mirror of
https://github.com/dnpm-dip/mv64e-mtb-dto-dotnet.git
synced 2025-07-01 18:32:54 +00:00
5252 lines
224 KiB
C#
5252 lines
224 KiB
C#
#pragma warning disable CS8765
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#pragma warning disable CS8618
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namespace MV64e.MTB
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{
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using System;
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using System.Collections.Generic;
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using System.Globalization;
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using Newtonsoft.Json;
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using Newtonsoft.Json.Converters;
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public partial class Mtb
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{
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[JsonProperty("carePlans", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<MtbCarePlan> CarePlans { get; set; }
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[JsonProperty("claimResponses", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<ClaimResponse> ClaimResponses { get; set; }
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[JsonProperty("claims", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<Claim> Claims { get; set; }
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[JsonProperty("diagnoses", Required = Required.Always)]
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public List<MtbDiagnosis> Diagnoses { get; set; }
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[JsonProperty("episodesOfCare", Required = Required.Always)]
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public List<MtbEpisodeOfCare> EpisodesOfCare { get; set; }
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[JsonProperty("familyMemberHistories", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<FamilyMemberHistory> FamilyMemberHistories { get; set; }
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[JsonProperty("followUps", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<FollowUp> FollowUps { get; set; }
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[JsonProperty("guidelineProcedures", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<OncoProcedure> GuidelineProcedures { get; set; }
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[JsonProperty("guidelineTherapies", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<MtbSystemicTherapy> GuidelineTherapies { get; set; }
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[JsonProperty("histologyReports", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<HistologyReport> HistologyReports { get; set; }
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[JsonProperty("ihcReports", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<IhcReport> IhcReports { get; set; }
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[JsonProperty("metadata", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public MvhMetadata Metadata { get; set; }
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[JsonProperty("ngsReports", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<SomaticNgsReport> NgsReports { get; set; }
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[JsonProperty("patient", Required = Required.Always)]
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public Patient Patient { get; set; }
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[JsonProperty("performanceStatus", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<PerformanceStatus> PerformanceStatus { get; set; }
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[JsonProperty("priorDiagnosticReports", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<PriorDiagnosticReport> PriorDiagnosticReports { get; set; }
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[JsonProperty("responses", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<Response> Responses { get; set; }
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[JsonProperty("specimens", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<TumorSpecimen> Specimens { get; set; }
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[JsonProperty("systemicTherapies", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<SystemicTherapy> SystemicTherapies { get; set; }
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}
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public partial class MtbCarePlan
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{
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[JsonProperty("geneticCounselingRecommendation", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public GeneticCounselingRecommendation GeneticCounselingRecommendation { get; set; }
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[JsonProperty("histologyReevaluationRequests", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<HistologyReevaluationRequest> HistologyReevaluationRequests { get; set; }
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[JsonProperty("id", Required = Required.Always)]
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public string Id { get; set; }
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[JsonProperty("issuedOn", Required = Required.Always)]
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public DateTimeOffset IssuedOn { get; set; }
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[JsonProperty("medicationRecommendations", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<MtbMedicationRecommendation> MedicationRecommendations { get; set; }
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[JsonProperty("noSequencingPerformedReason", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public CarePlanNoSequencingPerformedReasonCoding NoSequencingPerformedReason { get; set; }
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[JsonProperty("notes", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<string> Notes { get; set; }
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[JsonProperty("patient", Required = Required.Always)]
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public Reference Patient { get; set; }
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[JsonProperty("procedureRecommendations", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<ProcedureRecommendation> ProcedureRecommendations { get; set; }
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[JsonProperty("reason", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public Reference Reason { get; set; }
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[JsonProperty("rebiopsyRequests", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<RebiopsyRequest> RebiopsyRequests { get; set; }
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[JsonProperty("recommendationsMissingReason", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public MtbCarePlanRecommendationsMissingReasonCoding RecommendationsMissingReason { get; set; }
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[JsonProperty("studyEnrollmentRecommendations", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<MtbStudyEnrollmentRecommendation> StudyEnrollmentRecommendations { get; set; }
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}
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public partial class GeneticCounselingRecommendation
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{
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[JsonProperty("id", Required = Required.Always)]
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public string Id { get; set; }
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[JsonProperty("issuedOn", Required = Required.Always)]
