-fhir/fhir/gics" + GicsConsentService.IS_CONSENTED_ENDPOINT)
+            )
+            .andRespond(
+                withSuccess(
+                    appFhirConfig.fhirContext().newJsonParser().encodeResourceToString(consentedResponse),
+                    MediaType.APPLICATION_JSON
+                )
+            );
+
+        var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456");
+        assertThat(consentStatus).isEqualTo(TtpConsentStatus.BROAD_CONSENT_GIVEN);
+    }
+
+    @Test
+    void shouldReturnRevokedConsent() {
+        final Parameters revokedResponse = new Parameters()
+            .addParameter(
+                new ParametersParameterComponent()
+                    .setName("consented")
+                    .setValue(new BooleanType().setValue(false))
+            );
+
+        mockRestServiceServer
+            .expect(
+                requestTo(
+                    "http://localhost:8090/ttp-fhir/fhir/gics" + GicsConsentService.IS_CONSENTED_ENDPOINT)
+            )
+            .andRespond(
+                withSuccess(
+                    appFhirConfig.fhirContext().newJsonParser().encodeResourceToString(revokedResponse),
+                    MediaType.APPLICATION_JSON)
+            );
+
+        var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456");
+        assertThat(consentStatus).isEqualTo(TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED);
+    }
+
+
+    @Test
+    void shouldReturnInvalidParameterResponse() {
+        final OperationOutcome responseWithErrorOutcome = new OperationOutcome()
+            .addIssue(
+                new OperationOutcomeIssueComponent()
+                    .setSeverity(IssueSeverity.ERROR)
+                    .setCode(IssueType.PROCESSING)
+                    .setDiagnostics("Invalid policy parameter...")
+            );
+
+        mockRestServiceServer
+            .expect(
+                requestTo(GICS_BASE_URI + GicsConsentService.IS_CONSENTED_ENDPOINT)
+            )
+            .andRespond(
+                withSuccess(
+                    appFhirConfig.fhirContext().newJsonParser().encodeResourceToString(responseWithErrorOutcome),
+                    MediaType.APPLICATION_JSON
+                )
+            );
+
+        var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456");
+        assertThat(consentStatus).isEqualTo(TtpConsentStatus.FAILED_TO_ASK);
+    }
+
+    @Test
+    void shouldReturnRequestError() {
+        mockRestServiceServer
+            .expect(
+                requestTo(GICS_BASE_URI + GicsConsentService.IS_CONSENTED_ENDPOINT)
+            )
+            .andRespond(
+                withServerError()
+            );
+
+        var consentStatus = gicsConsentService.getTtpBroadConsentStatus("123456");
+        assertThat(consentStatus).isEqualTo(TtpConsentStatus.FAILED_TO_ASK);
+    }
+
+    @Test
+    void buildRequestParameterCurrentPolicyStatesForPersonTest() {
+        String pid = "12345678";
+        var result = gicsConsentService
+            .buildRequestParameterCurrentPolicyStatesForPerson(
+                pid,
+                Date.from(Instant.now()),
+                ConsentDomain.MODELLVORHABEN_64E
+            );
+
+        assertThat(result.getParameter())
+            .as("should contain 3 parameter resources")
+            .hasSize(3);
+
+        assertThat(((StringType) result.getParameter("domain").getValue()).getValue())
+            .isEqualTo(
+                gIcsConfigProperties.getGenomDeConsentDomainName()
+            );
+
+        assertThat(((Identifier) result.getParameter("personIdentifier").getValue()).getValue())
+            .isEqualTo(
+                pid
+            );
+    }
+
+
+}

src/test/kotlin/dev/dnpm/etl/processor/consent/Dnpm21BasedConsentEvaluatorTest.kt

@@ -0,0 +1,287 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.consent
+
+import dev.dnpm.etl.processor.ArgProvider
+import dev.pcvolkmer.mv64e.mtb.*
+import org.assertj.core.api.Assertions.assertThat
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Nested
+import org.junit.jupiter.api.extension.ExtendWith
+import org.junit.jupiter.params.ParameterizedTest
+import org.junit.jupiter.params.provider.Arguments
+import org.junit.jupiter.params.provider.ArgumentsSource
+import org.mockito.ArgumentMatchers.anyString
+import org.mockito.Mock
+import org.mockito.junit.jupiter.MockitoExtension
+import org.mockito.kotlin.whenever
+import java.time.Instant
+import java.util.*
+
+@ExtendWith(MockitoExtension::class)
+class Dnpm21BasedConsentEvaluatorTest {
+
+    @Nested
+    inner class WithGicsConsentEnabled {
+
+        lateinit var consentService: GicsConsentService
+        lateinit var consentEvaluator: ConsentEvaluator
+
+        @BeforeEach
+        fun setUp(
+            @Mock consentService: GicsConsentService
+        ) {
+            this.consentService = consentService
+            this.consentEvaluator = ConsentEvaluator(consentService)
+        }
+
+        @ParameterizedTest
+        @ArgumentsSource(WithGicsMtbFileProvider::class)
+        fun test(
+            mtbFile: Mtb,
+            ttpConsentStatus: TtpConsentStatus,
+            expectedConsentEvaluation: ConsentEvaluation
+        ) {
+            whenever(consentService.getTtpBroadConsentStatus(anyString())).thenReturn(
+                ttpConsentStatus
+            )
+            assertThat(consentEvaluator.check(mtbFile)).isEqualTo(expectedConsentEvaluation)
+        }
+    }
+
+    @Nested
+    inner class WithFileConsentOnly {
+
+        lateinit var consentService: MtbFileConsentService
+        lateinit var consentEvaluator: ConsentEvaluator
+
+        @BeforeEach
+        fun setUp() {
+            this.consentService = MtbFileConsentService()
+            this.consentEvaluator = ConsentEvaluator(consentService)
+        }
+
+        @ParameterizedTest
+        @ArgumentsSource(MtbFileProvider::class)
+        fun test(mtbFile: Mtb, expectedConsentEvaluation: ConsentEvaluation) {
+            assertThat(consentEvaluator.check(mtbFile)).isEqualTo(expectedConsentEvaluation)
+        }
+    }
+
+    // Util classes
+
+    class WithGicsMtbFileProvider : ArgProvider(
+        // Has file ModelProjectConsent and broad consent => consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.PERMIT),
+            TtpConsentStatus.BROAD_CONSENT_GIVEN,
+            ConsentEvaluation(TtpConsentStatus.BROAD_CONSENT_GIVEN, true)
+        ),
+        // Has file ModelProjectConsent and broad consent missing => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.PERMIT),
+            TtpConsentStatus.BROAD_CONSENT_MISSING,
+            ConsentEvaluation(TtpConsentStatus.BROAD_CONSENT_MISSING, false)
+        ),
+        // Has file ModelProjectConsent and broad consent missing or rejected => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.PERMIT),
+            TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED,
+            ConsentEvaluation(TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED, false)
+        ),
+        // Has file ModelProjectConsent and MV consent => consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.PERMIT),
+            TtpConsentStatus.GENOM_DE_CONSENT_SEQUENCING_PERMIT,
+            ConsentEvaluation(TtpConsentStatus.GENOM_DE_CONSENT_SEQUENCING_PERMIT, true)
+        ),
+        // Has file ModelProjectConsent and MV consent rejected => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.PERMIT),
+            TtpConsentStatus.GENOM_DE_SEQUENCING_REJECTED,
+            ConsentEvaluation(TtpConsentStatus.GENOM_DE_SEQUENCING_REJECTED, false)
+        ),
+        // Has file ModelProjectConsent and MV consent missing => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.PERMIT),
+            TtpConsentStatus.GENOM_DE_CONSENT_MISSING,
+            ConsentEvaluation(TtpConsentStatus.GENOM_DE_CONSENT_MISSING, false)
+        ),
+        // Has file ModelProjectConsent and no broad consent result => consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.PERMIT),
+            TtpConsentStatus.UNKNOWN_CHECK_FILE,
+            ConsentEvaluation(TtpConsentStatus.UNKNOWN_CHECK_FILE, true)
+        ),
+        // Has file ModelProjectConsent and failed to ask => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.PERMIT),
+            TtpConsentStatus.FAILED_TO_ASK,
+            ConsentEvaluation(TtpConsentStatus.FAILED_TO_ASK, false)
+        ),
+        // File ModelProjectConsent rejected and broad consent => consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.DENY),
+            TtpConsentStatus.BROAD_CONSENT_GIVEN,
+            ConsentEvaluation(TtpConsentStatus.BROAD_CONSENT_GIVEN, true)
+        ),
+        // File ModelProjectConsent rejected and broad consent missing => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.DENY),
+            TtpConsentStatus.BROAD_CONSENT_MISSING,
+            ConsentEvaluation(TtpConsentStatus.BROAD_CONSENT_MISSING, false)
+        ),
+        // File ModelProjectConsent rejected and broad consent missing or rejected => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.DENY),
+            TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED,
+            ConsentEvaluation(TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED, false)
+        ),
+        // File ModelProjectConsent rejected and MV consent => consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.DENY),
+            TtpConsentStatus.GENOM_DE_CONSENT_SEQUENCING_PERMIT,
+            ConsentEvaluation(TtpConsentStatus.GENOM_DE_CONSENT_SEQUENCING_PERMIT, true)
+        ),
+        // File ModelProjectConsent rejected and MV consent rejected => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.DENY),
+            TtpConsentStatus.GENOM_DE_SEQUENCING_REJECTED,
+            ConsentEvaluation(TtpConsentStatus.GENOM_DE_SEQUENCING_REJECTED, false)
+        ),
+        // File ModelProjectConsent rejected and MV consent missing => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.DENY),
+            TtpConsentStatus.GENOM_DE_CONSENT_MISSING,
+            ConsentEvaluation(TtpConsentStatus.GENOM_DE_CONSENT_MISSING, false)
+        ),
+        // File ModelProjectConsent rejected and no broad consent result => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.DENY),
+            TtpConsentStatus.UNKNOWN_CHECK_FILE,
+            ConsentEvaluation(TtpConsentStatus.UNKNOWN_CHECK_FILE, false)
+        ),
+        // File ModelProjectConsent rejected and failed to ask => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.DENY),
+            TtpConsentStatus.FAILED_TO_ASK,
+            ConsentEvaluation(TtpConsentStatus.FAILED_TO_ASK, false)
+        )
+    ) {
+
+        companion object {
+            fun buildMtb(consentProvision: ConsentProvision): Mtb {
+                return Mtb.builder()
+                    .patient(
+                        Patient.builder().id("TEST_12345678")
+                            .birthDate(Date.from(Instant.parse("2000-08-08T12:34:56Z"))).gender(
+                                GenderCoding.builder().code(GenderCodingCode.MALE).build()
+                            ).build()
+                    )
+                    .metadata(
+                        MvhMetadata.builder().modelProjectConsent(
+                            ModelProjectConsent.builder().provisions(
+                                listOf(
+                                    Provision.builder().date(Date()).type(consentProvision)
+                                        .purpose(ModelProjectConsentPurpose.SEQUENCING).build()
+                                )
+                            ).build()
+                        ).build()
+                    )
+                    .episodesOfCare(
+                        listOf(
+                            MtbEpisodeOfCare.builder().id("1")
+                                .patient(Reference.builder().id("TEST_12345678").build())
+                                .build()
+                        )
+                    )
+                    .build()
+            }
+        }
+    }
+
+    class MtbFileProvider : ArgProvider(
+        // Has file consent => consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.PERMIT),
+            ConsentEvaluation(TtpConsentStatus.UNKNOWN_CHECK_FILE, true)
+        ),
+        // File consent rejected => no consent given
+        Arguments.of(
+            buildMtb(ConsentProvision.DENY),
+            ConsentEvaluation(TtpConsentStatus.UNKNOWN_CHECK_FILE, false)
+        ),
+        // policy REIDENTIFICATION has no effect on ConsentEvaluation
+        Arguments.of(
+            buildMtb(ModelProjectConsentPurpose.REIDENTIFICATION, ConsentProvision.DENY),
+            ConsentEvaluation(TtpConsentStatus.UNKNOWN_CHECK_FILE, false)
+        ), Arguments.of(
+            buildMtb(ModelProjectConsentPurpose.REIDENTIFICATION, ConsentProvision.PERMIT),
+            ConsentEvaluation(TtpConsentStatus.UNKNOWN_CHECK_FILE, false)
+        ),
+        // policy CASE_IDENTIFICATION has no effect on ConsentEvaluation
+        Arguments.of(
+            buildMtb(ModelProjectConsentPurpose.CASE_IDENTIFICATION, ConsentProvision.DENY),
+            ConsentEvaluation(TtpConsentStatus.UNKNOWN_CHECK_FILE, false)
+        ), Arguments.of(
+            buildMtb(ModelProjectConsentPurpose.CASE_IDENTIFICATION, ConsentProvision.PERMIT),
+            ConsentEvaluation(TtpConsentStatus.UNKNOWN_CHECK_FILE, false)
+        )
+    ) {
+
+        companion object {
+            fun buildMtb(consentProvision: ConsentProvision): Mtb {
+                return buildMtb(ModelProjectConsentPurpose.SEQUENCING, consentProvision)
+            }
+
+            fun buildMtb(
+                policy: ModelProjectConsentPurpose,
+                consentProvision: ConsentProvision
+            ): Mtb {
+                return Mtb.builder()
+                    .patient(
+                        Patient.builder().id("TEST_12345678")
+                            .birthDate(Date.from(Instant.parse("2000-08-08T12:34:56Z"))).gender(
+                                GenderCoding.builder().code(GenderCodingCode.MALE).build()
+                            ).build()
+                    )
+                    .metadata(
+                        MvhMetadata.builder().modelProjectConsent(
+                            ModelProjectConsent.builder().provisions(
+                                listOf(
+                                    Provision.builder().date(Date()).type(consentProvision)
+                                        .purpose(policy).build()
+                                )
+                            ).build()
+                        ).build()
+                    )
+                    .episodesOfCare(
+                        listOf(
+                            MtbEpisodeOfCare.builder().id("1")
+                                .patient(Reference.builder().id("TEST_12345678").build())
+                                .build()
+                        )
+                    )
+                    .build()
+            }
+        }
+    }
+
+}

src/test/kotlin/dev/dnpm/etl/processor/helpers.kt

@@ -0,0 +1,31 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor
+
+import org.junit.jupiter.api.extension.ExtensionContext
+import org.junit.jupiter.params.provider.Arguments
+import org.junit.jupiter.params.provider.ArgumentsProvider
+import java.util.stream.Stream
+
+open class ArgProvider(vararg val data: Arguments) : ArgumentsProvider {
+    override fun provideArguments(
+        context: ExtensionContext?
+    ): Stream<out Arguments> = Stream.of(*data)
+}

src/test/kotlin/dev/dnpm/etl/processor/input/KafkaInputListenerTest.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -20,10 +20,12 @@
 package dev.dnpm.etl.processor.input
 
 import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.Consent
-import de.ukw.ccc.bwhc.dto.MtbFile
-import de.ukw.ccc.bwhc.dto.Patient
+import dev.dnpm.etl.processor.CustomMediaType
+import dev.dnpm.etl.processor.consent.ConsentEvaluation
+import dev.dnpm.etl.processor.consent.ConsentEvaluator
+import dev.dnpm.etl.processor.consent.TtpConsentStatus
 import dev.dnpm.etl.processor.services.RequestProcessor
+import dev.pcvolkmer.mv64e.mtb.*
 import org.apache.kafka.clients.consumer.ConsumerRecord
 import org.apache.kafka.common.header.internals.RecordHeader
 import org.apache.kafka.common.header.internals.RecordHeaders
@@ -31,82 +33,263 @@ import org.apache.kafka.common.record.TimestampType
 import org.junit.jupiter.api.BeforeEach
 import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.extension.ExtendWith
-import org.mockito.ArgumentMatchers.anyString
 import org.mockito.Mock
 import org.mockito.junit.jupiter.MockitoExtension
-import org.mockito.kotlin.any
-import org.mockito.kotlin.times
-import org.mockito.kotlin.verify
+import org.mockito.kotlin.*
 import java.util.*
 
 @ExtendWith(MockitoExtension::class)
 class KafkaInputListenerTest {
 
     private lateinit var requestProcessor: RequestProcessor
+    private lateinit var consentEvaluator: ConsentEvaluator
     private lateinit var objectMapper: ObjectMapper
+
     private lateinit var kafkaInputListener: KafkaInputListener
 
     @BeforeEach
     fun setup(
-        @Mock requestProcessor: RequestProcessor
+        @Mock requestProcessor: RequestProcessor,
+        @Mock consentEvaluator: ConsentEvaluator,
     ) {
         this.requestProcessor = requestProcessor
+        this.consentEvaluator = consentEvaluator
         this.objectMapper = ObjectMapper()
 
-        this.kafkaInputListener = KafkaInputListener(requestProcessor, objectMapper)
+        this.kafkaInputListener = KafkaInputListener(requestProcessor, consentEvaluator, objectMapper)
     }
 
     @Test
     fun shouldProcessMtbFileRequest() {
-        val mtbFile = MtbFile.builder()
-            .withPatient(Patient.builder().withId("DUMMY_12345678").build())
-            .withConsent(Consent.builder().withStatus(Consent.Status.ACTIVE).build())
+        whenever(consentEvaluator.check(any())).thenReturn(
+            ConsentEvaluation(
+                TtpConsentStatus.BROAD_CONSENT_GIVEN,
+                true
+            )
+        )
+
+        val mtbFile = Mtb.builder()
+            .patient(Patient.builder().id("DUMMY_12345678").build())
+            .metadata(
+                MvhMetadata
+                    .builder()
+                    .modelProjectConsent(
+                        ModelProjectConsent
+                            .builder()
+                            .provisions(
+                                listOf(
+                                    Provision.builder().type(ConsentProvision.PERMIT)
+                                        .purpose(ModelProjectConsentPurpose.SEQUENCING).build()
+                                )
+                            ).build()
+                    )
+                    .build()
+            )
             .build()
 
-        kafkaInputListener.onMessage(ConsumerRecord("testtopic", 0, 0, "", this.objectMapper.writeValueAsString(mtbFile)))
+        kafkaInputListener.onMessage(
+            ConsumerRecord(
+                "testtopic",
+                0,
+                0,
+                "",
+                this.objectMapper.writeValueAsString(mtbFile)
+            )
+        )
 
-        verify(requestProcessor, times(1)).processMtbFile(any())
+        verify(requestProcessor, times(1)).processMtbFile(any<Mtb>())
     }
 
     @Test
     fun shouldProcessDeleteRequest() {
-        val mtbFile = MtbFile.builder()
-            .withPatient(Patient.builder().withId("DUMMY_12345678").build())
-            .withConsent(Consent.builder().withStatus(Consent.Status.REJECTED).build())
+        whenever(consentEvaluator.check(any())).thenReturn(
+            ConsentEvaluation(
+                TtpConsentStatus.BROAD_CONSENT_GIVEN,
+                false
+            )
+        )
+
+        val mtbFile = Mtb.builder()
+            .patient(Patient.builder().id("DUMMY_12345678").build())
+            .metadata(
+                MvhMetadata
+                    .builder()
+                    .modelProjectConsent(
+                        ModelProjectConsent
+                            .builder()
+                            .provisions(
+                                listOf(
+                                    Provision.builder().type(ConsentProvision.DENY)
+                                        .purpose(ModelProjectConsentPurpose.SEQUENCING).build()
+                                )
+                            ).build()
+                    )
+                    .build()
+            )
             .build()
 
-        kafkaInputListener.onMessage(ConsumerRecord("testtopic", 0, 0, "", this.objectMapper.writeValueAsString(mtbFile)))
+        kafkaInputListener.onMessage(
+            ConsumerRecord(
+                "testtopic",
+                0,
+                0,
+                "",
+                this.objectMapper.writeValueAsString(mtbFile)
+            )
+        )
 
-        verify(requestProcessor, times(1)).processDeletion(anyString())
+        verify(requestProcessor, times(1)).processDeletion(
+            anyValueClass(),
+            eq(TtpConsentStatus.UNKNOWN_CHECK_FILE)
+        )
     }
 
     @Test
     fun shouldProcessMtbFileRequestWithExistingRequestId() {
-        val mtbFile = MtbFile.builder()
-            .withPatient(Patient.builder().withId("DUMMY_12345678").build())
-            .withConsent(Consent.builder().withStatus(Consent.Status.ACTIVE).build())
+        whenever(consentEvaluator.check(any())).thenReturn(
+            ConsentEvaluation(
+                TtpConsentStatus.BROAD_CONSENT_GIVEN,
+                true
+            )
+        )
+
+        val mtbFile = Mtb.builder()
+            .patient(Patient.builder().id("DUMMY_12345678").build())
+            .metadata(
+                MvhMetadata
+                    .builder()
+                    .modelProjectConsent(
+                        ModelProjectConsent
+                            .builder()
+                            .provisions(
+                                listOf(
+                                    Provision.builder().type(ConsentProvision.PERMIT)
+                                        .purpose(ModelProjectConsentPurpose.SEQUENCING).build()
+                                )
+                            ).build()
+                    )
+                    .build()
+            )
             .build()
 
         val headers = RecordHeaders(listOf(RecordHeader("requestId", UUID.randomUUID().toString().toByteArray())))
         kafkaInputListener.onMessage(
-            ConsumerRecord("testtopic", 0, 0, -1L, TimestampType.NO_TIMESTAMP_TYPE, -1, -1, "", this.objectMapper.writeValueAsString(mtbFile), headers, Optional.empty())
+            ConsumerRecord(
+                "testtopic",
+                0,
+                0,
+                -1L,
+                TimestampType.NO_TIMESTAMP_TYPE,
+                -1,
+                -1,
+                "",
+                this.objectMapper.writeValueAsString(mtbFile),
+                headers,
+                Optional.empty()
+            )
         )
 
-        verify(requestProcessor, times(1)).processMtbFile(any(), anyString())
+        verify(requestProcessor, times(1)).processMtbFile(any<Mtb>(), anyValueClass())
     }
 
     @Test
     fun shouldProcessDeleteRequestWithExistingRequestId() {
-        val mtbFile = MtbFile.builder()
-            .withPatient(Patient.builder().withId("DUMMY_12345678").build())
-            .withConsent(Consent.builder().withStatus(Consent.Status.REJECTED).build())
+        whenever(consentEvaluator.check(any())).thenReturn(
+            ConsentEvaluation(
+                TtpConsentStatus.BROAD_CONSENT_GIVEN,
+                false
+            )
+        )
+
+        val mtbFile = Mtb.builder()
+            .patient(Patient.builder().id("DUMMY_12345678").build())
+            .metadata(
+                MvhMetadata
+                    .builder()
+                    .modelProjectConsent(
+                        ModelProjectConsent
+                            .builder()
+                            .provisions(
+                                listOf(
+                                    Provision.builder().type(ConsentProvision.DENY)
+                                        .purpose(ModelProjectConsentPurpose.SEQUENCING).build()
+                                )
+                            ).build()
+                    )
+                    .build()
+            )
             .build()
 
         val headers = RecordHeaders(listOf(RecordHeader("requestId", UUID.randomUUID().toString().toByteArray())))
         kafkaInputListener.onMessage(
-            ConsumerRecord("testtopic", 0, 0, -1L, TimestampType.NO_TIMESTAMP_TYPE, -1, -1, "", this.objectMapper.writeValueAsString(mtbFile), headers, Optional.empty())
+            ConsumerRecord(
+                "testtopic",
+                0,
+                0,
+                -1L,
+                TimestampType.NO_TIMESTAMP_TYPE,
+                -1,
+                -1,
+                "",
+                this.objectMapper.writeValueAsString(mtbFile),
+                headers,
+                Optional.empty()
+            )
+        )
+        verify(requestProcessor, times(1)).processDeletion(
+            anyValueClass(), anyValueClass(), eq(
+                TtpConsentStatus.UNKNOWN_CHECK_FILE
+            )
+        )
+    }
+
+    @Test
+    fun shouldNotProcessDnpmV2Request() {
+        val mtbFile = Mtb.builder()
+            .patient(Patient.builder().id("DUMMY_12345678").build())
+            .metadata(
+                MvhMetadata
+                    .builder()
+                    .modelProjectConsent(
+                        ModelProjectConsent
+                            .builder()
+                            .provisions(
+                                listOf(
+                                    Provision.builder().type(ConsentProvision.DENY)
+                                        .purpose(ModelProjectConsentPurpose.SEQUENCING).build()
+                                )
+                            ).build()
+                    )
+                    .build()
+            )
+            .build()
+
+        val headers = RecordHeaders(
+            listOf(
+                RecordHeader("requestId", UUID.randomUUID().toString().toByteArray()),
+                RecordHeader("contentType", CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON_VALUE.toByteArray())
+            )
+        )
+        kafkaInputListener.onMessage(
+            ConsumerRecord(
+                "testtopic",
+                0,
+                0,
+                -1L,
+                TimestampType.NO_TIMESTAMP_TYPE,
+                -1,
+                -1,
+                "",
+                this.objectMapper.writeValueAsString(mtbFile),
+                headers,
+                Optional.empty()
+            )
+        )
+        verify(requestProcessor, times(0)).processDeletion(
+            anyValueClass(), anyValueClass(), eq(
+                TtpConsentStatus.UNKNOWN_CHECK_FILE
+            )
         )
-        verify(requestProcessor, times(1)).processDeletion(anyString(), anyString())
     }
 
 }

src/test/kotlin/dev/dnpm/etl/processor/input/MtbFileRestControllerTest.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -20,131 +20,207 @@
 package dev.dnpm.etl.processor.input
 
 import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.*
+import dev.dnpm.etl.processor.ArgProvider
+import dev.dnpm.etl.processor.CustomMediaType
+import dev.dnpm.etl.processor.consent.ConsentEvaluation
+import dev.dnpm.etl.processor.consent.ConsentEvaluator
+import dev.dnpm.etl.processor.consent.TtpConsentStatus
 import dev.dnpm.etl.processor.services.RequestProcessor
-import org.assertj.core.api.Assertions.assertThat
+import dev.pcvolkmer.mv64e.mtb.*
 import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Nested
 import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.extension.ExtendWith
+import org.junit.jupiter.params.ParameterizedTest
+import org.junit.jupiter.params.provider.Arguments
+import org.junit.jupiter.params.provider.ArgumentsSource
 import org.mockito.Mock
 import org.mockito.Mockito.times
 import org.mockito.Mockito.verify
 import org.mockito.junit.jupiter.MockitoExtension
 import org.mockito.kotlin.any
-import org.mockito.kotlin.argumentCaptor
-import org.springframework.http.MediaType
+import org.mockito.kotlin.anyValueClass
+import org.mockito.kotlin.whenever
+import org.springframework.core.io.ClassPathResource
 import org.springframework.test.web.servlet.MockMvc
 import org.springframework.test.web.servlet.delete
 import org.springframework.test.web.servlet.post
 import org.springframework.test.web.servlet.setup.MockMvcBuilders
+import java.time.Instant
+import java.util.*
 
 @ExtendWith(MockitoExtension::class)
 class MtbFileRestControllerTest {
 
+    private val objectMapper = ObjectMapper()
+
+    @Nested
+    inner class RequestsForDnpmDataModel21 {
+
         private lateinit var mockMvc: MockMvc
 
         private lateinit var requestProcessor: RequestProcessor
-
-    private val objectMapper = ObjectMapper()
+        private lateinit var consentEvaluator: ConsentEvaluator
 
         @BeforeEach
         fun setup(
-        @Mock requestProcessor: RequestProcessor
+            @Mock requestProcessor: RequestProcessor,
+            @Mock consentEvaluator: ConsentEvaluator
         ) {
             this.requestProcessor = requestProcessor
-        val controller = MtbFileRestController(requestProcessor)
+            this.consentEvaluator = consentEvaluator
+            val controller = MtbFileRestController(
+                requestProcessor,
+                consentEvaluator
+            )
             this.mockMvc = MockMvcBuilders.standaloneSetup(controller).build()
         }
 
         @Test
-    fun shouldProcessMtbFilePostRequest() {
-        val mtbFile = MtbFile.builder()
-            .withPatient(
-                Patient.builder()
-                    .withId("TEST_12345678")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
-                    .build()
+        fun shouldRespondPostRequest() {
+            whenever(consentEvaluator.check(any())).thenReturn(
+                ConsentEvaluation(
+                    TtpConsentStatus.BROAD_CONSENT_GIVEN,
+                    true
                 )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.ACTIVE)
-                    .withPatient("TEST_12345678")
-                    .build()
             )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("TEST_12345678")
-                    .withPeriod(PeriodStart("2023-08-08"))
-                    .build()
-            )
-            .build()
 
-        mockMvc.post("/mtbfile") {
-            content = objectMapper.writeValueAsString(mtbFile)
-            contentType = MediaType.APPLICATION_JSON
+            val mtbFileContent =
+                ClassPathResource("mv64e-mtb-fake-patient.json").inputStream.readAllBytes().toString(Charsets.UTF_8)
+
+            mockMvc.post("/mtb") {
+                content = mtbFileContent
+                contentType = CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON
             }.andExpect {
                 status {
                     isAccepted()
                 }
             }
 
-        verify(requestProcessor, times(1)).processMtbFile(any())
+            verify(requestProcessor, times(1)).processMtbFile(any<Mtb>())
         }
 
-    @Test
-    fun shouldProcessMtbFilePostRequestWithRejectedConsent() {
-        val mtbFile = MtbFile.builder()
-            .withPatient(
-                Patient.builder()
-                    .withId("TEST_12345678")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
-                    .build()
+        @ParameterizedTest
+        @ArgumentsSource(Dnpm21MtbFile::class)
+        fun shouldProcessPostRequest(mtb: Mtb, broadConsent: TtpConsentStatus, shouldProcess: String) {
+            whenever(consentEvaluator.check(any<Mtb>())).thenReturn(
+                ConsentEvaluation(
+                    broadConsent,
+                    shouldProcess == "process"
                 )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.REJECTED)
-                    .withPatient("TEST_12345678")
-                    .build()
             )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("TEST_12345678")
-                    .withPeriod(PeriodStart("2023-08-08"))
-                    .build()
-            )
-            .build()
 
             mockMvc.post("/mtbfile") {
-            content = objectMapper.writeValueAsString(mtbFile)
-            contentType = MediaType.APPLICATION_JSON
+                content = objectMapper.writeValueAsString(mtb)
+                contentType = CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON
             }.andExpect {
                 status {
                     isAccepted()
                 }
             }
 
-        val captor = argumentCaptor<String>()
-        verify(requestProcessor, times(1)).processDeletion(captor.capture())
-        assertThat(captor.firstValue).isEqualTo("TEST_12345678")
+            if (shouldProcess == "process") {
+                verify(requestProcessor, times(1)).processMtbFile(any<Mtb>())
+            } else {
+                verify(requestProcessor, times(1)).processDeletion(
+                    anyValueClass(),
+                    org.mockito.kotlin.eq(broadConsent)
+                )
+            }
         }
 
         @Test
-    fun shouldProcessMtbFileDeleteRequest() {
+        fun shouldProcessDeleteRequest() {
             mockMvc.delete("/mtbfile/TEST_12345678").andExpect {
                 status {
                     isAccepted()
                 }
             }
 
-        val captor = argumentCaptor<String>()
-        verify(requestProcessor, times(1)).processDeletion(captor.capture())
-        assertThat(captor.firstValue).isEqualTo("TEST_12345678")
+            verify(requestProcessor, times(1)).processDeletion(
+                anyValueClass(),
+                org.mockito.kotlin.eq(TtpConsentStatus.UNKNOWN_CHECK_FILE)
+            )
+            verify(consentEvaluator, times(0)).check(any<Mtb>())
+        }
+    }
 }
 
+class Dnpm21MtbFile : ArgProvider(
+    // No Metadata and no broad consent => delete
+    Arguments.of(
+        buildMtb(null),
+        TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED,
+        "delete"
+    ),
+    // No Metadata and broad consent given => process
+    Arguments.of(
+        buildMtb(null),
+        TtpConsentStatus.BROAD_CONSENT_GIVEN,
+        "process"
+    ),
+    // No model project consent and no broad consent => delete
+    Arguments.of(
+        buildMtb(MvhMetadata.builder().modelProjectConsent(ModelProjectConsent.builder().build()).build()),
+        TtpConsentStatus.BROAD_CONSENT_MISSING_OR_REJECTED,
+        "delete"
+    ),
+    // No model project consent and broad consent given => process
+    Arguments.of(
+        buildMtb(MvhMetadata.builder().modelProjectConsent(ModelProjectConsent.builder().build()).build()),
+        TtpConsentStatus.BROAD_CONSENT_GIVEN,
+        "process"
+    ),
+    // Model project consent given and no broad consent => process
+    Arguments.of(
+        buildMtb(
+            MvhMetadata.builder().modelProjectConsent(
+                ModelProjectConsent.builder().provisions(
+                    listOf(
+                        Provision.builder().date(Date()).type(ConsentProvision.PERMIT)
+                            .purpose(ModelProjectConsentPurpose.SEQUENCING).build()
+                    )
+                ).build()
+            ).build()
+        ),
+        TtpConsentStatus.UNKNOWN_CHECK_FILE,
+        "process"
+    ),
+    // Model project consent given and broad consent given => process
+    Arguments.of(
+        buildMtb(
+            MvhMetadata.builder().modelProjectConsent(
+                ModelProjectConsent.builder().provisions(
+                    listOf(
+                        Provision.builder().date(Date()).type(ConsentProvision.PERMIT)
+                            .purpose(ModelProjectConsentPurpose.SEQUENCING).build()
+                    )
+                ).build()
+            ).build()
+        ),
+        TtpConsentStatus.BROAD_CONSENT_GIVEN,
+        "process"
+    )
+) {
+
+    companion object {
+        fun buildMtb(metadata: MvhMetadata?): Mtb {
+            return Mtb.builder()
+                .patient(
+                    Patient.builder().id("TEST_12345678")
+                        .birthDate(Date.from(Instant.parse("2000-08-08T12:34:56Z"))).gender(
+                            GenderCoding.builder().code(GenderCodingCode.MALE).build()
+                        ).build()
+                )
+                .metadata(metadata)
+                .episodesOfCare(
+                    listOf(
+                        MtbEpisodeOfCare.builder().id("1")
+                            .patient(Reference.builder().id("TEST_12345678").build())
+                            .build()
+                    )
+                )
+                .build()
+        }
+    }
 }

src/test/kotlin/dev/dnpm/etl/processor/output/KafkaMtbFileSenderTest.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -20,16 +20,20 @@
 package dev.dnpm.etl.processor.output
 
 import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.*
+import dev.dnpm.etl.processor.CustomMediaType
+import dev.dnpm.etl.processor.PatientPseudonym
+import dev.dnpm.etl.processor.RequestId
 import dev.dnpm.etl.processor.config.KafkaProperties
 import dev.dnpm.etl.processor.monitoring.RequestStatus
+import dev.pcvolkmer.mv64e.mtb.*
+import org.apache.kafka.clients.producer.ProducerRecord
 import org.assertj.core.api.Assertions.assertThat
 import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Nested
 import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.extension.ExtendWith
 import org.junit.jupiter.params.ParameterizedTest
 import org.junit.jupiter.params.provider.MethodSource
-import org.mockito.ArgumentMatchers.anyString
 import org.mockito.Mock
 import org.mockito.junit.jupiter.MockitoExtension
 import org.mockito.kotlin.*
@@ -37,12 +41,17 @@ import org.springframework.kafka.core.KafkaTemplate
 import org.springframework.kafka.support.SendResult
 import org.springframework.retry.policy.SimpleRetryPolicy
 import org.springframework.retry.support.RetryTemplateBuilder
+import java.time.Instant
+import java.util.*
 import java.util.concurrent.CompletableFuture.completedFuture
 import java.util.concurrent.ExecutionException
 
 @ExtendWith(MockitoExtension::class)
 class KafkaMtbFileSenderTest {
 
+    @Nested
+    inner class BwhcV1Record {
+
         private lateinit var kafkaTemplate: KafkaTemplate<String, String>
 
         private lateinit var kafkaMtbFileSender: KafkaMtbFileSender
@@ -63,93 +72,21 @@ class KafkaMtbFileSenderTest {
         }
 