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public DateTimeOffset IssuedOn { get; set; }
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[JsonProperty("patient", Required = Required.Always)]
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public Reference Patient { get; set; }
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[JsonProperty("reason", Required = Required.Always)]
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public GeneticCounselingRecommendationReasonCoding Reason { get; set; }
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}
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public partial class Reference
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{
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("id", Required = Required.Always)]
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public string Id { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("type", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Type { get; set; }
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}
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public partial class GeneticCounselingRecommendationReasonCoding
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{
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[JsonProperty("code", Required = Required.Always)]
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public GeneticCounselingRecommendationReasonCodingCode Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class HistologyReevaluationRequest
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{
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[JsonProperty("id", Required = Required.Always)]
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public string Id { get; set; }
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[JsonProperty("issuedOn", Required = Required.Always)]
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public DateTimeOffset IssuedOn { get; set; }
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[JsonProperty("patient", Required = Required.Always)]
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public Reference Patient { get; set; }
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[JsonProperty("specimen", Required = Required.Always)]
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public Reference Specimen { get; set; }
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}
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public partial class MtbMedicationRecommendation
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{
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[JsonProperty("category", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public MtbMedicationRecommendationCategoryCoding Category { get; set; }
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[JsonProperty("id", Required = Required.Always)]
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public string Id { get; set; }
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[JsonProperty("issuedOn", Required = Required.Always)]
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public DateTimeOffset IssuedOn { get; set; }
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[JsonProperty("levelOfEvidence", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public LevelOfEvidence LevelOfEvidence { get; set; }
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[JsonProperty("medication", Required = Required.Always)]
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public List<AtcUnregisteredMedicationCoding> Medication { get; set; }
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[JsonProperty("patient", Required = Required.Always)]
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public Reference Patient { get; set; }
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[JsonProperty("priority", Required = Required.Always)]
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public RecommendationPriorityCoding Priority { get; set; }
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[JsonProperty("reason", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public Reference Reason { get; set; }
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[JsonProperty("supportingVariants", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<GeneAlterationReference> SupportingVariants { get; set; }
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[JsonProperty("useType", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public MtbMedicationRecommendationUseTypeCoding UseType { get; set; }
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}
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public partial class MtbMedicationRecommendationCategoryCoding
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{
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[JsonProperty("code", Required = Required.Always)]
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public MtbMedicationRecommendationCategoryCodingCode Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class LevelOfEvidence
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{
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[JsonProperty("addendums", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<LevelOfEvidenceAddendumCoding> Addendums { get; set; }
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[JsonProperty("grading", Required = Required.Always)]
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public LevelOfEvidenceGradingCoding Grading { get; set; }
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[JsonProperty("publications", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<PublicationReference> Publications { get; set; }
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}
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public partial class LevelOfEvidenceAddendumCoding
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{
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[JsonProperty("code", Required = Required.Always)]
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public LevelOfEvidenceAddendumCodingCode Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class LevelOfEvidenceGradingCoding
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{
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[JsonProperty("code", Required = Required.Always)]
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public LevelOfEvidenceGradingCodingCode Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class PublicationReference
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{
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("id", Required = Required.Always)]
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public string Id { get; set; }
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[JsonProperty("system", Required = Required.Always)]
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public PublicationSystem System { get; set; }
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[JsonProperty("type", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Type { get; set; }
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}
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public partial class AtcUnregisteredMedicationCoding
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{
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[JsonProperty("code", Required = Required.Always)]
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public string Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.Always)]
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public RequestedMedicationSystem System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class RecommendationPriorityCoding
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{
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[JsonProperty("code", Required = Required.Always)]
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public RecommendationPriorityCodingCode Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class GeneAlterationReference
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{
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("gene", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public Coding Gene { get; set; }
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[JsonProperty("variant", Required = Required.Always)]
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public Reference Variant { get; set; }
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}
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public partial class Coding
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{
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[JsonProperty("code", Required = Required.Always)]
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public string Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class MtbMedicationRecommendationUseTypeCoding
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{
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[JsonProperty("code", Required = Required.Always)]
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public MtbMedicationRecommendationUseTypeCodingCode Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class CarePlanNoSequencingPerformedReasonCoding
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{
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[JsonProperty("code", Required = Required.Always)]
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public NoSequencingPerformedReasonCode Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class ProcedureRecommendation
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{
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[JsonProperty("code", Required = Required.Always)]
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public MtbProcedureRecommendationCategoryCoding Code { get; set; }
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[JsonProperty("id", Required = Required.Always)]
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public string Id { get; set; }
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[JsonProperty("issuedOn", Required = Required.Always)]
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public DateTimeOffset IssuedOn { get; set; }
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[JsonProperty("levelOfEvidence", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public LevelOfEvidence LevelOfEvidence { get; set; }
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[JsonProperty("patient", Required = Required.Always)]
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public Reference Patient { get; set; }
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[JsonProperty("priority", Required = Required.Always)]
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public RecommendationPriorityCoding Priority { get; set; }
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[JsonProperty("reason", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public Reference Reason { get; set; }
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[JsonProperty("supportingVariants", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<GeneAlterationReference> SupportingVariants { get; set; }
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}
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public partial class MtbProcedureRecommendationCategoryCoding
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{
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[JsonProperty("code", Required = Required.Always)]
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public MtbProcedureRecommendationCategoryCodingCode Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class RebiopsyRequest
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{
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[JsonProperty("id", Required = Required.Always)]
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public string Id { get; set; }
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[JsonProperty("issuedOn", Required = Required.Always)]
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public DateTimeOffset IssuedOn { get; set; }
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[JsonProperty("patient", Required = Required.Always)]
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public Reference Patient { get; set; }
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[JsonProperty("tumorEntity", Required = Required.Always)]
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public Reference TumorEntity { get; set; }
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}
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public partial class MtbCarePlanRecommendationsMissingReasonCoding
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{
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[JsonProperty("code", Required = Required.Always)]
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public MtbCarePlanRecommendationsMissingReasonCodingCode Code { get; set; }
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[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Display { get; set; }
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[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string System { get; set; }
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[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public string Version { get; set; }
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}
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public partial class MtbStudyEnrollmentRecommendation
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{
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[JsonProperty("id", Required = Required.Always)]
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public string Id { get; set; }
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[JsonProperty("issuedOn", Required = Required.Always)]
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public DateTimeOffset IssuedOn { get; set; }
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[JsonProperty("levelOfEvidence", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public LevelOfEvidence LevelOfEvidence { get; set; }
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[JsonProperty("medication", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
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public List<AtcUnregisteredMedicationCoding> Medication { get; set; }
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[JsonProperty("patient", Required = Required.Always)]
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public Reference Patient { get; set; }
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[JsonProperty("priority", Required = Required.Always)]
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public RecommendationPriorityCoding Priority { get; set; }
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[JsonProperty("reason", Required = Required.Always)]
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public Reference Reason { get; set; }
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[JsonProperty("study", Required = Required.Always)]
|
|
public List<StudyReference> Study { get; set; }
|
|
|
|
[JsonProperty("supportingVariants", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<GeneAlterationReference> SupportingVariants { get; set; }
|
|
}
|
|
|
|
public partial class StudyReference
|
|
{
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.Always)]
|
|