         @ParameterizedTest
-    @MethodSource("requestWithResponseSource")
-    fun shouldSendMtbFileRequestAndReturnExpectedState(testData: TestData) {
-        doAnswer {
-            if (null != testData.exception) {
-                throw testData.exception
-            }
-            completedFuture(SendResult<String, String>(null, null))
-        }.whenever(kafkaTemplate).send(anyString(), anyString(), anyString())
-
-        val response = kafkaMtbFileSender.send(MtbFileSender.MtbFileRequest("TestID", mtbFile(Consent.Status.ACTIVE)))
-        assertThat(response.status).isEqualTo(testData.requestStatus)
-    }
-
-    @ParameterizedTest
-    @MethodSource("requestWithResponseSource")
+        @MethodSource("dev.dnpm.etl.processor.output.KafkaMtbFileSenderTest#requestWithResponseSource")
         fun shouldSendDeleteRequestAndReturnExpectedState(testData: TestData) {
             doAnswer {
                 if (null != testData.exception) {
                     throw testData.exception
                 }
                 completedFuture(SendResult<String, String>(null, null))
-        }.whenever(kafkaTemplate).send(anyString(), anyString(), anyString())
+            }.whenever(kafkaTemplate).send(any<ProducerRecord<String, String>>())
 
-        val response = kafkaMtbFileSender.send(MtbFileSender.DeleteRequest("TestID", "PID"))
+            val response = kafkaMtbFileSender.send(DeleteRequest(TEST_REQUEST_ID, TEST_PATIENT_PSEUDONYM))
             assertThat(response.status).isEqualTo(testData.requestStatus)
         }
 
-    @Test
-    fun shouldSendMtbFileRequestWithCorrectKeyAndBody() {
-        doAnswer {
-            completedFuture(SendResult<String, String>(null, null))
-        }.whenever(kafkaTemplate).send(anyString(), anyString(), anyString())
-
-        kafkaMtbFileSender.send(MtbFileSender.MtbFileRequest("TestID", mtbFile(Consent.Status.ACTIVE)))
-
-        val captor = argumentCaptor<String>()
-        verify(kafkaTemplate, times(1)).send(anyString(), captor.capture(), captor.capture())
-        assertThat(captor.firstValue).isNotNull
-        assertThat(captor.firstValue).isEqualTo("{\"pid\": \"PID\"}")
-        assertThat(captor.secondValue).isNotNull
-        assertThat(captor.secondValue).isEqualTo(objectMapper.writeValueAsString(kafkaRecordData("TestID", Consent.Status.ACTIVE)))
-    }
-
-    @Test
-    fun shouldSendDeleteRequestWithCorrectKeyAndBody() {
-        doAnswer {
-            completedFuture(SendResult<String, String>(null, null))
-        }.whenever(kafkaTemplate).send(anyString(), anyString(), anyString())
-
-        kafkaMtbFileSender.send(MtbFileSender.DeleteRequest("TestID", "PID"))
-
-        val captor = argumentCaptor<String>()
-        verify(kafkaTemplate, times(1)).send(anyString(), captor.capture(), captor.capture())
-        assertThat(captor.firstValue).isNotNull
-        assertThat(captor.firstValue).isEqualTo("{\"pid\": \"PID\"}")
-        assertThat(captor.secondValue).isNotNull
-        assertThat(captor.secondValue).isEqualTo(objectMapper.writeValueAsString(kafkaRecordData("TestID", Consent.Status.REJECTED)))
-    }
-
         @ParameterizedTest
-    @MethodSource("requestWithResponseSource")
-    fun shouldRetryOnMtbFileKafkaSendError(testData: TestData) {
-        val kafkaProperties = KafkaProperties("testtopic")
-        val retryTemplate = RetryTemplateBuilder().customPolicy(SimpleRetryPolicy(3)).build()
-        this.kafkaMtbFileSender = KafkaMtbFileSender(this.kafkaTemplate, kafkaProperties, retryTemplate, this.objectMapper)
-
-        doAnswer {
-            if (null != testData.exception) {
-                throw testData.exception
-            }
-            completedFuture(SendResult<String, String>(null, null))
-        }.whenever(kafkaTemplate).send(anyString(), anyString(), anyString())
-
-        kafkaMtbFileSender.send(MtbFileSender.MtbFileRequest("TestID", mtbFile(Consent.Status.ACTIVE)))
-
-        val expectedCount = when (testData.exception) {
-            // OK - No Retry
-            null -> times(1)
-            // Request failed - Retry max 3 times
-            else -> times(3)
-        }
-
-        verify(kafkaTemplate, expectedCount).send(anyString(), anyString(), anyString())
-    }
-
-    @ParameterizedTest
-    @MethodSource("requestWithResponseSource")
+        @MethodSource("dev.dnpm.etl.processor.output.KafkaMtbFileSenderTest#requestWithResponseSource")
         fun shouldRetryOnDeleteKafkaSendError(testData: TestData) {
             val kafkaProperties = KafkaProperties("testtopic")
             val retryTemplate = RetryTemplateBuilder().customPolicy(SimpleRetryPolicy(3)).build()
@@ -160,9 +97,9 @@ class KafkaMtbFileSenderTest {
                     throw testData.exception
                 }
                 completedFuture(SendResult<String, String>(null, null))
-        }.whenever(kafkaTemplate).send(anyString(), anyString(), anyString())
+            }.whenever(kafkaTemplate).send(any<ProducerRecord<String, String>>())
 
-        kafkaMtbFileSender.send(MtbFileSender.DeleteRequest("TestID", "PID"))
+            kafkaMtbFileSender.send(DeleteRequest(TEST_REQUEST_ID, TEST_PATIENT_PSEUDONYM))
 
             val expectedCount = when (testData.exception) {
                 // OK - No Retry
@@ -171,47 +108,122 @@ class KafkaMtbFileSenderTest {
                 else -> times(3)
             }
 
-        verify(kafkaTemplate, expectedCount).send(anyString(), anyString(), anyString())
+            verify(kafkaTemplate, expectedCount).send(any<ProducerRecord<String, String>>())
+        }
+
+    }
+
+    @Nested
+    inner class DnpmV2Record {
+
+        private lateinit var kafkaTemplate: KafkaTemplate<String, String>
+
+        private lateinit var kafkaMtbFileSender: KafkaMtbFileSender
+
+        private lateinit var objectMapper: ObjectMapper
+
+        @BeforeEach
+        fun setup(
+            @Mock kafkaTemplate: KafkaTemplate<String, String>
+        ) {
+            val kafkaProperties = KafkaProperties("testtopic")
+            val retryTemplate = RetryTemplateBuilder().customPolicy(SimpleRetryPolicy(1)).build()
+
+            this.objectMapper = ObjectMapper()
+            this.kafkaTemplate = kafkaTemplate
+
+            this.kafkaMtbFileSender = KafkaMtbFileSender(kafkaTemplate, kafkaProperties, retryTemplate, objectMapper)
+        }
+
+        @ParameterizedTest
+        @MethodSource("dev.dnpm.etl.processor.output.KafkaMtbFileSenderTest#requestWithResponseSource")
+        fun shouldSendMtbFileRequestAndReturnExpectedState(testData: TestData) {
+            doAnswer {
+                if (null != testData.exception) {
+                    throw testData.exception
+                }
+                completedFuture(SendResult<String, String>(null, null))
+            }.whenever(kafkaTemplate).send(any<ProducerRecord<String, String>>())
+
+            val response = kafkaMtbFileSender.send(DnpmV2MtbFileRequest(TEST_REQUEST_ID, dnpmV2MtbFile()))
+            assertThat(response.status).isEqualTo(testData.requestStatus)
+        }
+
+        @Test
+        fun shouldSendMtbFileRequestWithCorrectKeyAndHeaderAndBody() {
+            doAnswer {
+                completedFuture(SendResult<String, String>(null, null))
+            }.whenever(kafkaTemplate).send(any<ProducerRecord<String, String>>())
+
+            kafkaMtbFileSender.send(DnpmV2MtbFileRequest(TEST_REQUEST_ID, dnpmV2MtbFile()))
+
+            val captor = argumentCaptor<ProducerRecord<String, String>>()
+            verify(kafkaTemplate, times(1)).send(captor.capture())
+            assertThat(captor.firstValue.key()).isNotNull
+            assertThat(captor.firstValue.key()).isEqualTo("{\"pid\": \"PID\"}")
+            assertThat(captor.firstValue.headers().headers("contentType")).isNotNull
+            assertThat(captor.firstValue.headers().headers("contentType")?.firstOrNull()?.value()).isEqualTo(CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON_VALUE.toByteArray())
+            assertThat(captor.firstValue.value()).isNotNull
+            assertThat(captor.firstValue.value()).isEqualTo(objectMapper.writeValueAsString(dnmpV2kafkaRecordData(TEST_REQUEST_ID)))
+        }
+
+        @ParameterizedTest
+        @MethodSource("dev.dnpm.etl.processor.output.KafkaMtbFileSenderTest#requestWithResponseSource")
+        fun shouldRetryOnMtbFileKafkaSendError(testData: TestData) {
+            val kafkaProperties = KafkaProperties("testtopic")
+            val retryTemplate = RetryTemplateBuilder().customPolicy(SimpleRetryPolicy(3)).build()
+            this.kafkaMtbFileSender = KafkaMtbFileSender(this.kafkaTemplate, kafkaProperties, retryTemplate, this.objectMapper)
+
+            doAnswer {
+                if (null != testData.exception) {
+                    throw testData.exception
+                }
+                completedFuture(SendResult<String, String>(null, null))
+            }.whenever(kafkaTemplate).send(any<ProducerRecord<String, String>>())
+
+            kafkaMtbFileSender.send(DnpmV2MtbFileRequest(TEST_REQUEST_ID, dnpmV2MtbFile()))
+
+            val expectedCount = when (testData.exception) {
+                // OK - No Retry
+                null -> times(1)
+                // Request failed - Retry max 3 times
+                else -> times(3)
+            }
+
+            verify(kafkaTemplate, expectedCount).send(any<ProducerRecord<String, String>>())
+        }
+
     }
 
     companion object {
-        fun mtbFile(consentStatus: Consent.Status): MtbFile {
-            return if (consentStatus == Consent.Status.ACTIVE) {
-                MtbFile.builder()
-                    .withPatient(
-                        Patient.builder()
-                            .withId("PID")
-                            .withBirthDate("2000-08-08")
-                            .withGender(Patient.Gender.MALE)
-                            .build()
+        val TEST_REQUEST_ID = RequestId("TestId")
+        val TEST_PATIENT_PSEUDONYM = PatientPseudonym("PID")
+
+        fun dnpmV2MtbFile(): Mtb {
+            return Mtb().apply {
+                this.patient = dev.pcvolkmer.mv64e.mtb.Patient().apply {
+                    this.id = "PID"
+                    this.birthDate = Date.from(Instant.now())
+                    this.gender = GenderCoding().apply {
+                        this.code = GenderCodingCode.MALE
+                    }
+                }
+                this.episodesOfCare = listOf(
+                    MtbEpisodeOfCare().apply {
+                        this.id = "1"
+                        this.patient = Reference().apply {
+                            this.id = "PID"
+                        }
+                        this.period = PeriodDate().apply {
+                            this.start = Date.from(Instant.now())
+                        }
+                    }
                 )
-                    .withConsent(
-                        Consent.builder()
-                            .withId("1")
-                            .withStatus(consentStatus)
-                            .withPatient("PID")
-                            .build()
-                    )
-                    .withEpisode(
-                        Episode.builder()
-                            .withId("1")
-                            .withPatient("PID")
-                            .withPeriod(PeriodStart("2023-08-08"))
-                            .build()
-                    )
-            } else {
-                MtbFile.builder()
-                    .withConsent(
-                        Consent.builder()
-                            .withStatus(consentStatus)
-                            .withPatient("PID")
-                            .build()
-                    )
-            }.build()
+            }
         }
 
-        fun kafkaRecordData(requestId: String, consentStatus: Consent.Status): KafkaMtbFileSender.Data {
-            return KafkaMtbFileSender.Data(requestId, mtbFile(consentStatus))
+        fun dnmpV2kafkaRecordData(requestId: RequestId): MtbRequest {
+            return DnpmV2MtbFileRequest(requestId, dnpmV2MtbFile())
         }
 
         data class TestData(val requestStatus: RequestStatus, val exception: Throwable? = null)

src/test/kotlin/dev/dnpm/etl/processor/output/RestDipMtbFileSenderTest.kt

@@ -0,0 +1,313 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.output
+
+import com.fasterxml.jackson.databind.ObjectMapper
+import com.fasterxml.jackson.module.kotlin.KotlinModule
+import dev.dnpm.etl.processor.CustomMediaType
+import dev.dnpm.etl.processor.PatientPseudonym
+import dev.dnpm.etl.processor.RequestId
+import dev.dnpm.etl.processor.config.AppConfigProperties
+import dev.dnpm.etl.processor.config.AppConfiguration
+import dev.dnpm.etl.processor.config.RestTargetProperties
+import dev.dnpm.etl.processor.monitoring.ReportService
+import dev.dnpm.etl.processor.monitoring.RequestStatus
+import dev.pcvolkmer.mv64e.mtb.*
+import org.assertj.core.api.Assertions.assertThat
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Nested
+import org.junit.jupiter.params.ParameterizedTest
+import org.junit.jupiter.params.provider.MethodSource
+import org.springframework.http.HttpHeaders
+import org.springframework.http.HttpMethod
+import org.springframework.http.HttpStatus
+import org.springframework.http.MediaType
+import org.springframework.retry.backoff.NoBackOffPolicy
+import org.springframework.retry.policy.SimpleRetryPolicy
+import org.springframework.retry.support.RetryTemplateBuilder
+import org.springframework.test.web.client.ExpectedCount
+import org.springframework.test.web.client.MockRestServiceServer
+import org.springframework.test.web.client.match.MockRestRequestMatchers.*
+import org.springframework.test.web.client.response.MockRestResponseCreators.withStatus
+import org.springframework.web.client.RestTemplate
+import java.time.Instant
+import java.util.*
+
+class RestDipMtbFileSenderTest {
+
+    @Nested
+    inner class DnpmV2ContentRequest {
+
+        private lateinit var mockRestServiceServer: MockRestServiceServer
+
+        private lateinit var restMtbFileSender: RestMtbFileSender
+
+        private var reportService = ReportService(ObjectMapper().registerModule(KotlinModule.Builder().build()))
+
+        @BeforeEach
+        fun setup() {
+            val restTemplate = RestTemplate()
+            val restTargetProperties = RestTargetProperties("http://localhost:9000/api", null, null)
+            val retryTemplate = RetryTemplateBuilder().customPolicy(SimpleRetryPolicy(1)).build()
+
+            this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate)
+
+            this.restMtbFileSender = RestDipMtbFileSender(restTemplate, restTargetProperties, retryTemplate, reportService)
+        }
+
+        @ParameterizedTest
+        @MethodSource("dev.dnpm.etl.processor.output.RestDipMtbFileSenderTest#mtbFileRequestWithResponseSource")
+        fun shouldReturnExpectedResponseForDnpmV2MtbFilePost(requestWithResponse: RequestWithResponse) {
+            this.mockRestServiceServer
+                .expect(method(HttpMethod.POST))
+                .andExpect(requestTo("http://localhost:9000/api/mtb/etl/patient-record"))
+                .andExpect(header(HttpHeaders.CONTENT_TYPE, CustomMediaType.APPLICATION_VND_DNPM_V2_MTB_JSON_VALUE))
+                .andRespond {
+                    withStatus(requestWithResponse.httpStatus).body(requestWithResponse.body).createResponse(it)
+                }
+
+            val response = restMtbFileSender.send(DnpmV2MtbFileRequest(TEST_REQUEST_ID, dnpmV2MtbFile()))
+            assertThat(response.status).isEqualTo(requestWithResponse.response.status)
+            assertThat(response.body).isEqualTo(requestWithResponse.response.body)
+        }
+
+    }
+
+    @Nested
+    inner class DeleteRequest {
+
+        private lateinit var mockRestServiceServer: MockRestServiceServer
+
+        private lateinit var restMtbFileSender: RestMtbFileSender
+
+        private var reportService = ReportService(ObjectMapper().registerModule(KotlinModule.Builder().build()))
+
+        @BeforeEach
+        fun setup() {
+            val restTemplate = RestTemplate()
+            val restTargetProperties = RestTargetProperties("http://localhost:9000/api", null, null)
+            val retryTemplate = RetryTemplateBuilder().customPolicy(SimpleRetryPolicy(1)).build()
+
+            this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate)
+
+            this.restMtbFileSender =
+                RestDipMtbFileSender(restTemplate, restTargetProperties, retryTemplate, reportService)
+        }
+
+        @ParameterizedTest
+        @MethodSource("dev.dnpm.etl.processor.output.RestDipMtbFileSenderTest#deleteRequestWithResponseSource")
+        fun shouldReturnExpectedResponseForDelete(requestWithResponse: RequestWithResponse) {
+            this.mockRestServiceServer
+                .expect(method(HttpMethod.DELETE))
+                .andExpect(requestTo("http://localhost:9000/api/mtb/etl/patient/${TEST_PATIENT_PSEUDONYM.value}"))
+                .andRespond {
+                    withStatus(requestWithResponse.httpStatus).body(requestWithResponse.body).createResponse(it)
+                }
+
+            val response = restMtbFileSender.send(DeleteRequest(TEST_REQUEST_ID, TEST_PATIENT_PSEUDONYM))
+            assertThat(response.status).isEqualTo(requestWithResponse.response.status)
+            assertThat(response.body).isEqualTo(requestWithResponse.response.body)
+        }
+
+        @ParameterizedTest
+        @MethodSource("dev.dnpm.etl.processor.output.RestDipMtbFileSenderTest#deleteRequestWithResponseSource")
+        fun shouldRetryOnDeleteHttpRequestError(requestWithResponse: RequestWithResponse) {
+            val restTemplate = RestTemplate()
+            val restTargetProperties = RestTargetProperties("http://localhost:9000/api", null, null)
+            val retryTemplate = AppConfiguration().retryTemplate(AppConfigProperties())
+            retryTemplate.setBackOffPolicy(NoBackOffPolicy())
+
+            this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate)
+            this.restMtbFileSender =
+                RestDipMtbFileSender(restTemplate, restTargetProperties, retryTemplate, reportService)
+
+            val expectedCount = when (requestWithResponse.httpStatus) {
+                // OK - No Retry
+                HttpStatus.OK, HttpStatus.CREATED, HttpStatus.UNPROCESSABLE_ENTITY, HttpStatus.BAD_REQUEST -> ExpectedCount.max(
+                    1
+                )
+                // Request failed - Retry max 3 times
+                else -> ExpectedCount.max(3)
+            }
+
+            this.mockRestServiceServer
+                .expect(expectedCount, method(HttpMethod.DELETE))
+                .andExpect(requestTo("http://localhost:9000/api/mtb/etl/patient/${TEST_PATIENT_PSEUDONYM.value}"))
+                .andRespond {
+                    withStatus(requestWithResponse.httpStatus).body(requestWithResponse.body).createResponse(it)
+                }
+
+            val response = restMtbFileSender.send(DeleteRequest(TEST_REQUEST_ID, TEST_PATIENT_PSEUDONYM))
+            assertThat(response.status).isEqualTo(requestWithResponse.response.status)
+            assertThat(response.body).isEqualTo(requestWithResponse.response.body)
+        }
+
+    }
+
+    companion object {
+        data class RequestWithResponse(
+            val httpStatus: HttpStatus,
+            val body: String,
+            val response: MtbFileSender.Response
+        )
+
+        val TEST_REQUEST_ID = RequestId("TestId")
+        val TEST_PATIENT_PSEUDONYM = PatientPseudonym("PID")
+
+        fun dnpmV2MtbFile(): Mtb {
+            return Mtb().apply {
+                this.patient = dev.pcvolkmer.mv64e.mtb.Patient().apply {
+                    this.id = "PID"
+                    this.birthDate = Date.from(Instant.now())
+                    this.gender = GenderCoding().apply {
+                        this.code = GenderCodingCode.MALE
+                    }
+                }
+                this.episodesOfCare = listOf(
+                    MtbEpisodeOfCare().apply {
+                        this.id = "1"
+                        this.patient = Reference().apply {
+                            this.id = "PID"
+                        }
+                        this.period = PeriodDate().apply {
+                            this.start = Date.from(Instant.now())
+                        }
+                    }
+                )
+            }
+        }
+
+        private const val ERROR_RESPONSE_BODY = "Sonstiger Fehler bei der Übertragung"
+
+        /**
+         * Synthetic http responses with related request status
+         * Also see: https://ibmi-intra.cs.uni-tuebingen.de/display/ZPM/bwHC+REST+API
+         */
+        @JvmStatic
+        fun mtbFileRequestWithResponseSource(): Set<RequestWithResponse> {
+            return setOf(
+                RequestWithResponse(
+                    HttpStatus.OK,
+                    responseBodyWithMaxSeverity(ReportService.Severity.INFO),
+                    MtbFileSender.Response(
+                        RequestStatus.SUCCESS,
+                        responseBodyWithMaxSeverity(ReportService.Severity.INFO)
+                    )
+                ),
+                RequestWithResponse(
+                    HttpStatus.CREATED,
+                    responseBodyWithMaxSeverity(ReportService.Severity.WARNING),
+                    MtbFileSender.Response(RequestStatus.WARNING, responseBodyWithMaxSeverity(ReportService.Severity.WARNING))
+                ),
+                RequestWithResponse(
+                    HttpStatus.BAD_REQUEST,
+                    responseBodyWithMaxSeverity(ReportService.Severity.ERROR),
+                    MtbFileSender.Response(RequestStatus.ERROR, responseBodyWithMaxSeverity(ReportService.Severity.ERROR))
+                ),
+                RequestWithResponse(
+                    HttpStatus.UNPROCESSABLE_ENTITY,
+                    responseBodyWithMaxSeverity(ReportService.Severity.ERROR),
+                    MtbFileSender.Response(RequestStatus.ERROR, responseBodyWithMaxSeverity(ReportService.Severity.ERROR))
+                ),
+                // Some more errors not mentioned in documentation
+                RequestWithResponse(
+                    HttpStatus.NOT_FOUND,
+                    ERROR_RESPONSE_BODY,
+                    MtbFileSender.Response(RequestStatus.ERROR, ERROR_RESPONSE_BODY)
+                ),
+                RequestWithResponse(
+                    HttpStatus.INTERNAL_SERVER_ERROR,
+                    ERROR_RESPONSE_BODY,
+                    MtbFileSender.Response(RequestStatus.ERROR, ERROR_RESPONSE_BODY)
+                )
+            )
+        }
+
+        /**
+         * Synthetic http responses with related request status
+         * Also see: https://ibmi-intra.cs.uni-tuebingen.de/display/ZPM/bwHC+REST+API
+         */
+        @JvmStatic
+        fun deleteRequestWithResponseSource(): Set<RequestWithResponse> {
+            return setOf(
+                RequestWithResponse(HttpStatus.OK, "", MtbFileSender.Response(RequestStatus.SUCCESS)),
+                // Some more errors not mentioned in documentation
+                RequestWithResponse(
+                    HttpStatus.NOT_FOUND,
+                    "what????",
+                    MtbFileSender.Response(RequestStatus.ERROR, ERROR_RESPONSE_BODY)
+                ),
+                RequestWithResponse(
+                    HttpStatus.INTERNAL_SERVER_ERROR,
+                    "what????",
+                    MtbFileSender.Response(RequestStatus.ERROR, ERROR_RESPONSE_BODY)
+                )
+            )
+        }
+
+        fun responseBodyWithMaxSeverity(severity: ReportService.Severity): String {
+            return when (severity) {
+                ReportService.Severity.INFO -> """
+                        {
+                            "patient": "PID",
+                            "issues": [
+                                { "severity": "info", "message": "Info Message" }
+                            ]
+                        }
+                    """
+
+                ReportService.Severity.WARNING -> """
+                        {
+                            "patient": "PID",
+                            "issues": [
+                                { "severity": "info", "message": "Info Message" },
+                                { "severity": "warning", "message": "Warning Message" }
+                            ]
+                        }
+                    """
+
+                ReportService.Severity.ERROR -> """
+                        {
+                            "patient": "PID",
+                            "issues": [
+                                { "severity": "info", "message": "Info Message" },
+                                { "severity": "warning", "message": "Warning Message" },
+                                { "severity": "error", "message": "Error Message" }
+                            ]
+                        }
+                    """
+
+                ReportService.Severity.FATAL -> """
+                        {
+                            "patient": "PID",
+                            "issues": [
+                                { "severity": "info", "message": "Info Message" },
+                                { "severity": "warning", "message": "Warning Message" },
+                                { "severity": "error", "message": "Error Message" },
+                                { "severity": "fatal", "message": "Fatal Message" }
+                            ]
+                        }
+                    """
+            }
+        }
+    }
+
+
+}

src/test/kotlin/dev/dnpm/etl/processor/output/RestMtbFileSenderTest.kt

@@ -1,257 +0,0 @@
-/*
- * This file is part of ETL-Processor
- *
- * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
- *
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Affero General Public License as published
- * by the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU Affero General Public License for more details.
- *
- * You should have received a copy of the GNU Affero General Public License
- * along with this program.  If not, see <https://www.gnu.org/licenses/>.
- */
-
-package dev.dnpm.etl.processor.output
-
-import de.ukw.ccc.bwhc.dto.*
-import dev.dnpm.etl.processor.config.RestTargetProperties
-import dev.dnpm.etl.processor.monitoring.RequestStatus
-import org.assertj.core.api.Assertions.assertThat
-import org.junit.jupiter.api.BeforeEach
-import org.junit.jupiter.params.ParameterizedTest
-import org.junit.jupiter.params.provider.MethodSource
-import org.springframework.http.HttpMethod
-import org.springframework.http.HttpStatus
-import org.springframework.retry.policy.SimpleRetryPolicy
-import org.springframework.retry.support.RetryTemplateBuilder
-import org.springframework.test.web.client.ExpectedCount
-import org.springframework.test.web.client.MockRestServiceServer
-import org.springframework.test.web.client.match.MockRestRequestMatchers.method
-import org.springframework.test.web.client.match.MockRestRequestMatchers.requestTo
-import org.springframework.test.web.client.response.MockRestResponseCreators.withStatus
-import org.springframework.web.client.RestTemplate
-
-class RestMtbFileSenderTest {
-
-    private lateinit var mockRestServiceServer: MockRestServiceServer
-
-    private lateinit var restMtbFileSender: RestMtbFileSender
-
-    @BeforeEach
-    fun setup() {
-        val restTemplate = RestTemplate()
-        val restTargetProperties = RestTargetProperties("http://localhost:9000/mtbfile")
-        val retryTemplate = RetryTemplateBuilder().customPolicy(SimpleRetryPolicy(1)).build()
-
-        this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate)
-
-        this.restMtbFileSender = RestMtbFileSender(restTemplate, restTargetProperties, retryTemplate)
-    }
-
-    @ParameterizedTest
-    @MethodSource("deleteRequestWithResponseSource")
-    fun shouldReturnExpectedResponseForDelete(requestWithResponse: RequestWithResponse) {
-        this.mockRestServiceServer.expect {
-            method(HttpMethod.DELETE)
-            requestTo("/mtbfile")
-        }.andRespond {
-            withStatus(requestWithResponse.httpStatus).body(requestWithResponse.body).createResponse(it)
-        }
-
-        val response = restMtbFileSender.send(MtbFileSender.DeleteRequest("TestID", "PID"))
-        assertThat(response.status).isEqualTo(requestWithResponse.response.status)
-        assertThat(response.body).isEqualTo(requestWithResponse.response.body)
-    }
-
-    @ParameterizedTest
-    @MethodSource("mtbFileRequestWithResponseSource")
-    fun shouldReturnExpectedResponseForMtbFilePost(requestWithResponse: RequestWithResponse) {
-        this.mockRestServiceServer.expect {
-            method(HttpMethod.POST)
-            requestTo("/mtbfile")
-        }.andRespond {
-            withStatus(requestWithResponse.httpStatus).body(requestWithResponse.body).createResponse(it)
-        }
-
-        val response = restMtbFileSender.send(MtbFileSender.MtbFileRequest("TestID", mtbFile))
-        assertThat(response.status).isEqualTo(requestWithResponse.response.status)
-        assertThat(response.body).isEqualTo(requestWithResponse.response.body)
-    }
-
-    @ParameterizedTest
-    @MethodSource("mtbFileRequestWithResponseSource")
-    fun shouldRetryOnMtbFileHttpRequestError(requestWithResponse: RequestWithResponse) {
-        val restTemplate = RestTemplate()
-        val restTargetProperties = RestTargetProperties("http://localhost:9000/mtbfile")
-        val retryTemplate = RetryTemplateBuilder().customPolicy(SimpleRetryPolicy(3)).build()
-
-        this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate)
-        this.restMtbFileSender = RestMtbFileSender(restTemplate, restTargetProperties, retryTemplate)
-
-        val expectedCount = when (requestWithResponse.httpStatus) {
-            // OK - No Retry
-            HttpStatus.OK, HttpStatus.CREATED -> ExpectedCount.max(1)
-            // Request failed - Retry max 3 times
-            else -> ExpectedCount.max(3)
-        }
-
-        this.mockRestServiceServer.expect(expectedCount) {
-            method(HttpMethod.POST)
-            requestTo("/mtbfile")
-        }.andRespond {
-            withStatus(requestWithResponse.httpStatus).body(requestWithResponse.body).createResponse(it)
-        }
-
-        val response = restMtbFileSender.send(MtbFileSender.MtbFileRequest("TestID", mtbFile))
-        assertThat(response.status).isEqualTo(requestWithResponse.response.status)
-        assertThat(response.body).isEqualTo(requestWithResponse.response.body)
-    }
-
-    @ParameterizedTest
-    @MethodSource("deleteRequestWithResponseSource")
-    fun shouldRetryOnDeleteHttpRequestError(requestWithResponse: RequestWithResponse) {
-        val restTemplate = RestTemplate()
-        val restTargetProperties = RestTargetProperties("http://localhost:9000/mtbfile")
-        val retryTemplate = RetryTemplateBuilder().customPolicy(SimpleRetryPolicy(3)).build()
-
-        this.mockRestServiceServer = MockRestServiceServer.createServer(restTemplate)
-        this.restMtbFileSender = RestMtbFileSender(restTemplate, restTargetProperties, retryTemplate)
-
-        val expectedCount = when (requestWithResponse.httpStatus) {
-            // OK - No Retry
-            HttpStatus.OK, HttpStatus.CREATED -> ExpectedCount.max(1)
-            // Request failed - Retry max 3 times
-            else -> ExpectedCount.max(3)
-        }
-
-        this.mockRestServiceServer.expect(expectedCount) {
-            method(HttpMethod.DELETE)
-            requestTo("/mtbfile")
-        }.andRespond {
-            withStatus(requestWithResponse.httpStatus).body(requestWithResponse.body).createResponse(it)
-        }
-
-        val response = restMtbFileSender.send(MtbFileSender.DeleteRequest("TestID", "PID"))
-        assertThat(response.status).isEqualTo(requestWithResponse.response.status)
-        assertThat(response.body).isEqualTo(requestWithResponse.response.body)
-    }
-
-    companion object {
-        data class RequestWithResponse(
-            val httpStatus: HttpStatus,
-            val body: String,
-            val response: MtbFileSender.Response
-        )
-
-        private val warningBody = """
-                {
-                    "patient_id": "PID",
-                    "issues": [
-                        { "severity": "warning", "message": "Something is not right" }
-                    ]
-                }
-            """.trimIndent()
-
-        private val errorBody = """
-                {
-                    "patient_id": "PID",
-                    "issues": [
-                        { "severity": "error", "message": "Something is very bad" }
-                    ]
-                }
-            """.trimIndent()
-
-        val mtbFile: MtbFile = MtbFile.builder()
-            .withPatient(
-                Patient.builder()
-                    .withId("PID")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
-                    .build()
-            )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.ACTIVE)
-                    .withPatient("PID")
-                    .build()
-            )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("PID")
-                    .withPeriod(PeriodStart("2023-08-08"))
-                    .build()
-            )
-            .build()
-
-        private const val ERROR_RESPONSE_BODY = "Sonstiger Fehler bei der Übertragung"
-
-        /**
-         * Synthetic http responses with related request status
-         * Also see: https://ibmi-intra.cs.uni-tuebingen.de/display/ZPM/bwHC+REST+API
-         */
-        @JvmStatic
-        fun mtbFileRequestWithResponseSource(): Set<RequestWithResponse> {
-            return setOf(
-                RequestWithResponse(HttpStatus.OK, "{}", MtbFileSender.Response(RequestStatus.SUCCESS, "{}")),
-                RequestWithResponse(
-                    HttpStatus.CREATED,
-                    warningBody,
-                    MtbFileSender.Response(RequestStatus.WARNING, warningBody)
-                ),
-                RequestWithResponse(
-                    HttpStatus.BAD_REQUEST,
-                    "??",
-                    MtbFileSender.Response(RequestStatus.ERROR, ERROR_RESPONSE_BODY)
-                ),
-                RequestWithResponse(
-                    HttpStatus.UNPROCESSABLE_ENTITY,
-                    errorBody,
-                    MtbFileSender.Response(RequestStatus.ERROR, ERROR_RESPONSE_BODY)
-                ),
-                // Some more errors not mentioned in documentation
-                RequestWithResponse(
-                    HttpStatus.NOT_FOUND,
-                    "what????",
-                    MtbFileSender.Response(RequestStatus.ERROR, ERROR_RESPONSE_BODY)
-                ),
-                RequestWithResponse(
-                    HttpStatus.INTERNAL_SERVER_ERROR,
-                    "what????",
-                    MtbFileSender.Response(RequestStatus.ERROR, ERROR_RESPONSE_BODY)
-                )
-            )
-        }
-
-        /**
-         * Synthetic http responses with related request status
-         * Also see: https://ibmi-intra.cs.uni-tuebingen.de/display/ZPM/bwHC+REST+API
-         */
-        @JvmStatic
-        fun deleteRequestWithResponseSource(): Set<RequestWithResponse> {
-            return setOf(
-                RequestWithResponse(HttpStatus.OK, "", MtbFileSender.Response(RequestStatus.SUCCESS)),
-                // Some more errors not mentioned in documentation
-                RequestWithResponse(
-                    HttpStatus.NOT_FOUND,
-                    "what????",
-                    MtbFileSender.Response(RequestStatus.ERROR, ERROR_RESPONSE_BODY)
-                ),
-                RequestWithResponse(
-                    HttpStatus.INTERNAL_SERVER_ERROR,
-                    "what????",
-                    MtbFileSender.Response(RequestStatus.ERROR, ERROR_RESPONSE_BODY)
-                )
-            )
-        }
-    }
-
-
-}

src/test/kotlin/dev/dnpm/etl/processor/pseudonym/ExtensionsTest.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2023  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -19,32 +19,49 @@
 
 package dev.dnpm.etl.processor.pseudonym
 
+import ca.uhn.fhir.context.FhirContext
 import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.*
+import dev.dnpm.etl.processor.config.AppConfigProperties
+import dev.dnpm.etl.processor.config.GIcsConfigProperties
+import dev.dnpm.etl.processor.config.JacksonConfig
+import dev.dnpm.etl.processor.consent.MtbFileConsentService
+import dev.dnpm.etl.processor.services.ConsentProcessor
+import dev.dnpm.etl.processor.services.ConsentProcessorTest
+import dev.pcvolkmer.mv64e.mtb.*
 import org.assertj.core.api.Assertions.assertThat
+import org.hl7.fhir.r4.model.Bundle
+import org.junit.jupiter.api.Nested
 import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.assertThrows
 import org.junit.jupiter.api.extension.ExtendWith
-import org.mockito.ArgumentMatchers
 import org.mockito.Mock
 import org.mockito.junit.jupiter.MockitoExtension
+import org.mockito.kotlin.anyValueClass
 import org.mockito.kotlin.doAnswer
 import org.mockito.kotlin.whenever
 import org.springframework.core.io.ClassPathResource
-
-const val FAKE_MTB_FILE_PATH = "fake_MTBFile.json"
-const val CLEAN_PATIENT_ID = "5dad2f0b-49c6-47d8-a952-7b9e9e0f7549"
+import java.time.Instant
+import java.util.*
 
 @ExtendWith(MockitoExtension::class)
 class ExtensionsTest {
-
-    private fun fakeMtbFile(): MtbFile {
-        val mtbFile = ClassPathResource(FAKE_MTB_FILE_PATH).inputStream
-        return ObjectMapper().readValue(mtbFile, MtbFile::class.java)
+    fun getObjectMapper(): ObjectMapper {
+        return JacksonConfig().objectMapper()
     }
 