public StudySystem System { get; set; }
|
|
|
|
[JsonProperty("type", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Type { get; set; }
|
|
}
|
|
|
|
public partial class ClaimResponse
|
|
{
|
|
[JsonProperty("claim", Required = Required.Always)]
|
|
public Reference Claim { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("issuedOn", Required = Required.Always)]
|
|
public DateTimeOffset IssuedOn { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("status", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public ClaimResponseStatusCoding Status { get; set; }
|
|
|
|
[JsonProperty("statusReason", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<ClaimResponseStatusReasonCoding> StatusReason { get; set; }
|
|
}
|
|
|
|
public partial class ClaimResponseStatusCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public ClaimResponseStatusCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class ClaimResponseStatusReasonCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public ClaimResponseStatusReasonCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class Claim
|
|
{
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("issuedOn", Required = Required.Always)]
|
|
public DateTimeOffset IssuedOn { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("recommendation", Required = Required.Always)]
|
|
public Reference Recommendation { get; set; }
|
|
|
|
[JsonProperty("requestedMedication", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<AtcUnregisteredMedicationCoding> RequestedMedication { get; set; }
|
|
|
|
[JsonProperty("stage", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public ClaimStageCoding Stage { get; set; }
|
|
}
|
|
|
|
public partial class ClaimStageCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public ClaimStageCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class MtbDiagnosis
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public Coding Code { get; set; }
|
|
|
|
[JsonProperty("germlineCodes", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<Coding> GermlineCodes { get; set; }
|
|
|
|
[JsonProperty("grading", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Grading Grading { get; set; }
|
|
|
|
[JsonProperty("guidelineTreatmentStatus", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public MtbDiagnosisGuidelineTreatmentStatusCoding GuidelineTreatmentStatus { get; set; }
|
|
|
|
[JsonProperty("histology", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<Reference> Histology { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("notes", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<string> Notes { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("recordedOn", Required = Required.Always)]
|
|
public DateTimeOffset RecordedOn { get; set; }
|
|
|
|
[JsonProperty("staging", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Staging Staging { get; set; }
|
|
|
|
[JsonProperty("topography", Required = Required.Always)]
|
|
public Coding Topography { get; set; }
|
|
|
|
[JsonProperty("type", Required = Required.Always)]
|
|
public TypeClass Type { get; set; }
|
|
}
|
|
|
|
public partial class Grading
|
|
{
|
|
[JsonProperty("history", Required = Required.Always)]
|
|
public List<TumorGrading> History { get; set; }
|
|
}
|
|
|
|
public partial class TumorGrading
|
|
{
|
|
[JsonProperty("codes", Required = Required.Always)]
|
|
public List<Coding> Codes { get; set; }
|
|
|
|
[JsonProperty("date", Required = Required.Always)]
|
|
public DateTimeOffset Date { get; set; }
|
|
}
|
|
|
|
public partial class MtbDiagnosisGuidelineTreatmentStatusCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public MtbDiagnosisGuidelineTreatmentStatusCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class Staging
|
|
{
|
|
[JsonProperty("history", Required = Required.Always)]
|
|
public List<TumorStaging> History { get; set; }
|
|
}
|
|
|
|
public partial class TumorStaging
|
|
{
|
|
[JsonProperty("date", Required = Required.Always)]
|
|
public DateTimeOffset Date { get; set; }
|
|
|
|
[JsonProperty("method", Required = Required.Always)]
|
|
public TumorStagingMethodCoding Method { get; set; }
|
|
|
|
[JsonProperty("otherClassifications", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<Coding> OtherClassifications { get; set; }
|
|
|
|
[JsonProperty("tnmClassification", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public TnmClassification TnmClassification { get; set; }
|
|
}
|
|
|
|
public partial class TumorStagingMethodCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public TumorStagingMethodCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class TnmClassification
|
|
{
|
|
[JsonProperty("metastasis", Required = Required.Always)]
|
|
public Coding Metastasis { get; set; }
|
|
|
|
[JsonProperty("nodes", Required = Required.Always)]
|
|
public Coding Nodes { get; set; }
|
|
|
|
[JsonProperty("tumor", Required = Required.Always)]
|
|
public Coding Tumor { get; set; }
|
|
}
|
|
|
|
public partial class TypeClass
|
|
{
|
|
[JsonProperty("history", Required = Required.Always)]
|
|
public List<History> History { get; set; }
|
|
}
|
|
|
|
public partial class History
|
|
{
|
|
[JsonProperty("date", Required = Required.Always)]
|
|
public DateTimeOffset Date { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public MtbDiagnosisCoding Value { get; set; }
|
|
}
|
|
|
|
public partial class MtbDiagnosisCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public ValueCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class MtbEpisodeOfCare
|
|
{
|
|
[JsonProperty("diagnoses", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<Reference> Diagnoses { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("period", Required = Required.Always)]
|
|
public PeriodDate Period { get; set; }
|
|
}
|
|
|
|
public partial class PeriodDate
|
|
{
|
|
[JsonProperty("end", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public DateTimeOffset? End { get; set; }
|
|
|
|
[JsonProperty("start", Required = Required.Always)]
|
|
public DateTimeOffset Start { get; set; }
|
|
}
|
|
|
|
public partial class FamilyMemberHistory
|
|
{
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("relationship", Required = Required.Always)]
|
|
public FamilyMemberHistoryRelationshipTypeCoding Relationship { get; set; }
|
|
}
|
|
|
|
public partial class FamilyMemberHistoryRelationshipTypeCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public FamilyMemberHistoryRelationshipTypeCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class FollowUp
|
|
{
|
|
[JsonProperty("date", Required = Required.Always)]
|
|
public DateTimeOffset Date { get; set; }
|
|
|
|
[JsonProperty("lastContactDate", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public DateTimeOffset? LastContactDate { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("patientStatus", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public FollowUpPatientStatusCoding PatientStatus { get; set; }
|
|
}
|
|
|
|
public partial class FollowUpPatientStatusCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public FollowUpPatientStatusCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class OncoProcedure
|
|
{
|
|
[JsonProperty("basedOn", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Reference BasedOn { get; set; }
|
|
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public OncoProcedureCoding Code { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("intent", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public MtbTherapyIntentCoding Intent { get; set; }
|
|
|
|
[JsonProperty("notes", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<string> Notes { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("period", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public PeriodDate Period { get; set; }
|
|
|
|