-    private fun MtbFile.serialized(): String {
-        return ObjectMapper().writeValueAsString(this)
+    @Nested
+    inner class UsingDnpmV2Datamodel {
+
+        val FAKE_MTB_FILE_PATH = "mv64e-mtb-fake-patient.json"
+        val CLEAN_PATIENT_ID = "644bae7a-56f6-4ee8-b02f-c532e65af5b1"
+
+        private fun fakeMtbFile(): Mtb {
+            val mtbFile = ClassPathResource(FAKE_MTB_FILE_PATH).inputStream
+            return getObjectMapper().readValue(mtbFile, Mtb::class.java)
+        }
+
+        private fun Mtb.serialized(): String {
+            return getObjectMapper().writeValueAsString(this)
         }
 
         @Test
@@ -52,9 +69,11 @@ class ExtensionsTest {
             doAnswer {
                 it.arguments[0]
                 "PSEUDO-ID"
-        }.whenever(pseudonymizeService).patientPseudonym(ArgumentMatchers.anyString())
+            }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
             val mtbFile = fakeMtbFile()
+            mtbFile.ensureMetaDataIsInitialized()
+            addConsentData(mtbFile)
 
             mtbFile.pseudonymizeWith(pseudonymizeService)
 
@@ -62,76 +81,23 @@ class ExtensionsTest {
             assertThat(mtbFile.serialized()).doesNotContain(CLEAN_PATIENT_ID)
         }
 
-    @Test
-    fun shouldNotContainAnyUuidAfterRehashingOfIds(@Mock pseudonymizeService: PseudonymizeService) {
-        doAnswer {
-            it.arguments[0]
-            "PSEUDO-ID"
-        }.whenever(pseudonymizeService).patientPseudonym(ArgumentMatchers.anyString())
+        private fun addConsentData(mtbFile: Mtb) {
+            val gIcsConfigProperties = GIcsConfigProperties("", "", "")
+            val appConfigProperties = AppConfigProperties(emptyList())
 
-        doAnswer {
-            "TESTDOMAIN"
-        }.whenever(pseudonymizeService).prefix()
+            val bundle = Bundle()
+            val dummyConsent = ConsentProcessorTest.getDummyGenomDeConsent()
+            dummyConsent.patient.reference = "Patient/$CLEAN_PATIENT_ID"
+            bundle.addEntry().resource = dummyConsent
 
-        val mtbFile = fakeMtbFile()
+            ConsentProcessor(
+                appConfigProperties,
+                gIcsConfigProperties,
+                JacksonConfig().objectMapper(),
+                FhirContext.forR4(),
+                MtbFileConsentService()
+            ).embedBroadConsentResources(mtbFile, bundle)
 
-        mtbFile.pseudonymizeWith(pseudonymizeService)
-        mtbFile.anonymizeContentWith(pseudonymizeService)
-
-        val pattern = "\"[a-f0-9]{8}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{12}\"".toRegex().toPattern()
-        val matcher = pattern.matcher(mtbFile.serialized())
-
-        assertThrows<IllegalStateException> {
-            matcher.find()
-            matcher.group()
-        }.also {
-            assertThat(it.message).isEqualTo("No match found")
-        }
-
-    }
-
-    @Test
-    fun shouldRehashIdsWithPrefix(@Mock pseudonymizeService: PseudonymizeService) {
-        doAnswer {
-            it.arguments[0]
-            "PSEUDO-ID"
-        }.whenever(pseudonymizeService).patientPseudonym(ArgumentMatchers.anyString())
-
-        doAnswer {
-            "TESTDOMAIN"
-        }.whenever(pseudonymizeService).prefix()
-
-        val mtbFile = MtbFile.builder()
-            .withPatient(
-                Patient.builder()
-                    .withId("1")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
-                    .build()
-            )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.ACTIVE)
-                    .withPatient("123")
-                    .build()
-            )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("1")
-                    .withPeriod(PeriodStart("2023-08-08"))
-                    .build()
-            )
-            .build()
-
-        mtbFile.pseudonymizeWith(pseudonymizeService)
-        mtbFile.anonymizeContentWith(pseudonymizeService)
-
-
-       assertThat(mtbFile.episode.id)
-           // TESTDOMAIN<sha256(TESTDOMAIN-1)[0-41]>
-           .isEqualTo("TESTDOMAIN44e20a53bbbf9f3ae39626d05df7014dcd77d6098")
         }
 
         @Test
@@ -139,60 +105,96 @@ class ExtensionsTest {
             doAnswer {
                 it.arguments[0]
                 "PSEUDO-ID"
-        }.whenever(pseudonymizeService).patientPseudonym(ArgumentMatchers.anyString())
+            }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
             doAnswer {
                 "TESTDOMAIN"
             }.whenever(pseudonymizeService).prefix()
 
-        val mtbFile = MtbFile.builder()
-            .withPatient(
-                Patient.builder()
-                    .withId("1")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
-                    .build()
+            val mtbFile = Mtb().apply {
+                this.patient = dev.pcvolkmer.mv64e.mtb.Patient().apply {
+                    this.id = "PID"
+                    this.birthDate = Date.from(Instant.now())
+                    this.gender = GenderCoding().apply {
+                        this.code = GenderCodingCode.MALE
+                    }
+                }
+                this.episodesOfCare = listOf(
+                    MtbEpisodeOfCare().apply {
+                        this.id = "1"
+                        this.patient = Reference().apply {
+                            this.id = "PID"
+                        }
+                        this.period = PeriodDate().apply {
+                            this.start = Date.from(Instant.now())
+                        }
+                    }
                 )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.ACTIVE)
-                    .withPatient("123")
-                    .build()
-            )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("1")
-                    .withPeriod(PeriodStart("2023-08-08"))
-                    .build()
-            )
-            .withClaims(null)
-            .withDiagnoses(null)
-            .withCarePlans(null)
-            .withClaimResponses(null)
-            .withEcogStatus(null)
-            .withFamilyMemberDiagnoses(null)
-            .withGeneticCounsellingRequests(null)
-            .withHistologyReevaluationRequests(null)
-            .withHistologyReports(null)
-            .withLastGuidelineTherapies(null)
-            .withMolecularPathologyFindings(null)
-            .withMolecularTherapies(null)
-            .withNgsReports(null)
-            .withPreviousGuidelineTherapies(null)
-            .withRebiopsyRequests(null)
-            .withRecommendations(null)
-            .withResponses(null)
-            .withStudyInclusionRequests(null)
-            .withSpecimens(null)
-            .build()
+            }
 
             mtbFile.pseudonymizeWith(pseudonymizeService)
             mtbFile.anonymizeContentWith(pseudonymizeService)
 
-
-        assertThat(mtbFile.episode.id).isNotNull()
+            assertThat(mtbFile.episodesOfCare).hasSize(1)
+            assertThat(mtbFile.episodesOfCare.map { it.id }).isNotNull
         }
 
+        @Test
+        fun shouldNotContainAnyUuidAfterRehashingOfIds(@Mock pseudonymizeService: PseudonymizeService) {
+            doAnswer {
+                it.arguments[0]
+                "PSEUDO-ID"
+            }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
+
+            doAnswer {
+                "TESTDOMAIN"
+            }.whenever(pseudonymizeService).prefix()
+
+            val mtbFile = fakeMtbFile()
+
+            /**
+             * replace hex values with random long, so our test does not match false positives
+             */
+            mtbFile.ngsReports.forEach { report ->
+                report.results.simpleVariants.forEach { simpleVariant ->
+                    simpleVariant.externalIds.forEach { extIdValue ->
+                        extIdValue.value =
+                            Math.random().toLong().toString()
+                    }
+                }
+            }
+            mtbFile.ngsReports.forEach { report ->
+                report.results.rnaFusions.forEach { simpleVariant ->
+                    simpleVariant.externalIds.forEach { extIdValue ->
+                        extIdValue.value =
+                            Math.random().toLong().toString()
+                    }
+                    simpleVariant.fusionPartner3Prime?.transcriptId?.value =
+                        Math.random().toLong().toString()
+                    simpleVariant.fusionPartner5Prime?.transcriptId?.value =
+                        Math.random().toLong().toString()
+                    simpleVariant.externalIds?.forEach { it ->
+                        it?.value = Math.random().toLong().toString()
+                    }
+                }
+            }
+
+            mtbFile.pseudonymizeWith(pseudonymizeService)
+            mtbFile.anonymizeContentWith(pseudonymizeService)
+
+            val pattern =
+                "\"[a-f0-9]{8}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{4}-[a-f0-9]{12}\"".toRegex()
+                    .toPattern()
+            val input = mtbFile.serialized()
+            val matcher = pattern.matcher(input)
+
+            assertThrows<IllegalStateException> {
+                matcher.find()
+                val posSt = "check at pos: " + matcher.start().toString() + ", " + matcher.end()
+                println(posSt + " with " + matcher.group())
+            }.also {
+                assertThat(it.message).isEqualTo("No match found")
+            }
+        }
+    }
 }

src/test/kotlin/dev/dnpm/etl/processor/pseudonym/PseudonymizeServiceTest.kt

@@ -19,8 +19,8 @@
 
 package dev.dnpm.etl.processor.pseudonym
 
-import de.ukw.ccc.bwhc.dto.*
 import dev.dnpm.etl.processor.config.PseudonymizeConfigProperties
+import dev.pcvolkmer.mv64e.mtb.*
 import org.assertj.core.api.Assertions.assertThat
 import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.extension.ExtendWith
@@ -29,31 +29,26 @@ import org.mockito.Mock
 import org.mockito.junit.jupiter.MockitoExtension
 import org.mockito.kotlin.doAnswer
 import org.mockito.kotlin.whenever
+import java.time.Instant
+import java.util.*
 
 @ExtendWith(MockitoExtension::class)
 class PseudonymizeServiceTest {
 
-    private val mtbFile = MtbFile.builder()
-        .withPatient(
+    private val mtbFile = Mtb.builder()
+        .patient(
             Patient.builder()
-                .withId("123")
-                .withBirthDate("2000-08-08")
-                .withGender(Patient.Gender.MALE)
+                .id("123")
                 .build()
         )
-        .withConsent(
-            Consent.builder()
-                .withId("1")
-                .withStatus(Consent.Status.ACTIVE)
-                .withPatient("123")
+        .episodesOfCare(
+            listOf(
+                MtbEpisodeOfCare.builder()
+                    .id("1")
+                    .patient(Reference.builder().id("123").build())
+                    .period(PeriodDate.builder().start(Date.from(Instant.parse("2021-01-01T00:00:00.00Z"))).build())
                     .build()
             )
-        .withEpisode(
-            Episode.builder()
-                .withId("1")
-                .withPatient("123")
-                .withPeriod(PeriodStart("2023-08-08"))
-                .build()
         )
         .build()
 
@@ -71,7 +66,7 @@ class PseudonymizeServiceTest {
     }
 
     @Test
-    fun sanitizeFileName(@Mock generator: GpasPseudonymGenerator) {
+    fun sanitizeFileName() {
         val result = GpasPseudonymGenerator.sanitizeValue("l://a\\bs;1*2?3>")
 
         assertThat(result).isEqualTo("l___a_bs_1_2_3_")
@@ -90,4 +85,16 @@ class PseudonymizeServiceTest {
         assertThat(mtbFile.patient.id).isEqualTo("UNKNOWN_123")
     }
 
+    @Test
+    fun shouldReturnDifferentValues() {
+        val ag = AnonymizingGenerator()
+
+        val tans = HashSet<String>()
+
+        (1..1000).forEach { i ->
+            val tan = ag.generateGenomDeTan("12345")
+            assertThat(tan).hasSize(64)
+            assertThat(tans.add(tan)).`as`("never the same result!").isTrue
+        }
+    }
 }

src/test/kotlin/dev/dnpm/etl/processor/security/TokenServiceTest.kt

@@ -17,13 +17,12 @@
  * along with this program.  If not, see <https://www.gnu.org/licenses/>.
  */
 
-package dev.dnpm.etl.processor.services
+package dev.dnpm.etl.processor.security
 
 import org.assertj.core.api.Assertions.assertThat
 import org.junit.jupiter.api.BeforeEach
 import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.extension.ExtendWith
-import org.mockito.ArgumentCaptor
 import org.mockito.ArgumentMatchers.anyLong
 import org.mockito.ArgumentMatchers.anyString
 import org.mockito.Mock
@@ -96,11 +95,11 @@ class TokenServiceTest {
 
         val actual = this.tokenService.addToken("Test Token")
 
-        val captor = ArgumentCaptor.forClass(Token::class.java)
+        val captor = argumentCaptor<Token>()
         verify(tokenRepository, times(1)).save(captor.capture())
 
         assertThat(actual).satisfies(Consumer { assertThat(it.isSuccess).isTrue() })
-        assertThat(captor.value).satisfies(
+        assertThat(captor.firstValue).satisfies(
             Consumer { assertThat(it.name).isEqualTo("Test Token") },
             Consumer { assertThat(it.username).isEqualTo("testtoken") },
             Consumer { assertThat(it.password).isEqualTo("{test}verysecret") }
@@ -116,13 +115,13 @@ class TokenServiceTest {
 
         this.tokenService.deleteToken(42)
 
-        val stringCaptor = ArgumentCaptor.forClass(String::class.java)
+        val stringCaptor = argumentCaptor<String>()
         verify(userDetailsManager, times(1)).deleteUser(stringCaptor.capture())
-        assertThat(stringCaptor.value).isEqualTo("testtoken")
+        assertThat(stringCaptor.firstValue).isEqualTo("testtoken")
 
-        val tokenCaptor = ArgumentCaptor.forClass(Token::class.java)
+        val tokenCaptor = argumentCaptor<Token>()
         verify(tokenRepository, times(1)).delete(tokenCaptor.capture())
-        assertThat(tokenCaptor.value.id).isEqualTo(42)
+        assertThat(tokenCaptor.firstValue.id).isEqualTo(42)
     }
 
     @Test

src/test/kotlin/dev/dnpm/etl/processor/security/UserRoleServiceTest.kt

@@ -0,0 +1,202 @@
+/*
+ * This file is part of ETL-Processor
+ *
+ * Copyright (c) 2024  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published
+ * by the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU Affero General Public License
+ * along with this program.  If not, see <https://www.gnu.org/licenses/>.
+ */
+
+package dev.dnpm.etl.processor.security
+
+import org.assertj.core.api.Assertions.assertThat
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Nested
+import org.junit.jupiter.api.Test
+import org.junit.jupiter.api.extension.ExtendWith
+import org.mockito.Mock
+import org.mockito.junit.jupiter.MockitoExtension
+import org.mockito.kotlin.*
+import org.springframework.security.core.session.SessionInformation
+import org.springframework.security.core.session.SessionRegistry
+import org.springframework.security.oauth2.core.oidc.OidcIdToken
+import org.springframework.security.oauth2.core.oidc.user.DefaultOidcUser
+import org.springframework.security.oauth2.core.oidc.user.OidcUser
+import java.time.Instant
+import java.util.*
+
+@ExtendWith(MockitoExtension::class)
+class UserRoleServiceTest {
+
+    private lateinit var userRoleRepository: UserRoleRepository
+    private lateinit var sessionRegistry: SessionRegistry
+
+    private lateinit var userRoleService: UserRoleService
+
+    @BeforeEach
+    fun setup(
+        @Mock userRoleRepository: UserRoleRepository,
+        @Mock sessionRegistry: SessionRegistry
+    ) {
+        this.userRoleRepository = userRoleRepository
+        this.sessionRegistry = sessionRegistry
+
+        this.userRoleService = UserRoleService(userRoleRepository, sessionRegistry)
+    }
+
+    @Test
+    fun shouldDelegateFindAllToRepository() {
+        userRoleService.findAll()
+
+        verify(userRoleRepository, times(1)).findAll()
+    }
+
+    @Nested
+    inner class WithExistingUserRole {
+
+        @BeforeEach
+        fun setup() {
+            doAnswer { invocation ->
+                Optional.of(
+                    UserRole(invocation.getArgument(0), "patrick.tester", Role.USER)
+                )
+            }.whenever(userRoleRepository).findById(any<Long>())
+
+            doAnswer { _ ->
+                listOf(
+                    dummyPrincipal()
+                )
+            }.whenever(sessionRegistry).allPrincipals
+        }
+
+        @Test
+        fun shouldUpdateUserRole() {
+            userRoleService.updateUserRole(1, Role.ADMIN)
+
+            val userRoleCaptor = argumentCaptor<UserRole>()
+            verify(userRoleRepository, times(1)).save(userRoleCaptor.capture())
+
+            assertThat(userRoleCaptor.firstValue.id).isEqualTo(1L)
+            assertThat(userRoleCaptor.firstValue.role).isEqualTo(Role.ADMIN)
+        }
+
+        @Test
+        fun shouldExpireSessionOnUpdate() {
+            val dummySessions = dummySessions()
+            whenever(sessionRegistry.getAllSessions(any(), any<Boolean>())).thenReturn(
+                dummySessions
+            )
+
+            assertThat(dummySessions.filter { it.isExpired }).hasSize(0)
+
+            userRoleService.updateUserRole(1, Role.ADMIN)
+
+            verify(sessionRegistry, times(1)).getAllSessions(any<OidcUser>(), any<Boolean>())
+
+            assertThat(dummySessions.filter { it.isExpired }).hasSize(2)
+        }
+
+        @Test
+        fun shouldDeleteUserRole() {
+            userRoleService.deleteUserRole(1)
+
+            val userRoleCaptor = argumentCaptor<UserRole>()
+            verify(userRoleRepository, times(1)).delete(userRoleCaptor.capture())
+
+            assertThat(userRoleCaptor.firstValue.id).isEqualTo(1L)
+            assertThat(userRoleCaptor.firstValue.role).isEqualTo(Role.USER)
+        }
+
+        @Test
+        fun shouldExpireSessionOnDelete() {
+            val dummySessions = dummySessions()
+            whenever(sessionRegistry.getAllSessions(any(), any<Boolean>())).thenReturn(
+                dummySessions
+            )
+
+            assertThat(dummySessions.filter { it.isExpired }).hasSize(0)
+
+            userRoleService.deleteUserRole(1)
+
+            verify(sessionRegistry, times(1)).getAllSessions(any<OidcUser>(), any<Boolean>())
+
+            assertThat(dummySessions.filter { it.isExpired }).hasSize(2)
+        }
+    }
+
+    @Nested
+    inner class WithoutExistingUserRole {
+
+        @BeforeEach
+        fun setup() {
+            doAnswer { _ ->
+                Optional.empty<UserRole>()
+            }.whenever(userRoleRepository).findById(any<Long>())
+        }
+
+        @Test
+        fun shouldNotUpdateUserRole() {
+            userRoleService.updateUserRole(1, Role.ADMIN)
+
+            verify(userRoleRepository, never()).save(any<UserRole>())
+        }
+
+        @Test
+        fun shouldNotExpireSessionOnUpdate() {
+            userRoleService.updateUserRole(1, Role.ADMIN)
+
+            verify(sessionRegistry, never()).getAllSessions(any<OidcUser>(), any<Boolean>())
+        }
+
+        @Test
+        fun shouldNotDeleteUserRole() {
+            userRoleService.deleteUserRole(1)
+
+            verify(userRoleRepository, never()).delete(any<UserRole>())
+        }
+
+        @Test
+        fun shouldNotExpireSessionOnDelete() {
+            userRoleService.deleteUserRole(1)
+
+            verify(sessionRegistry, never()).getAllSessions(any<OidcUser>(), any<Boolean>())
+        }
+
+    }
+
+
+    companion object {
+        private fun dummyPrincipal() = DefaultOidcUser(
+            listOf(),
+            OidcIdToken(
+                "anytokenvalue",
+                Instant.now(),
+                Instant.now().plusSeconds(10),
+                mapOf("sub" to "testsub", "preferred_username" to "patrick.tester")
+            )
+        )
+
+        private fun dummySessions() = listOf(
+            SessionInformation(
+                dummyPrincipal(),
+                "SESSIONID1",
+                Date.from(Instant.now()),
+            ),
+            SessionInformation(
+                dummyPrincipal(),
+                "SESSIONID2",
+                Date.from(Instant.now()),
+            )
+        )
+    }
+}