[JsonProperty("reason", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Reference Reason { get; set; }
|
|
|
|
[JsonProperty("recordedOn", Required = Required.Always)]
|
|
public DateTimeOffset RecordedOn { get; set; }
|
|
|
|
[JsonProperty("status", Required = Required.Always)]
|
|
public TherapyStatusCoding Status { get; set; }
|
|
|
|
[JsonProperty("statusReason", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public MtbTherapyStatusReasonCoding StatusReason { get; set; }
|
|
|
|
[JsonProperty("therapyLine", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public long? TherapyLine { get; set; }
|
|
}
|
|
|
|
public partial class OncoProcedureCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public OncoProcedureCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class MtbTherapyIntentCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public MtbTherapyIntentCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class TherapyStatusCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public TherapyStatusCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class MtbTherapyStatusReasonCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public MtbTherapyStatusReasonCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class MtbSystemicTherapy
|
|
{
|
|
[JsonProperty("basedOn", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Reference BasedOn { get; set; }
|
|
|
|
[JsonProperty("category", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public MtbSystemicTherapyCategoryCoding Category { get; set; }
|
|
|
|
[JsonProperty("dosage", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public MtbSystemicTherapyDosageDensityCoding Dosage { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("intent", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public MtbTherapyIntentCoding Intent { get; set; }
|
|
|
|
[JsonProperty("medication", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<AtcUnregisteredMedicationCoding> Medication { get; set; }
|
|
|
|
[JsonProperty("notes", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<string> Notes { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("period", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public PeriodDate Period { get; set; }
|
|
|
|
[JsonProperty("reason", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Reference Reason { get; set; }
|
|
|
|
[JsonProperty("recommendationFulfillmentStatus", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public MtbSystemicTherapyRecommendationFulfillmentStatusCoding RecommendationFulfillmentStatus { get; set; }
|
|
|
|
[JsonProperty("recordedOn", Required = Required.Always)]
|
|
public DateTimeOffset RecordedOn { get; set; }
|
|
|
|
[JsonProperty("status", Required = Required.Always)]
|
|
public TherapyStatusCoding Status { get; set; }
|
|
|
|
[JsonProperty("statusReason", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public MtbTherapyStatusReasonCoding StatusReason { get; set; }
|
|
|
|
[JsonProperty("therapyLine", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public long? TherapyLine { get; set; }
|
|
}
|
|
|
|
public partial class MtbSystemicTherapyCategoryCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public MtbSystemicTherapyCategoryCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class MtbSystemicTherapyDosageDensityCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public MtbSystemicTherapyDosageDensityCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class MtbSystemicTherapyRecommendationFulfillmentStatusCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class HistologyReport
|
|
{
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("issuedOn", Required = Required.Always)]
|
|
public DateTimeOffset IssuedOn { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("results", Required = Required.Always)]
|
|
public HistologyReportResults Results { get; set; }
|
|
|
|
[JsonProperty("specimen", Required = Required.Always)]
|
|
public Reference Specimen { get; set; }
|
|
}
|
|
|
|
public partial class HistologyReportResults
|
|
{
|
|
[JsonProperty("tumorCellContent", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public TumorCellContent TumorCellContent { get; set; }
|
|
|
|
[JsonProperty("tumorMorphology", Required = Required.Always)]
|
|
public TumorMorphology TumorMorphology { get; set; }
|
|
}
|
|
|
|
public partial class TumorCellContent
|
|
{
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("method", Required = Required.Always)]
|
|
public TumorCellContentMethodCoding Method { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("specimen", Required = Required.Always)]
|
|
public Reference Specimen { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public double Value { get; set; }
|
|
}
|
|
|
|
public partial class TumorCellContentMethodCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public TumorCellContentMethodCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class TumorMorphology
|
|
{
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("note", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Note { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("specimen", Required = Required.Always)]
|
|
public Reference Specimen { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public Coding Value { get; set; }
|
|
}
|
|
|
|
public partial class IhcReport
|
|
{
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("issuedOn", Required = Required.Always)]
|
|
public DateTimeOffset IssuedOn { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("results", Required = Required.Always)]
|
|
public IhcReportResults Results { get; set; }
|
|
|
|
[JsonProperty("specimen", Required = Required.Always)]
|
|
public Reference Specimen { get; set; }
|
|
}
|
|
|
|
public partial class IhcReportResults
|
|
{
|
|
[JsonProperty("msiMmr", Required = Required.Always)]
|
|
public List<MsiMmr> MsiMmr { get; set; }
|
|
|
|
[JsonProperty("proteinExpression", Required = Required.Always)]
|
|
public List<ProteinExpression> ProteinExpression { get; set; }
|
|
}
|
|
|
|
public partial class MsiMmr
|
|
{
|
|
[JsonProperty("icScore", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public ProteinExpressionIcScoreCoding IcScore { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("protein", Required = Required.Always)]
|
|
public Coding Protein { get; set; }
|
|
|
|
[JsonProperty("tcScore", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public ProteinExpressionTcScoreCoding TcScore { get; set; }
|
|
|
|
[JsonProperty("tpsScore", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public long? TpsScore { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public ProteinExpressionResultCoding Value { get; set; }
|
|
}
|
|
|
|
public partial class ProteinExpressionIcScoreCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public ProteinExpressionIcScoreCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class ProteinExpressionTcScoreCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public ProteinExpressionTcScoreCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class ProteinExpressionResultCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public ProteinExpressionResultCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class ProteinExpression
|
|
{
|
|
[JsonProperty("icScore", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public ProteinExpressionIcScoreCoding IcScore { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("protein", Required = Required.Always)]
|
|
public Coding Protein { get; set; }
|
|
|
|
[JsonProperty("tcScore", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public ProteinExpressionTcScoreCoding TcScore { get; set; }
|
|
|
|
[JsonProperty("tpsScore", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public long? TpsScore { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public ProteinExpressionResultCoding Value { get; set; }