src/test/kotlin/dev/dnpm/etl/processor/services/ConsentProcessorTest.kt

@@ -0,0 +1,232 @@
+package dev.dnpm.etl.processor.services
+
+import ca.uhn.fhir.context.FhirContext
+import com.fasterxml.jackson.databind.ObjectMapper
+import dev.dnpm.etl.processor.config.AppConfigProperties
+import dev.dnpm.etl.processor.config.GIcsConfigProperties
+import dev.dnpm.etl.processor.config.JacksonConfig
+import dev.dnpm.etl.processor.consent.ConsentDomain
+import dev.dnpm.etl.processor.consent.GicsConsentService
+import dev.pcvolkmer.mv64e.mtb.Mtb
+import dev.pcvolkmer.mv64e.mtb.MvhSubmissionType
+import dev.pcvolkmer.mv64e.mtb.Patient
+import org.assertj.core.api.Assertions.assertThat
+import org.hl7.fhir.r4.model.Bundle
+import org.hl7.fhir.r4.model.CodeableConcept
+import org.hl7.fhir.r4.model.Coding
+import org.hl7.fhir.r4.model.Consent
+import org.junit.jupiter.api.BeforeEach
+import org.junit.jupiter.api.Test
+import org.junit.jupiter.api.extension.ExtendWith
+import org.junit.jupiter.params.ParameterizedTest
+import org.junit.jupiter.params.provider.CsvSource
+import org.junit.jupiter.params.provider.ValueSource
+import org.mockito.Mock
+import org.mockito.junit.jupiter.MockitoExtension
+import org.mockito.kotlin.any
+import org.mockito.kotlin.doAnswer
+import org.mockito.kotlin.eq
+import org.mockito.kotlin.whenever
+import org.springframework.core.io.ClassPathResource
+import java.io.IOException
+import java.io.InputStream
+import java.time.Instant
+import java.time.OffsetDateTime
+import java.util.*
+
+@ExtendWith(MockitoExtension::class)
+class ConsentProcessorTest {
+
+    private lateinit var appConfigProperties: AppConfigProperties
+    private lateinit var gicsConsentService: GicsConsentService
+    private lateinit var objectMapper: ObjectMapper
+    private lateinit var gIcsConfigProperties: GIcsConfigProperties
+    private lateinit var fhirContext: FhirContext
+    private lateinit var consentProcessor: ConsentProcessor
+
+    @BeforeEach
+    fun setups(
+        @Mock gicsConsentService: GicsConsentService,
+    ) {
+
+        this.gIcsConfigProperties = GIcsConfigProperties("https://gics.example.com")
+        val jacksonConfig = JacksonConfig()
+        this.objectMapper = jacksonConfig.objectMapper()
+        this.fhirContext = JacksonConfig.fhirContext()
+        this.gicsConsentService = gicsConsentService
+        this.appConfigProperties = AppConfigProperties(emptyList())
+        this.consentProcessor =
+            ConsentProcessor(
+                appConfigProperties,
+                gIcsConfigProperties,
+                objectMapper,
+                fhirContext,
+                gicsConsentService
+            )
+    }
+
+    @Test
+    fun consentOk() {
+        assertThat(consentProcessor.toString()).isNotNull
+        // prep gICS response
+        doAnswer { getDummyBroadConsentBundle() }.whenever(gicsConsentService)
+            .getConsent(any(), any(), eq(ConsentDomain.BROAD_CONSENT))
+
+        doAnswer { Bundle() }.whenever(gicsConsentService)
+            .getConsent(any(), any(), eq(ConsentDomain.MODELLVORHABEN_64E))
+
+        val inputMtb = Mtb.builder()
+            .patient(Patient.builder().id("d611d429-5003-11f0-a144-661e92ac9503").build()).build()
+        val checkResult = consentProcessor.consentGatedCheckAndTryEmbedding(inputMtb)
+
+        assertThat(checkResult).isTrue
+        assertThat(inputMtb.metadata.researchConsents).hasSize(26)
+    }
+
+    companion object {
+        fun getDummyGenomDeConsent(): Consent {
+            val consent = Consent()
+            consent.id = "consent 1 id"
+            consent.patient.reference = "Patient/1234-pat1"
+
+            consent.provision.setType(
+                Consent.ConsentProvisionType.fromCode(
+                    "deny"
+                )
+            )
+            consent.provision.period.start =
+                Date.from(Instant.parse("2025-08-15T00:00:00.00Z"))
+            consent.provision.period.end =
+                Date.from(Instant.parse("3000-01-01T00:00:00.00Z"))
+
+            val addProvision1 = consent.provision.addProvision()
+            addProvision1.setType(Consent.ConsentProvisionType.fromCode("permit"))
+            addProvision1.period.start = Date.from(Instant.parse("2025-08-15T00:00:00.00Z"))
+            addProvision1.period.end = Date.from(Instant.parse("3000-01-01T00:00:00.00Z"))
+            addProvision1.code.addLast(
+                CodeableConcept(
+                    Coding(
+                        "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/GenomDE_MV",
+                        "Teilnahme",
+                        "Teilnahme am Modellvorhaben und Einwilligung zur Genomsequenzierung"
+                    )
+                )
+            )
+
+            val addProvision2 = consent.provision.addProvision()
+            addProvision2.setType(Consent.ConsentProvisionType.fromCode("deny"))
+            addProvision2.period.start = Date.from(Instant.parse("2025-08-15T00:00:00.00Z"))
+            addProvision2.period.end = Date.from(Instant.parse("3000-01-01T00:00:00.00Z"))
+            addProvision2.code.addLast(
+                CodeableConcept(
+                    Coding(
+                        "https://ths-greifswald.de/fhir/CodeSystem/gics/Policy/GenomDE_MV",
+                        "Rekontaktierung",
+                        "Re-Identifizierung meiner Daten über die Vertrauensstelle beim Robert Koch-Institut und in die erneute Kontaktaufnahme durch meine behandelnde Ärztin oder meinen behandelnden Arzt"
+                    )
+                )
+            )
+            return consent
+        }
+    }
+
+    @ParameterizedTest
+    @CsvSource(
+        "2.16.840.1.113883.3.1937.777.24.5.3.8,urn:oid:2.16.840.1.113883.3.1937.777.24.5.3,2025-08-15T00:00:00+02:00,PERMIT,expect permit",
+        "2.16.840.1.113883.3.1937.777.24.5.3.8,urn:oid:2.16.840.1.113883.3.1937.777.24.5.3,2025-08-15T00:00:00+02:00,PERMIT,expect permit date is exactly on start",
+        "2.16.840.1.113883.3.1937.777.24.5.3.8,urn:oid:2.16.840.1.113883.3.1937.777.24.5.3,2055-08-15T00:00:00+02:00,PERMIT,expect permit date is exactly on end",
+        "2.16.840.1.113883.3.1937.777.24.5.3.8,urn:oid:2.16.840.1.113883.3.1937.777.24.5.3,2021-08-15T00:00:00+02:00,NULL,date is before start",
+        "2.16.840.1.113883.3.1937.777.24.5.3.8,urn:oid:2.16.840.1.113883.3.1937.777.24.5.3,2060-08-15T00:00:00+02:00,NULL,date is after end",
+        "2.16.840.1.113883.3.1937.777.24.5.3.27,urn:oid:2.16.840.1.113883.3.1937.777.24.5.3,2025-08-15T00:00:00+02:00,DENY,provision is denied",
+        "unknownCode,urn:oid:2.16.840.1.113883.3.1937.777.24.5.3,2025-08-15T00:00:00+02:00,NULL,code does not exist - therefore expect NULL",
+        "2.16.840.1.113883.3.1937.777.24.5.3.8,XXXX,2025-08-15T00:00:00+02:00,NULL,system not found - therefore expect NULL",
+    )
+    fun getProvisionTypeByPolicyCode(
+        code: String?, system: String?, timeStamp: String, expected: String?,
+        desc: String?
+    ) {
+        val testData = getDummyBroadConsentBundle()
+
+        val requestDate = Date.from(OffsetDateTime.parse(timeStamp).toInstant())
+
+        val result: Consent.ConsentProvisionType =
+            consentProcessor.getProvisionTypeByPolicyCode(testData, code, system, requestDate)
+        assertThat(result).isNotNull()
+
+
+        assertThat(result).`as`(desc)
+            .isEqualTo(Consent.ConsentProvisionType.valueOf(expected!!))
+    }
+
+    @Test
+    fun getProvisionTypeOnEmptyConsent(
+    ) {
+        val emptyResources = Bundle().addEntry(Bundle.BundleEntryComponent().setResource(Consent()))
+
+        val requestDate = Date.from(OffsetDateTime.parse("2025-08-15T00:00:00+02:00").toInstant())
+
+        val result: Consent.ConsentProvisionType =
+            consentProcessor.getProvisionTypeByPolicyCode(
+                emptyResources,
+                "anyCode",
+                "anySystem",
+                requestDate
+            )
+        assertThat(result).isNotNull()
+
+
+        assertThat(result).`as`("empty consent resource - expect NULL")
+            .isEqualTo(Consent.ConsentProvisionType.NULL)
+    }
+
+    fun getDummyBroadConsentBundle(): Bundle {
+        val bundle: InputStream?
+        try {
+            bundle = ClassPathResource(
+                "fake_broadConsent_gics_response_permit.json"
+            ).getInputStream()
+        } catch (e: IOException) {
+            throw RuntimeException(e)
+        }
+
+        return FhirContext.forR4().newJsonParser()
+            .parseResource<Bundle>(Bundle::class.java, bundle)
+    }
+
+    @ParameterizedTest
+    @ValueSource(booleans = [true, false])
+    fun mvSubmissionTypeIsSet(isTestSubmission: Boolean) {
+        appConfigProperties.genomDeTestSubmission = isTestSubmission
+        val fixture =
+            ConsentProcessor(
+                appConfigProperties,
+                gIcsConfigProperties,
+                objectMapper,
+                fhirContext,
+                gicsConsentService
+            )
+
+        doAnswer { getDummyBroadConsentBundle() }.whenever(gicsConsentService)
+            .getConsent(any(), any(), eq(ConsentDomain.BROAD_CONSENT))
+
+        doAnswer {
+            Bundle().addEntry(
+                Bundle.BundleEntryComponent().setResource(getDummyGenomDeConsent())
+            )
+        }.whenever(gicsConsentService)
+            .getConsent(any(), any(), eq(ConsentDomain.MODELLVORHABEN_64E))
+
+        val inputMtb = Mtb.builder()
+            .patient(Patient.builder().id("d611d429-5003-11f0-a144-661e92ac9503").build()).build()
+        val checkResult = fixture.consentGatedCheckAndTryEmbedding(inputMtb)
+        assertThat(checkResult).isNotNull
+
+        if (isTestSubmission)
+            assertThat(inputMtb.metadata.type).isEqualTo(MvhSubmissionType.TEST)
+        else {
+            assertThat(inputMtb.metadata.type).isEqualTo(MvhSubmissionType.INITIAL)
+        }
+
+    }
+
+}

src/test/kotlin/dev/dnpm/etl/processor/services/ReportServiceTest.kt

@@ -1,7 +1,7 @@
 /*
  * This file is part of ETL-Processor
  *
- * Copyright (c) 2023  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
+ * Copyright (c) 2025  Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
  *
  * This program is free software: you can redistribute it and/or modify
  * it under the terms of the GNU Affero General Public License as published
@@ -22,9 +22,14 @@ package dev.dnpm.etl.processor.services
 import com.fasterxml.jackson.databind.ObjectMapper
 import com.fasterxml.jackson.module.kotlin.KotlinModule
 import dev.dnpm.etl.processor.monitoring.ReportService
+import dev.dnpm.etl.processor.monitoring.RequestStatus
+import dev.dnpm.etl.processor.monitoring.asRequestStatus
 import org.assertj.core.api.Assertions.assertThat
 import org.junit.jupiter.api.BeforeEach
 import org.junit.jupiter.api.Test
+import org.junit.jupiter.params.ParameterizedTest
+import org.junit.jupiter.params.provider.Arguments
+import org.junit.jupiter.params.provider.MethodSource
 
 class ReportServiceTest {
 
@@ -60,6 +65,15 @@ class ReportServiceTest {
         assertThat(actual[2].message).isEqualTo("Warning Message")
         assertThat(actual[3].severity).isEqualTo(ReportService.Severity.INFO)
         assertThat(actual[3].message).isEqualTo("Info Message")
+
+        assertThat(actual.asRequestStatus()).isEqualTo(RequestStatus.ERROR)
+    }
+
+    @ParameterizedTest
+    @MethodSource("testData")
+    fun shouldParseDataQualityReport(json: String, requestStatus: RequestStatus) {
+        val actual = this.reportService.deserialize(json)
+        assertThat(actual.asRequestStatus()).isEqualTo(requestStatus)
     }
 
     @Test
@@ -73,4 +87,75 @@ class ReportServiceTest {
         assertThat(actual[0].message).isEqualTo("Not parsable data quality report '$invalidResponse'")
     }
 
+    companion object {
+
+        @JvmStatic
+        fun testData(): Set<Arguments> {
+            return setOf(
+                Arguments.of(
+                    """
+                        {
+                            "patient": "4711",
+                            "issues": [
+                                { "severity": "info", "message": "Info Message" },
+                                { "severity": "warning", "message": "Warning Message" },
+                                { "severity": "error", "message": "Error Message" },
+                                { "severity": "fatal", "message": "Fatal Message" }
+                            ]
+                        }
+                    """.trimIndent(),
+                    RequestStatus.ERROR
+                ),
+                Arguments.of(
+                    """
+                        {
+                            "patient": "4711",
+                            "issues": [
+                                { "severity": "info", "message": "Info Message" },
+                                { "severity": "warning", "message": "Warning Message" },
+                                { "severity": "error", "message": "Error Message" }
+                            ]
+                        }
+                    """.trimIndent(),
+                    RequestStatus.ERROR
+                ),
+                Arguments.of(
+                    """
+                        {
+                            "patient": "4711",
+                            "issues": [
+                                { "severity": "error", "message": "Error Message" }
+                                { "severity": "info", "message": "Info Message" }
+                            ]
+                        }
+                    """.trimIndent(),
+                    RequestStatus.ERROR
+                ),
+                Arguments.of(
+                    """
+                        {
+                            "patient": "4711",
+                            "issues": [
+                                { "severity": "info", "message": "Info Message" },
+                                { "severity": "warning", "message": "Warning Message" }
+                            ]
+                        }
+                    """.trimIndent(),
+                    RequestStatus.WARNING
+                ),
+                Arguments.of(
+                    """
+                        {
+                            "patient": "4711",
+                            "issues": [
+                                { "severity": "info", "message": "Info Message" }
+                            ]
+                        }
+                    """.trimIndent(),
+                    RequestStatus.SUCCESS
+                )
+            )
+        }
+    }
+
 }

src/test/kotlin/dev/dnpm/etl/processor/services/RequestProcessorTest.kt

@@ -20,23 +20,30 @@
 package dev.dnpm.etl.processor.services
 
 import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.*
+import dev.dnpm.etl.processor.Fingerprint
+import dev.dnpm.etl.processor.PatientId
+import dev.dnpm.etl.processor.PatientPseudonym
 import dev.dnpm.etl.processor.config.AppConfigProperties
+import dev.dnpm.etl.processor.consent.TtpConsentStatus
 import dev.dnpm.etl.processor.monitoring.Request
 import dev.dnpm.etl.processor.monitoring.RequestStatus
 import dev.dnpm.etl.processor.monitoring.RequestType
+import dev.dnpm.etl.processor.output.DeleteRequest
+import dev.dnpm.etl.processor.output.DnpmV2MtbFileRequest
 import dev.dnpm.etl.processor.output.MtbFileSender
 import dev.dnpm.etl.processor.output.RestMtbFileSender
 import dev.dnpm.etl.processor.pseudonym.PseudonymizeService
+import dev.dnpm.etl.processor.randomRequestId
+import dev.pcvolkmer.mv64e.mtb.*
 import org.assertj.core.api.Assertions.assertThat
 import org.junit.jupiter.api.BeforeEach
 import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.extension.ExtendWith
-import org.mockito.ArgumentMatchers.anyString
 import org.mockito.Mock
 import org.mockito.Mockito.*
 import org.mockito.junit.jupiter.MockitoExtension
 import org.mockito.kotlin.any
+import org.mockito.kotlin.anyValueClass
 import org.mockito.kotlin.argumentCaptor
 import org.mockito.kotlin.whenever
 import org.springframework.context.ApplicationEventPublisher
@@ -53,7 +60,7 @@ class RequestProcessorTest {
     private lateinit var requestService: RequestService
     private lateinit var applicationEventPublisher: ApplicationEventPublisher
     private lateinit var appConfigProperties: AppConfigProperties
-
+    private lateinit var consentProcessor: ConsentProcessor
     private lateinit var requestProcessor: RequestProcessor
 
     @BeforeEach
@@ -62,14 +69,16 @@ class RequestProcessorTest {
         @Mock transformationService: TransformationService,
         @Mock sender: RestMtbFileSender,
         @Mock requestService: RequestService,
-        @Mock applicationEventPublisher: ApplicationEventPublisher
+        @Mock applicationEventPublisher: ApplicationEventPublisher,
+        @Mock consentProcessor: ConsentProcessor
     ) {
         this.pseudonymizeService = pseudonymizeService
         this.transformationService = transformationService
         this.sender = sender
         this.requestService = requestService
         this.applicationEventPublisher = applicationEventPublisher
-        this.appConfigProperties = AppConfigProperties(null)
+        this.appConfigProperties = AppConfigProperties()
+        this.consentProcessor = consentProcessor
 
         val objectMapper = ObjectMapper()
 
@@ -80,7 +89,8 @@ class RequestProcessorTest {
             requestService,
             objectMapper,
             applicationEventPublisher,
-            appConfigProperties
+            appConfigProperties,
+            consentProcessor
         )
     }
 
@@ -88,50 +98,45 @@ class RequestProcessorTest {
     fun testShouldSendMtbFileDuplicationAndSaveUnknownRequestStatusAtFirst() {
         doAnswer {
             Request(
-                id = 1L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "zdlzv5s5ydmd4ktw2v5piohegc4jcyrm6j66bq6tv2uxuerndmga",
-                type = RequestType.MTB_FILE,
-                status = RequestStatus.SUCCESS,
-                processedAt = Instant.parse("2023-08-08T02:00:00Z")
+                1L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("6vkiti5bk6ikwifpajpt7cygmd3dvw54d6lwfhzlynb3pqtzferq"),
+                RequestType.MTB_FILE,
+                RequestStatus.SUCCESS,
+                Instant.parse("2023-08-08T02:00:00Z")
             )
-        }.`when`(requestService).lastMtbFileRequestForPatientPseudonym(anyString())
+        }.whenever(requestService).lastMtbFileRequestForPatientPseudonym(anyValueClass())
 
         doAnswer {
             false
-        }.`when`(requestService).isLastRequestWithKnownStatusDeletion(anyString())
+        }.whenever(requestService).isLastRequestWithKnownStatusDeletion(anyValueClass())
 
         doAnswer {
             it.arguments[0] as String
-        }.`when`(pseudonymizeService).patientPseudonym(any())
+        }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
         doAnswer {
             it.arguments[0]
-        }.whenever(transformationService).transform(any())
+        }.whenever(transformationService).transform(any<Mtb>())
 
-        val mtbFile = MtbFile.builder()
-            .withPatient(
+        whenever(consentProcessor.consentGatedCheckAndTryEmbedding(any())).thenReturn(true)
+
+        val mtbFile = Mtb.builder()
+            .patient(
                 Patient.builder()
-                    .withId("1")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
+                    .id("123")
                     .build()
             )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.ACTIVE)
-                    .withPatient("123")
+            .episodesOfCare(
+                listOf(
+                    MtbEpisodeOfCare.builder()
+                        .id("1")
+                        .patient(Reference.builder().id("123").build())
+                        .period(PeriodDate.builder().start(Date.from(Instant.parse("2023-08-08T02:00:00.00Z"))).build())
                         .build()
                 )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("1")
-                    .withPeriod(PeriodStart("2023-08-08"))
-                    .build()
             )
             .build()
 
@@ -147,50 +152,45 @@ class RequestProcessorTest {
     fun testShouldDetectMtbFileDuplicationAndSendDuplicationEvent() {
         doAnswer {
             Request(
-                id = 1L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "zdlzv5s5ydmd4ktw2v5piohegc4jcyrm6j66bq6tv2uxuerndmga",
-                type = RequestType.MTB_FILE,
-                status = RequestStatus.SUCCESS,
-                processedAt = Instant.parse("2023-08-08T02:00:00Z")
+                1L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("4gcjwtjjtcczybsljxepdfpkaeusvd7g3vogfqpmphyffyzfx7dq"),
+                RequestType.MTB_FILE,
+                RequestStatus.SUCCESS,
+                Instant.parse("2023-08-08T02:00:00Z")
             )
-        }.`when`(requestService).lastMtbFileRequestForPatientPseudonym(anyString())
+        }.whenever(requestService).lastMtbFileRequestForPatientPseudonym(anyValueClass())
 
         doAnswer {
             false
-        }.`when`(requestService).isLastRequestWithKnownStatusDeletion(anyString())
+        }.whenever(requestService).isLastRequestWithKnownStatusDeletion(anyValueClass())
 
         doAnswer {
             it.arguments[0] as String
-        }.`when`(pseudonymizeService).patientPseudonym(any())
+        }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
         doAnswer {
             it.arguments[0]
-        }.whenever(transformationService).transform(any())
+        }.whenever(transformationService).transform(any<Mtb>())
 
-        val mtbFile = MtbFile.builder()
-            .withPatient(
+        whenever(consentProcessor.consentGatedCheckAndTryEmbedding(any())).thenReturn(true)
+
+        val mtbFile = Mtb.builder()
+            .patient(
                 Patient.builder()
-                    .withId("1")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
+                    .id("123")
                     .build()
             )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.ACTIVE)
-                    .withPatient("123")
+            .episodesOfCare(
+                listOf(
+                    MtbEpisodeOfCare.builder()
+                        .id("1")
+                        .patient(Reference.builder().id("123").build())
+                        .period(PeriodDate.builder().start(Date.from(Instant.parse("2021-01-01T00:00:00.00Z"))).build())
                         .build()
                 )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("1")
-                    .withPeriod(PeriodStart("2023-08-08"))
-                    .build()
             )
             .build()
 
@@ -206,54 +206,49 @@ class RequestProcessorTest {
     fun testShouldSendMtbFileAndSendSuccessEvent() {
         doAnswer {
             Request(
-                id = 1L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "different",
-                type = RequestType.MTB_FILE,
-                status = RequestStatus.SUCCESS,
-                processedAt = Instant.parse("2023-08-08T02:00:00Z")
+                1L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("different"),
+                RequestType.MTB_FILE,
+                RequestStatus.SUCCESS,
+                Instant.parse("2023-08-08T02:00:00Z")
             )
-        }.`when`(requestService).lastMtbFileRequestForPatientPseudonym(anyString())
+        }.whenever(requestService).lastMtbFileRequestForPatientPseudonym(anyValueClass())
 
         doAnswer {
             false
-        }.`when`(requestService).isLastRequestWithKnownStatusDeletion(anyString())
+        }.whenever(requestService).isLastRequestWithKnownStatusDeletion(anyValueClass())
 
         doAnswer {
             MtbFileSender.Response(status = RequestStatus.SUCCESS)
-        }.`when`(sender).send(any<MtbFileSender.MtbFileRequest>())
+        }.whenever(sender).send(any<DnpmV2MtbFileRequest>())
 
         doAnswer {
             it.arguments[0] as String
-        }.`when`(pseudonymizeService).patientPseudonym(any())
+        }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
         doAnswer {
             it.arguments[0]
-        }.whenever(transformationService).transform(any())
+        }.whenever(transformationService).transform(any<Mtb>())
 
-        val mtbFile = MtbFile.builder()
-            .withPatient(
+        whenever(consentProcessor.consentGatedCheckAndTryEmbedding(any())).thenReturn(true)
+
+        val mtbFile = Mtb.builder()
+            .patient(
                 Patient.builder()
-                    .withId("1")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
+                    .id("123")
                     .build()
             )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.ACTIVE)
-                    .withPatient("123")
+            .episodesOfCare(
+                listOf(
+                    MtbEpisodeOfCare.builder()
+                        .id("1")
+                        .patient(Reference.builder().id("123").build())
+                        .period(PeriodDate.builder().start(Date.from(Instant.parse("2021-01-01T00:00:00.00Z"))).build())
                         .build()
                 )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("1")
-                    .withPeriod(PeriodStart("2023-08-08"))
-                    .build()
             )
             .build()
 
@@ -269,55 +264,62 @@ class RequestProcessorTest {
     fun testShouldSendMtbFileAndSendErrorEvent() {
         doAnswer {
             Request(
-                id = 1L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "different",
-                type = RequestType.MTB_FILE,
-                status = RequestStatus.SUCCESS,
-                processedAt = Instant.parse("2023-08-08T02:00:00Z")
+                1L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("different"),
+                RequestType.MTB_FILE,
+                RequestStatus.SUCCESS,
+                Instant.parse("2023-08-08T02:00:00Z")
             )
-        }.`when`(requestService).lastMtbFileRequestForPatientPseudonym(anyString())
+        }.whenever(requestService).lastMtbFileRequestForPatientPseudonym(anyValueClass())
 
         doAnswer {
             false
-        }.`when`(requestService).isLastRequestWithKnownStatusDeletion(anyString())
+        }.whenever(requestService).isLastRequestWithKnownStatusDeletion(anyValueClass())
 
         doAnswer {
             MtbFileSender.Response(status = RequestStatus.ERROR)
-        }.`when`(sender).send(any<MtbFileSender.MtbFileRequest>())
+        }.whenever(sender).send(any<DnpmV2MtbFileRequest>())
 
         doAnswer {
             it.arguments[0] as String
-        }.`when`(pseudonymizeService).patientPseudonym(any())
+        }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
         doAnswer {
             it.arguments[0]
-        }.whenever(transformationService).transform(any())
+        }.whenever(transformationService).transform(any<Mtb>())
 
-        val mtbFile = MtbFile.builder()
-            .withPatient(
+        whenever(consentProcessor.consentGatedCheckAndTryEmbedding(any())).thenReturn(true)
+
+        val mtbFile = Mtb.builder()
+            .patient(
                 Patient.builder()
-                    .withId("1")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
+                    .id("123")
                     .build()
             )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.ACTIVE)
-                    .withPatient("123")
+            .metadata(
+                MvhMetadata
+                    .builder()
+                    .modelProjectConsent(
+                        ModelProjectConsent
+                            .builder()
+                            .provisions(
+                                listOf(Provision.builder().type(ConsentProvision.PERMIT).purpose(ModelProjectConsentPurpose.SEQUENCING).build())
+                            ).build()
+                    )
                     .build()
             )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("1")
-                    .withPeriod(PeriodStart("2023-08-08"))
+            .episodesOfCare(
+                listOf(
+                    MtbEpisodeOfCare.builder()
+                        .id("1")
+                        .patient(Reference.builder().id("123").build())
+                        .period(PeriodDate.builder().start(Date.from(Instant.parse("2021-01-01T00:00:00.00Z"))).build())
                         .build()
                 )
+            )
             .build()
 
         this.requestProcessor.processMtbFile(mtbFile)
@@ -332,13 +334,16 @@ class RequestProcessorTest {
     fun testShouldSendDeleteRequestAndSaveUnknownRequestStatusAtFirst() {
         doAnswer {
             "PSEUDONYM"
-        }.`when`(pseudonymizeService).patientPseudonym(anyString())
+        }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
         doAnswer {
             MtbFileSender.Response(status = RequestStatus.UNKNOWN)
-        }.`when`(sender).send(any<MtbFileSender.DeleteRequest>())
+        }.whenever(sender).send(any<DeleteRequest>())
 
-        this.requestProcessor.processDeletion("TEST_12345678901")
+        this.requestProcessor.processDeletion(
+            TEST_PATIENT_ID,
+            isConsented = TtpConsentStatus.UNKNOWN_CHECK_FILE
+        )
 
         val requestCaptor = argumentCaptor<Request>()
         verify(requestService, times(1)).save(requestCaptor.capture())
@@ -350,13 +355,16 @@ class RequestProcessorTest {
     fun testShouldSendDeleteRequestAndSendSuccessEvent() {
         doAnswer {
             "PSEUDONYM"
-        }.`when`(pseudonymizeService).patientPseudonym(anyString())
+        }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
         doAnswer {
             MtbFileSender.Response(status = RequestStatus.SUCCESS)
-        }.`when`(sender).send(any<MtbFileSender.DeleteRequest>())
+        }.whenever(sender).send(any<DeleteRequest>())
 
-        this.requestProcessor.processDeletion("TEST_12345678901")
+        this.requestProcessor.processDeletion(
+            TEST_PATIENT_ID,
+            isConsented = TtpConsentStatus.UNKNOWN_CHECK_FILE
+        )
 
         val eventCaptor = argumentCaptor<ResponseEvent>()
         verify(applicationEventPublisher, times(1)).publishEvent(eventCaptor.capture())
@@ -368,13 +376,16 @@ class RequestProcessorTest {
     fun testShouldSendDeleteRequestAndSendErrorEvent() {
         doAnswer {
             "PSEUDONYM"
-        }.`when`(pseudonymizeService).patientPseudonym(anyString())
+        }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
         doAnswer {
             MtbFileSender.Response(status = RequestStatus.ERROR)
-        }.`when`(sender).send(any<MtbFileSender.DeleteRequest>())
+        }.whenever(sender).send(any<DeleteRequest>())
 
-        this.requestProcessor.processDeletion("TEST_12345678901")
+        this.requestProcessor.processDeletion(
+            TEST_PATIENT_ID,
+            isConsented = TtpConsentStatus.UNKNOWN_CHECK_FILE
+        )
 
         val eventCaptor = argumentCaptor<ResponseEvent>()
         verify(applicationEventPublisher, times(1)).publishEvent(eventCaptor.capture())
@@ -384,9 +395,12 @@ class RequestProcessorTest {
 
     @Test
     fun testShouldSendDeleteRequestWithPseudonymErrorAndSaveErrorRequestStatus() {
-        doThrow(RuntimeException()).`when`(pseudonymizeService).patientPseudonym(anyString())
+        doThrow(RuntimeException()).whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
-        this.requestProcessor.processDeletion("TEST_12345678901")
+        this.requestProcessor.processDeletion(
+            TEST_PATIENT_ID,
+            isConsented = TtpConsentStatus.UNKNOWN_CHECK_FILE
+        )
 
         val requestCaptor = argumentCaptor<Request>()
         verify(requestService, times(1)).save(requestCaptor.capture())
@@ -400,37 +414,32 @@ class RequestProcessorTest {
 
         doAnswer {
             it.arguments[0] as String
-        }.`when`(pseudonymizeService).patientPseudonym(any())
+        }.whenever(pseudonymizeService).patientPseudonym(anyValueClass())
 
         doAnswer {
             it.arguments[0]
-        }.whenever(transformationService).transform(any())
+        }.whenever(transformationService).transform(any<Mtb>())
 
         doAnswer {
             MtbFileSender.Response(status = RequestStatus.SUCCESS)
-        }.`when`(sender).send(any<MtbFileSender.MtbFileRequest>())
+        }.whenever(sender).send(any<DnpmV2MtbFileRequest>())
 
-        val mtbFile = MtbFile.builder()
-            .withPatient(
+        whenever(consentProcessor.consentGatedCheckAndTryEmbedding(any())).thenReturn(true)
+
+        val mtbFile = Mtb.builder()
+            .patient(
                 Patient.builder()
-                    .withId("1")
-                    .withBirthDate("2000-08-08")
-                    .withGender(Patient.Gender.MALE)
+                    .id("123")
                     .build()
             )
-            .withConsent(
-                Consent.builder()
-                    .withId("1")
-                    .withStatus(Consent.Status.ACTIVE)
-                    .withPatient("123")
+            .episodesOfCare(
+                listOf(
+                    MtbEpisodeOfCare.builder()
+                        .id("1")
+                        .patient(Reference.builder().id("123").build())
+                        .period(PeriodDate.builder().start(Date.from(Instant.parse("2021-01-01T00:00:00.00Z"))).build())
                         .build()
                 )
-            .withEpisode(
-                Episode.builder()
-                    .withId("1")
-                    .withPatient("1")
-                    .withPeriod(PeriodStart("2023-08-08"))
-                    .build()
             )
             .build()
 
@@ -442,4 +451,8 @@ class RequestProcessorTest {
         assertThat(eventCaptor.firstValue.status).isEqualTo(RequestStatus.SUCCESS)
     }
 
+    companion object {
+        val TEST_PATIENT_ID = PatientId("TEST_12345678901")
+    }
+
 }

src/test/kotlin/dev/dnpm/etl/processor/services/RequestServiceTest.kt

@@ -19,6 +19,7 @@
 
 package dev.dnpm.etl.processor.services
 
+import dev.dnpm.etl.processor.*
 import dev.dnpm.etl.processor.monitoring.Request
 import dev.dnpm.etl.processor.monitoring.RequestRepository
 import dev.dnpm.etl.processor.monitoring.RequestStatus
@@ -30,8 +31,9 @@ import org.junit.jupiter.api.extension.ExtendWith
 import org.mockito.Mock
 import org.mockito.Mockito.*
 import org.mockito.junit.jupiter.MockitoExtension
+import org.mockito.kotlin.anyValueClass
+import org.mockito.kotlin.whenever
 import java.time.Instant
-import java.util.*
 
 @ExtendWith(MockitoExtension::class)
 class RequestServiceTest {
@@ -41,14 +43,14 @@ class RequestServiceTest {
     private lateinit var requestService: RequestService
 
     private fun anyRequest() = any(Request::class.java) ?: Request(
-        id = 0L,
-        uuid = UUID.randomUUID().toString(),
-        patientId = "TEST_dummy",
-        pid = "PX",
-        fingerprint = "dummy",
-        type = RequestType.MTB_FILE,
-        status = RequestStatus.SUCCESS,
-        processedAt = Instant.parse("2023-08-08T02:00:00Z")
+        0L,
+        randomRequestId(),
+        PatientPseudonym("TEST_dummy"),
+        PatientId("PX"),
+        Fingerprint("dummy"),
+        RequestType.MTB_FILE,
+        RequestStatus.SUCCESS,
+        Instant.parse("2023-08-08T02:00:00Z")
     )
 