|
|
}
|
|
|
|
public partial class MvhMetadata
|
|
{
|
|
[JsonProperty("modelProjectConsent", Required = Required.Always)]
|
|
public ModelProjectConsent ModelProjectConsent { get; set; }
|
|
|
|
[JsonProperty("researchConsents", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<Dictionary<string, object>> ResearchConsents { get; set; }
|
|
|
|
[JsonProperty("transferTAN", Required = Required.Always)]
|
|
public string TransferTan { get; set; }
|
|
|
|
[JsonProperty("type", Required = Required.Always)]
|
|
public MvhSubmissionType Type { get; set; }
|
|
}
|
|
|
|
public partial class ModelProjectConsent
|
|
{
|
|
[JsonProperty("date", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public DateTimeOffset? Date { get; set; }
|
|
|
|
[JsonProperty("provisions", Required = Required.Always)]
|
|
public List<Provision> Provisions { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.Always)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class Provision
|
|
{
|
|
[JsonProperty("date", Required = Required.Always)]
|
|
public DateTimeOffset Date { get; set; }
|
|
|
|
[JsonProperty("purpose", Required = Required.Always)]
|
|
public ModelProjectConsentPurpose Purpose { get; set; }
|
|
|
|
[JsonProperty("type", Required = Required.Always)]
|
|
public ConsentProvision Type { get; set; }
|
|
}
|
|
|
|
public partial class SomaticNgsReport
|
|
{
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("issuedOn", Required = Required.Always)]
|
|
public DateTimeOffset IssuedOn { get; set; }
|
|
|
|
[JsonProperty("metadata", Required = Required.Always)]
|
|
public List<NgsReportMetadata> Metadata { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("results", Required = Required.Always)]
|
|
public NgsReportResults Results { get; set; }
|
|
|
|
[JsonProperty("specimen", Required = Required.Always)]
|
|
public Reference Specimen { get; set; }
|
|
|
|
[JsonProperty("type", Required = Required.Always)]
|
|
public NgsReportCoding Type { get; set; }
|
|
}
|
|
|
|
public partial class NgsReportMetadata
|
|
{
|
|
[JsonProperty("kitManufacturer", Required = Required.Always)]
|
|
public string KitManufacturer { get; set; }
|
|
|
|
[JsonProperty("kitType", Required = Required.Always)]
|
|
public string KitType { get; set; }
|
|
|
|
[JsonProperty("pipeline", Required = Required.Always)]
|
|
public Uri Pipeline { get; set; }
|
|
|
|
[JsonProperty("referenceGenome", Required = Required.Always)]
|
|
public string ReferenceGenome { get; set; }
|
|
|
|
[JsonProperty("sequencer", Required = Required.Always)]
|
|
public string Sequencer { get; set; }
|
|
}
|
|
|
|
public partial class NgsReportResults
|
|
{
|
|
[JsonProperty("brcaness", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Brcaness Brcaness { get; set; }
|
|
|
|
[JsonProperty("copyNumberVariants", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<Cnv> CopyNumberVariants { get; set; }
|
|
|
|
[JsonProperty("dnaFusions", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<DnaFusion> DnaFusions { get; set; }
|
|
|
|
[JsonProperty("hrdScore", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public HrdScore HrdScore { get; set; }
|
|
|
|
[JsonProperty("rnaFusions", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<RnaFusion> RnaFusions { get; set; }
|
|
|
|
[JsonProperty("rnaSeqs", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<RnaSeq> RnaSeqs { get; set; }
|
|
|
|
[JsonProperty("simpleVariants", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<Snv> SimpleVariants { get; set; }
|
|
|
|
[JsonProperty("tmb", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Tmb Tmb { get; set; }
|
|
|
|
[JsonProperty("tumorCellContent", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public TumorCellContent TumorCellContent { get; set; }
|
|
}
|
|
|
|
public partial class Brcaness
|
|
{
|
|
[JsonProperty("confidenceRange", Required = Required.Always)]
|
|
public ConfidenceRange ConfidenceRange { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("specimen", Required = Required.Always)]
|
|
public Reference Specimen { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public double Value { get; set; }
|
|
}
|
|
|
|
public partial class ConfidenceRange
|
|
{
|
|
[JsonProperty("max", Required = Required.Always)]
|
|
public double Max { get; set; }
|
|
|
|
[JsonProperty("min", Required = Required.Always)]
|
|
public double Min { get; set; }
|
|
}
|
|
|
|
public partial class Cnv
|
|
{
|
|
[JsonProperty("chromosome", Required = Required.Always)]
|
|
public Chromosome Chromosome { get; set; }
|
|
|
|
[JsonProperty("cnA", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public double? CnA { get; set; }
|
|
|
|
[JsonProperty("cnB", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public double? CnB { get; set; }
|
|
|
|
[JsonProperty("copyNumberNeutralLoH", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<Coding> CopyNumberNeutralLoH { get; set; }
|
|
|
|
[JsonProperty("endRange", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public EndRange EndRange { get; set; }
|
|
|
|
[JsonProperty("externalIds", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<VariantExternalId> ExternalIds { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("localization", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<BaseVariantLocalizationCoding> Localization { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("relativeCopyNumber", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public double? RelativeCopyNumber { get; set; }
|
|
|
|
[JsonProperty("reportedAffectedGenes", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<Coding> ReportedAffectedGenes { get; set; }
|
|
|
|
[JsonProperty("reportedFocality", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string ReportedFocality { get; set; }
|
|
|
|
[JsonProperty("startRange", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public StartRange StartRange { get; set; }
|
|
|
|
[JsonProperty("totalCopyNumber", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public long? TotalCopyNumber { get; set; }
|
|
|
|
[JsonProperty("type", Required = Required.Always)]
|
|
public CnvCoding Type { get; set; }
|
|
}
|
|
|
|
public partial class EndRange
|
|
{
|
|
[JsonProperty("end", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public double? End { get; set; }
|
|
|
|
[JsonProperty("start", Required = Required.Always)]
|
|
public double Start { get; set; }
|
|
}
|
|
|
|
public partial class VariantExternalId
|
|
{
|
|
[JsonProperty("system", Required = Required.Always)]
|
|
public ExternalIdSystem System { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public string Value { get; set; }
|
|
}
|
|
|
|
public partial class BaseVariantLocalizationCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public BaseVariantLocalizationCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class StartRange
|
|
{
|
|
[JsonProperty("end", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public double? End { get; set; }
|
|
|
|
[JsonProperty("start", Required = Required.Always)]
|
|
public double Start { get; set; }
|
|
}
|
|
|
|
public partial class CnvCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public CnvCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class DnaFusion
|
|
{
|
|
[JsonProperty("externalIds", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<VariantExternalId> ExternalIds { get; set; }
|
|
|
|
[JsonProperty("fusionPartner3prime", Required = Required.Always)]
|
|
public DnaFusionFusionPartner3Prime FusionPartner3Prime { get; set; }
|
|
|
|
[JsonProperty("fusionPartner5prime", Required = Required.Always)]
|
|
public DnaFusionFusionPartner5Prime FusionPartner5Prime { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("localization", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<BaseVariantLocalizationCoding> Localization { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("reportedNumReads", Required = Required.Always)]