     @BeforeEach
@@ -63,34 +65,34 @@ class RequestServiceTest {
     fun shouldIndicateLastRequestIsDeleteRequest() {
         val requests = listOf(
             Request(
-                id = 1L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "0123456789abcdef1",
-                type = RequestType.MTB_FILE,
-                status = RequestStatus.WARNING,
-                processedAt = Instant.parse("2023-07-07T00:00:00Z")
+                1L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("0123456789abcdef1"),
+                RequestType.MTB_FILE,
+                RequestStatus.WARNING,
+                Instant.parse("2023-07-07T00:00:00Z")
             ),
             Request(
-                id = 2L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "0123456789abcdefd",
-                type = RequestType.DELETE,
-                status = RequestStatus.WARNING,
-                processedAt = Instant.parse("2023-07-07T02:00:00Z")
+                2L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("0123456789abcdefd"),
+                RequestType.DELETE,
+                RequestStatus.WARNING,
+                Instant.parse("2023-07-07T02:00:00Z")
             ),
             Request(
-                id = 3L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "0123456789abcdef1",
-                type = RequestType.MTB_FILE,
-                status = RequestStatus.UNKNOWN,
-                processedAt = Instant.parse("2023-08-11T00:00:00Z")
+                3L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("0123456789abcdef1"),
+                RequestType.MTB_FILE,
+                RequestStatus.UNKNOWN,
+                Instant.parse("2023-08-11T00:00:00Z")
             )
         )
 
@@ -103,34 +105,34 @@ class RequestServiceTest {
     fun shouldIndicateLastRequestIsNotDeleteRequest() {
         val requests = listOf(
             Request(
-                id = 1L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "0123456789abcdef1",
-                type = RequestType.MTB_FILE,
-                status = RequestStatus.WARNING,
-                processedAt = Instant.parse("2023-07-07T00:00:00Z")
+                1L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("0123456789abcdef1"),
+                RequestType.MTB_FILE,
+                RequestStatus.WARNING,
+                Instant.parse("2023-07-07T00:00:00Z")
             ),
             Request(
-                id = 2L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "0123456789abcdef1",
-                type = RequestType.MTB_FILE,
-                status = RequestStatus.WARNING,
-                processedAt = Instant.parse("2023-07-07T02:00:00Z")
+                2L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("0123456789abcdef1"),
+                RequestType.MTB_FILE,
+                RequestStatus.WARNING,
+                Instant.parse("2023-07-07T02:00:00Z")
             ),
             Request(
-                id = 3L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "0123456789abcdef1",
-                type = RequestType.MTB_FILE,
-                status = RequestStatus.UNKNOWN,
-                processedAt = Instant.parse("2023-08-11T00:00:00Z")
+                3L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("0123456789abcdef1"),
+                RequestType.MTB_FILE,
+                RequestStatus.UNKNOWN,
+                Instant.parse("2023-08-11T00:00:00Z")
             )
         )
 
@@ -143,31 +145,31 @@ class RequestServiceTest {
     fun shouldReturnPatientsLastRequest() {
         val requests = listOf(
             Request(
-                id = 1L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678901",
-                pid = "P1",
-                fingerprint = "0123456789abcdef1",
-                type = RequestType.DELETE,
-                status = RequestStatus.SUCCESS,
-                processedAt = Instant.parse("2023-07-07T02:00:00Z")
+                1L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678901"),
+                PatientId("P1"),
+                Fingerprint("0123456789abcdef1"),
+                RequestType.DELETE,
+                RequestStatus.SUCCESS,
+                Instant.parse("2023-07-07T02:00:00Z")
             ),
             Request(
-                id = 1L,
-                uuid = UUID.randomUUID().toString(),
-                patientId = "TEST_12345678902",
-                pid = "P2",
-                fingerprint = "0123456789abcdef2",
-                type = RequestType.MTB_FILE,
-                status = RequestStatus.WARNING,
-                processedAt = Instant.parse("2023-08-08T00:00:00Z")
+                1L,
+                randomRequestId(),
+                PatientPseudonym("TEST_12345678902"),
+                PatientId("P2"),
+                Fingerprint("0123456789abcdef2"),
+                RequestType.MTB_FILE,
+                RequestStatus.WARNING,
+                Instant.parse("2023-08-08T00:00:00Z")
             )
         )
 
         val actual = RequestService.lastMtbFileRequestForPatientPseudonym(requests)
 
         assertThat(actual).isInstanceOf(Request::class.java)
-        assertThat(actual?.fingerprint).isEqualTo("0123456789abcdef2")
+        assertThat(actual?.fingerprint).isEqualTo(Fingerprint("0123456789abcdef2"))
     }
 
     @Test
@@ -184,16 +186,16 @@ class RequestServiceTest {
         doAnswer {
             val obj = it.arguments[0] as Request
             obj.copy(id = 1L)
-        }.`when`(requestRepository).save(anyRequest())
+        }.whenever(requestRepository).save(anyRequest())
 
         val request = Request(
-            uuid = UUID.randomUUID().toString(),
-            patientId = "TEST_12345678901",
-            pid = "P1",
-            fingerprint = "0123456789abcdef1",
-            type = RequestType.DELETE,
-            status = RequestStatus.SUCCESS,
-            processedAt = Instant.parse("2023-07-07T02:00:00Z")
+            randomRequestId(),
+            PatientPseudonym("TEST_12345678901"),
+            PatientId("P1"),
+            Fingerprint("0123456789abcdef1"),
+            RequestType.DELETE,
+            RequestStatus.SUCCESS,
+            Instant.parse("2023-07-07T02:00:00Z")
         )
 
         requestService.save(request)
@@ -203,23 +205,23 @@ class RequestServiceTest {
 
     @Test
     fun allRequestsByPatientPseudonymShouldRequestAllRequestsForPatientPseudonym() {
-        requestService.allRequestsByPatientPseudonym("TEST_12345678901")
+        requestService.allRequestsByPatientPseudonym(PatientPseudonym("TEST_12345678901"))
 
-        verify(requestRepository, times(1)).findAllByPatientIdOrderByProcessedAtDesc(anyString())
+        verify(requestRepository, times(1)).findAllByPatientPseudonymOrderByProcessedAtDesc(anyValueClass())
     }
 
     @Test
     fun lastMtbFileRequestForPatientPseudonymShouldRequestAllRequestsForPatientPseudonym() {
-        requestService.lastMtbFileRequestForPatientPseudonym("TEST_12345678901")
+        requestService.lastMtbFileRequestForPatientPseudonym(PatientPseudonym("TEST_12345678901"))
 
-        verify(requestRepository, times(1)).findAllByPatientIdOrderByProcessedAtDesc(anyString())
+        verify(requestRepository, times(1)).findAllByPatientPseudonymOrderByProcessedAtDesc(anyValueClass())
     }
 
     @Test
     fun isLastRequestDeletionShouldRequestAllRequestsForPatientPseudonym() {
-        requestService.isLastRequestWithKnownStatusDeletion("TEST_12345678901")
+        requestService.isLastRequestWithKnownStatusDeletion(PatientPseudonym("TEST_12345678901"))
 
-        verify(requestRepository, times(1)).findAllByPatientIdOrderByProcessedAtDesc(anyString())
+        verify(requestRepository, times(1)).findAllByPatientPseudonymOrderByProcessedAtDesc(anyValueClass())
     }
 
 }

src/test/kotlin/dev/dnpm/etl/processor/services/ResponseProcessorTest.kt

@@ -19,8 +19,8 @@
 
 package dev.dnpm.etl.processor.services
 
+import dev.dnpm.etl.processor.*
 import dev.dnpm.etl.processor.monitoring.Request
-import dev.dnpm.etl.processor.monitoring.RequestRepository
 import dev.dnpm.etl.processor.monitoring.RequestStatus
 import dev.dnpm.etl.processor.monitoring.RequestType
 import org.assertj.core.api.Assertions.assertThat
@@ -29,7 +29,6 @@ import org.junit.jupiter.api.Test
 import org.junit.jupiter.api.extension.ExtendWith
 import org.junit.jupiter.params.ParameterizedTest
 import org.junit.jupiter.params.provider.MethodSource
-import org.mockito.ArgumentMatchers.anyString
 import org.mockito.Mock
 import org.mockito.junit.jupiter.MockitoExtension
 import org.mockito.kotlin.*
@@ -40,64 +39,64 @@ import java.util.*
 @ExtendWith(MockitoExtension::class)
 class ResponseProcessorTest {
 
-    private lateinit var requestRepository: RequestRepository
+    private lateinit var requestService: RequestService
     private lateinit var statisticsUpdateProducer: Sinks.Many<Any>
 
     private lateinit var responseProcessor: ResponseProcessor
 
     private val testRequest = Request(
         1L,
-        "TestID1234",
-        "PSEUDONYM-A",
-        "1",
-        "dummyfingerprint",
+        RequestId("TestID1234"),
+        PatientPseudonym("PSEUDONYM-A"),
+        PatientId("1"),
+        Fingerprint("dummyfingerprint"),
         RequestType.MTB_FILE,
         RequestStatus.UNKNOWN
     )
 
     @BeforeEach
     fun setup(
-        @Mock requestRepository: RequestRepository,
+        @Mock requestService: RequestService,
         @Mock statisticsUpdateProducer: Sinks.Many<Any>
     ) {
-        this.requestRepository = requestRepository
+        this.requestService = requestService
         this.statisticsUpdateProducer = statisticsUpdateProducer
 
-        this.responseProcessor = ResponseProcessor(requestRepository, statisticsUpdateProducer)
+        this.responseProcessor = ResponseProcessor(requestService, statisticsUpdateProducer)
     }
 
     @Test
     fun shouldNotSaveStatusForUnknownRequest() {
         doAnswer {
             Optional.empty<Request>()
-        }.whenever(requestRepository).findByUuidEquals(anyString())
+        }.whenever(requestService).findByUuid(anyValueClass())
 
         val event = ResponseEvent(
-            "TestID1234",
+            RequestId("TestID1234"),
             Instant.parse("2023-09-09T00:00:00Z"),
             RequestStatus.SUCCESS
         )
 
         this.responseProcessor.handleResponseEvent(event)
 
-        verify(requestRepository, never()).save(any())
+        verify(requestService, never()).save(any())
     }
 
     @Test
     fun shouldNotSaveStatusWithUnknownState() {
         doAnswer {
             Optional.of(testRequest)
-        }.whenever(requestRepository).findByUuidEquals(anyString())
+        }.whenever(requestService).findByUuid(anyValueClass())
 
         val event = ResponseEvent(
-            "TestID1234",
+            RequestId("TestID1234"),
             Instant.parse("2023-09-09T00:00:00Z"),
             RequestStatus.UNKNOWN
         )
 
         this.responseProcessor.handleResponseEvent(event)
 
-        verify(requestRepository, never()).save(any())
+        verify(requestService, never()).save(any<Request>())
     }
 
     @ParameterizedTest
@@ -105,10 +104,10 @@ class ResponseProcessorTest {
     fun shouldSaveStatusForKnownRequest(requestStatus: RequestStatus) {
         doAnswer {
             Optional.of(testRequest)
-        }.whenever(requestRepository).findByUuidEquals(anyString())
+        }.whenever(requestService).findByUuid(anyValueClass())
 
         val event = ResponseEvent(
-            "TestID1234",
+            RequestId("TestID1234"),
             Instant.parse("2023-09-09T00:00:00Z"),
             requestStatus
         )
@@ -116,7 +115,7 @@ class ResponseProcessorTest {
         this.responseProcessor.handleResponseEvent(event)
 
         val captor = argumentCaptor<Request>()
-        verify(requestRepository, times(1)).save(captor.capture())
+        verify(requestService, times(1)).save(captor.capture())
         assertThat(captor.firstValue).isNotNull
         assertThat(captor.firstValue.status).isEqualTo(requestStatus)
     }

src/test/kotlin/dev/dnpm/etl/processor/services/TransformationServiceTest.kt

@@ -19,14 +19,14 @@
 
 package dev.dnpm.etl.processor.services
 
-import com.fasterxml.jackson.databind.ObjectMapper
-import de.ukw.ccc.bwhc.dto.Consent
-import de.ukw.ccc.bwhc.dto.Diagnosis
-import de.ukw.ccc.bwhc.dto.Icd10
-import de.ukw.ccc.bwhc.dto.MtbFile
+import dev.dnpm.etl.processor.config.JacksonConfig
+import dev.pcvolkmer.mv64e.mtb.*
 import org.assertj.core.api.Assertions.assertThat
 import org.junit.jupiter.api.BeforeEach
 import org.junit.jupiter.api.Test
+import org.hl7.fhir.instance.model.api.IBaseResource
+import java.time.Instant
+import java.util.Date
 
 class TransformationServiceTest {
 
@@ -35,61 +35,92 @@ class TransformationServiceTest {
     @BeforeEach
     fun setup() {
         this.service = TransformationService(
-            ObjectMapper(), listOf(
-                Transformation.of("consent.status") from Consent.Status.ACTIVE to Consent.Status.REJECTED,
-                Transformation.of("diagnoses[*].icd10.version") from "2013" to "2014",
+            JacksonConfig().objectMapper(), listOf(
+                Transformation.of("diagnoses[*].code.version") from "2013" to "2014",
             )
         )
     }
 
     @Test
     fun shouldTransformMtbFile() {
-        val mtbFile = MtbFile.builder().withDiagnoses(
+        val mtbFile = Mtb.builder().diagnoses(
             listOf(
-                Diagnosis.builder().withId("1234").withIcd10(Icd10("F79.9").also {
-                    it.version = "2013"
-                }).build()
+                MtbDiagnosis.builder().id("1234").code(Coding.builder().code("F79.9").version("2013").build()).build()
             )
         ).build()
 
         val actual = this.service.transform(mtbFile)
 
         assertThat(actual).isNotNull
-        assertThat(actual.diagnoses[0].icd10.version).isEqualTo("2014")
+        assertThat(actual.diagnoses[0].code.version).isEqualTo("2014")
     }
 
     @Test
     fun shouldOnlyTransformGivenValues() {
-        val mtbFile = MtbFile.builder().withDiagnoses(
+        val mtbFile = Mtb.builder().diagnoses(
             listOf(
-                Diagnosis.builder().withId("1234").withIcd10(Icd10("F79.9").also {
-                    it.version = "2013"
-                }).build(),
-                Diagnosis.builder().withId("5678").withIcd10(Icd10("F79.8").also {
-                    it.version = "2019"
-                }).build()
+                MtbDiagnosis.builder().id("1234").code(Coding.builder().code("F79.9").version("2013").build()).build(),
+                MtbDiagnosis.builder().id("1234").code(Coding.builder().code("F79.8").version("2019").build()).build()
             )
         ).build()
 
         val actual = this.service.transform(mtbFile)
 
         assertThat(actual).isNotNull
-        assertThat(actual.diagnoses[0].icd10.code).isEqualTo("F79.9")
-        assertThat(actual.diagnoses[0].icd10.version).isEqualTo("2014")
-        assertThat(actual.diagnoses[1].icd10.code).isEqualTo("F79.8")
-        assertThat(actual.diagnoses[1].icd10.version).isEqualTo("2019")
+        assertThat(actual.diagnoses[0].code.code).isEqualTo("F79.9")
+        assertThat(actual.diagnoses[0].code.version).isEqualTo("2014")
+        assertThat(actual.diagnoses[1].code.code).isEqualTo("F79.8")
+        assertThat(actual.diagnoses[1].code.version).isEqualTo("2019")
     }
 
     @Test
-    fun shouldTransformMtbFileWithConsentEnum() {
-        val mtbFile = MtbFile.builder().withConsent(
-            Consent("123", "456", Consent.Status.ACTIVE)
+    fun shouldTransformConsentValues() {
+        val mtbFile = Mtb.builder().diagnoses(
+            listOf(
+                MtbDiagnosis.builder().id("1234").code(Coding.builder().code("F79.9").version("2013").build()).build(),
+                MtbDiagnosis.builder().id("1234").code(Coding.builder().code("F79.8").version("2019").build()).build()
+            )
         ).build()
 
         val actual = this.service.transform(mtbFile)
 
-        assertThat(actual.consent).isNotNull
-        assertThat(actual.consent.status).isEqualTo(Consent.Status.REJECTED)
+        assertThat(actual).isNotNull
+        assertThat(actual.diagnoses[0].code.code).isEqualTo("F79.9")
+        assertThat(actual.diagnoses[0].code.version).isEqualTo("2014")
+        assertThat(actual.diagnoses[1].code.code).isEqualTo("F79.8")
+        assertThat(actual.diagnoses[1].code.version).isEqualTo("2019")
+    }
+
+    @Test
+    fun shouldTransformConsent() {
+        val mvhMetadata = MvhMetadata.builder().transferTan("transfertan12345").build()
+
+        assertThat(mvhMetadata).isNotNull
+        mvhMetadata.modelProjectConsent =
+            ModelProjectConsent.builder().date(Date.from(Instant.parse("2025-08-15T00:00:00.00Z")))
+                .version("1").provisions(
+                    listOf(
+                        Provision.builder().type(ConsentProvision.PERMIT)
+                            .purpose(ModelProjectConsentPurpose.SEQUENCING)
+                            .date(Date.from(Instant.parse("2025-08-15T00:00:00.00Z"))).build(),
+                        Provision.builder().type(ConsentProvision.PERMIT)
+                            .purpose(ModelProjectConsentPurpose.REIDENTIFICATION)
+                            .date(Date.from(Instant.parse("2025-08-15T00:00:00.00Z"))).build(),
+                        Provision.builder().type(ConsentProvision.DENY)
+                            .purpose(ModelProjectConsentPurpose.CASE_IDENTIFICATION)
+                            .date(Date.from(Instant.parse("2025-08-15T00:00:00.00Z"))).build()
+                    )
+                ).build()
+        val consent = ConsentProcessorTest.getDummyGenomDeConsent()
+
+        mvhMetadata.researchConsents = mutableListOf()
+        mvhMetadata.researchConsents.add(mapOf(consent.id to consent as IBaseResource))
+
+        val mtbFile = Mtb.builder().metadata(mvhMetadata).build()
+
+        val transformed = service.transform(mtbFile)
+        assertThat(transformed.metadata.modelProjectConsent.date).isNotNull
+
     }
 
 }