|
|
public long ReportedNumReads { get; set; }
|
|
}
|
|
|
|
public partial class DnaFusionFusionPartner3Prime
|
|
{
|
|
[JsonProperty("chromosome", Required = Required.Always)]
|
|
public Chromosome Chromosome { get; set; }
|
|
|
|
[JsonProperty("gene", Required = Required.Always)]
|
|
public Coding Gene { get; set; }
|
|
|
|
[JsonProperty("position", Required = Required.Always)]
|
|
public double Position { get; set; }
|
|
}
|
|
|
|
public partial class DnaFusionFusionPartner5Prime
|
|
{
|
|
[JsonProperty("chromosome", Required = Required.Always)]
|
|
public Chromosome Chromosome { get; set; }
|
|
|
|
[JsonProperty("gene", Required = Required.Always)]
|
|
public Coding Gene { get; set; }
|
|
|
|
[JsonProperty("position", Required = Required.Always)]
|
|
public double Position { get; set; }
|
|
}
|
|
|
|
public partial class HrdScore
|
|
{
|
|
[JsonProperty("components", Required = Required.Always)]
|
|
public Components Components { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("interpretation", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public HrdScoreInterpretationCoding Interpretation { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("specimen", Required = Required.Always)]
|
|
public Reference Specimen { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public double Value { get; set; }
|
|
}
|
|
|
|
public partial class Components
|
|
{
|
|
[JsonProperty("loh", Required = Required.Always)]
|
|
public double Loh { get; set; }
|
|
|
|
[JsonProperty("lst", Required = Required.Always)]
|
|
public double Lst { get; set; }
|
|
|
|
[JsonProperty("tai", Required = Required.Always)]
|
|
public double Tai { get; set; }
|
|
}
|
|
|
|
public partial class HrdScoreInterpretationCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public InterpretationCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class RnaFusion
|
|
{
|
|
[JsonProperty("effect", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Effect { get; set; }
|
|
|
|
[JsonProperty("externalIds", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<VariantExternalId> ExternalIds { get; set; }
|
|
|
|
[JsonProperty("fusionPartner3prime", Required = Required.Always)]
|
|
public RnaFusionFusionPartner3Prime FusionPartner3Prime { get; set; }
|
|
|
|
[JsonProperty("fusionPartner5prime", Required = Required.Always)]
|
|
public RnaFusionFusionPartner5Prime FusionPartner5Prime { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("localization", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<BaseVariantLocalizationCoding> Localization { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("reportedNumReads", Required = Required.Always)]
|
|
public long ReportedNumReads { get; set; }
|
|
}
|
|
|
|
public partial class RnaFusionFusionPartner3Prime
|
|
{
|
|
[JsonProperty("exonId", Required = Required.Always)]
|
|
public string ExonId { get; set; }
|
|
|
|
[JsonProperty("gene", Required = Required.Always)]
|
|
public Coding Gene { get; set; }
|
|
|
|
[JsonProperty("position", Required = Required.Always)]
|
|
public double Position { get; set; }
|
|
|
|
[JsonProperty("strand", Required = Required.Always)]
|
|
public RnaFusionStrand Strand { get; set; }
|
|
|
|
[JsonProperty("transcriptId", Required = Required.Always)]
|
|
public TranscriptId TranscriptId { get; set; }
|
|
}
|
|
|
|
public partial class TranscriptId
|
|
{
|
|
[JsonProperty("system", Required = Required.Always)]
|
|
public TranscriptIdSystem System { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public string Value { get; set; }
|
|
}
|
|
|
|
public partial class RnaFusionFusionPartner5Prime
|
|
{
|
|
[JsonProperty("exonId", Required = Required.Always)]
|
|
public string ExonId { get; set; }
|
|
|
|
[JsonProperty("gene", Required = Required.Always)]
|
|
public Coding Gene { get; set; }
|
|
|
|
[JsonProperty("position", Required = Required.Always)]
|
|
public double Position { get; set; }
|
|
|
|
[JsonProperty("strand", Required = Required.Always)]
|
|
public RnaFusionStrand Strand { get; set; }
|
|
|
|
[JsonProperty("transcriptId", Required = Required.Always)]
|
|
public TranscriptId TranscriptId { get; set; }
|
|
}
|
|
|
|
public partial class RnaSeq
|
|
{
|
|
[JsonProperty("cohortRanking", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public long? CohortRanking { get; set; }
|
|
|
|
[JsonProperty("externalIds", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<VariantExternalId> ExternalIds { get; set; }
|
|
|
|
[JsonProperty("gene", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Coding Gene { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("librarySize", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public long? LibrarySize { get; set; }
|
|
|
|
[JsonProperty("localization", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<BaseVariantLocalizationCoding> Localization { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("rawCounts", Required = Required.Always)]
|
|
public long RawCounts { get; set; }
|
|
|
|
[JsonProperty("tissueCorrectedExpression", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public bool? TissueCorrectedExpression { get; set; }
|
|
|
|
[JsonProperty("transcriptId", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public TranscriptId TranscriptId { get; set; }
|
|
|
|
[JsonProperty("transcriptsPerMillion", Required = Required.Always)]
|
|
public double TranscriptsPerMillion { get; set; }
|
|
|
|
[JsonProperty("variant", Required = Required.Always)]
|
|
public Reference Variant { get; set; }
|
|
}
|
|
|
|
public partial class Snv
|
|
{
|
|
[JsonProperty("allelicFrequency", Required = Required.Always)]
|
|
public double AllelicFrequency { get; set; }
|
|
|
|
[JsonProperty("altAllele", Required = Required.Always)]
|
|
public string AltAllele { get; set; }
|
|
|
|
[JsonProperty("chromosome", Required = Required.Always)]
|
|
public Chromosome Chromosome { get; set; }
|
|
|
|
[JsonProperty("dnaChange", Required = Required.Always)]
|
|
public string DnaChange { get; set; }
|
|
|
|
[JsonProperty("exonId", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string ExonId { get; set; }
|
|
|
|
[JsonProperty("externalIds", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<VariantExternalId> ExternalIds { get; set; }
|
|
|
|
[JsonProperty("gene", Required = Required.Always)]
|
|
public Coding Gene { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("interpretation", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public ClinVarCoding Interpretation { get; set; }
|
|
|
|
[JsonProperty("localization", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<BaseVariantLocalizationCoding> Localization { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("position", Required = Required.Always)]
|
|
public Position Position { get; set; }
|
|
|
|
[JsonProperty("proteinChange", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string ProteinChange { get; set; }
|
|
|
|
[JsonProperty("readDepth", Required = Required.Always)]
|
|
public long ReadDepth { get; set; }
|
|
|
|
[JsonProperty("refAllele", Required = Required.Always)]
|
|
public string RefAllele { get; set; }
|
|
|
|
[JsonProperty("transcriptId", Required = Required.Always)]
|
|
public TranscriptId TranscriptId { get; set; }
|
|
}
|
|
|
|
public partial class ClinVarCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public ClinVarCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class Position
|
|
{
|
|
[JsonProperty("end", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public double? End { get; set; }
|
|
|
|
[JsonProperty("start", Required = Required.Always)]
|
|
public double Start { get; set; }
|
|
}
|
|
|
|
public partial class Tmb
|
|
{
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("interpretation", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public TmbInterpretationCoding Interpretation { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("specimen", Required = Required.Always)]
|
|
public Reference Specimen { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public TmbResult Value { get; set; }
|
|
}
|
|
|
|
public partial class TmbInterpretationCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public InterpretationCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class TmbResult
|
|
{
|
|
[JsonProperty("unit", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Unit { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public double Value { get; set; }
|
|
}
|
|
|
|
public partial class NgsReportCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public NgsReportCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class Patient
|
|
{
|
|
[JsonProperty("address", Required = Required.Always)]
|
|
public Address Address { get; set; }
|
|
|
|
[JsonProperty("age", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Age Age { get; set; }
|
|
|
|
[JsonProperty("birthDate", Required = Required.Always)]
|
|
public DateTimeOffset BirthDate { get; set; }
|
|
|
|
[JsonProperty("dateOfDeath", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public DateTimeOffset? DateOfDeath { get; set; }
|
|
|
|
[JsonProperty("gender", Required = Required.Always)]
|
|
public GenderCoding Gender { get; set; }
|
|
|
|
[JsonProperty("healthInsurance", Required = Required.Always)]
|
|
public HealthInsurance HealthInsurance { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("managingSite", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Coding ManagingSite { get; set; }
|
|
|
|
[JsonProperty("vitalStatus", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public VitalStatusCoding VitalStatus { get; set; }
|
|
}
|
|
|
|
public partial class Address
|
|
{
|
|
[JsonProperty("municipalityCode", Required = Required.Always)]
|
|
public string MunicipalityCode { get; set; }
|
|
}
|
|
|
|
public partial class Age
|
|
{
|
|
[JsonProperty("unit", Required = Required.Always)]
|
|
public Unit Unit { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public double Value { get; set; }
|
|
}
|
|
|
|
public partial class GenderCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public GenderCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class HealthInsurance
|
|
{
|
|
[JsonProperty("reference", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Reference Reference { get; set; }
|
|
|
|
[JsonProperty("type", Required = Required.Always)]
|
|
public HealthInsuranceCoding Type { get; set; }
|
|
}
|
|
|
|
public partial class HealthInsuranceCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public HealthInsuranceCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class VitalStatusCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public VitalStatusCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class PerformanceStatus
|
|
{
|
|
[JsonProperty("effectiveDate", Required = Required.Always)]
|
|
public DateTimeOffset EffectiveDate { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public EcogCoding Value { get; set; }
|
|
}
|
|
|
|
public partial class EcogCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public EcogCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class PriorDiagnosticReport
|
|
{
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("issuedOn", Required = Required.Always)]
|
|
public DateTimeOffset IssuedOn { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("performer", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Reference Performer { get; set; }
|
|
|
|
[JsonProperty("results", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public List<string> Results { get; set; }
|
|
|
|
[JsonProperty("specimen", Required = Required.Always)]
|
|
public Reference Specimen { get; set; }
|
|
|
|
[JsonProperty("type", Required = Required.Always)]
|
|
public MolecularDiagnosticReportCoding Type { get; set; }
|
|
}
|
|
|
|
public partial class MolecularDiagnosticReportCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public MolecularDiagnosticReportCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class Response
|
|
{
|
|
[JsonProperty("effectiveDate", Required = Required.Always)]
|
|
public DateTimeOffset EffectiveDate { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("method", Required = Required.Always)]
|
|
public ResponseMethodCoding Method { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("therapy", Required = Required.Always)]
|
|
public Reference Therapy { get; set; }
|
|
|
|
[JsonProperty("value", Required = Required.Always)]
|
|
public RecistCoding Value { get; set; }
|
|
}
|
|
|
|
public partial class ResponseMethodCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public ResponseMethodCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class RecistCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public RecistCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class TumorSpecimen
|
|
{
|
|
[JsonProperty("collection", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public Collection Collection { get; set; }
|
|
|
|
[JsonProperty("diagnosis", Required = Required.Always)]
|
|
public Reference Diagnosis { get; set; }
|
|
|
|
[JsonProperty("id", Required = Required.Always)]
|
|
public string Id { get; set; }
|
|
|
|
[JsonProperty("patient", Required = Required.Always)]
|
|
public Reference Patient { get; set; }
|
|
|
|
[JsonProperty("type", Required = Required.Always)]
|
|
public TumorSpecimenCoding Type { get; set; }
|
|
}
|
|
|
|
public partial class Collection
|
|
{
|
|
[JsonProperty("date", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public DateTimeOffset? Date { get; set; }
|
|
|
|
[JsonProperty("localization", Required = Required.Always)]
|
|
public TumorSpecimenCollectionLocalizationCoding Localization { get; set; }
|
|
|
|
[JsonProperty("method", Required = Required.Always)]
|
|
public TumorSpecimenCollectionMethodCoding Method { get; set; }
|
|
}
|
|
|
|
public partial class TumorSpecimenCollectionLocalizationCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public TumorSpecimenCollectionLocalizationCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class TumorSpecimenCollectionMethodCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public TumorSpecimenCollectionMethodCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class TumorSpecimenCoding
|
|
{
|
|
[JsonProperty("code", Required = Required.Always)]
|
|
public TumorSpecimenCodingCode Code { get; set; }
|
|
|
|
[JsonProperty("display", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Display { get; set; }
|
|
|
|
[JsonProperty("system", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string System { get; set; }
|
|
|
|
[JsonProperty("version", Required = Required.DisallowNull, NullValueHandling = NullValueHandling.Ignore)]
|
|
public string Version { get; set; }
|
|
}
|
|
|
|
public partial class SystemicTherapy
|
|
{
|
|
[JsonProperty("history", Required = Required.Always)]
|
|
public List<MtbSystemicTherapy> History { get; set; }
|
|
}
|
|
|
|
public enum GeneticCounselingRecommendationReasonCodingCode { FamilyAnamnesis, Other, SecondaryTumor, SelfAnamnesis, Unknown };
|
|
|
|
public enum MtbMedicationRecommendationCategoryCodingCode { Ch, Ho, Im, So, Sz, Zs };
|
|
|
|
public enum LevelOfEvidenceAddendumCodingCode { Is, Iv, R, Z };
|
|
|
|
public enum LevelOfEvidenceGradingCodingCode { M1A, M1B, M1C, M2A, M2B, M2C, M3, M4, Undefined };
|
|
|
|
public enum PublicationSystem { PubmedNcbiNlmNihGov, DoiOrg };
|
|
|
|
public enum RequestedMedicationSystem { HttpFhirDeCodeSystemBfarmAtc, Undefined };
|
|
|
|
public enum RecommendationPriorityCodingCode { Code1, Code2, Code3, Code4 };
|
|
|
|
public enum MtbMedicationRecommendationUseTypeCodingCode { Compassionate, InLabel, OffLabel, SecPreventive, Unknown };
|
|
|
|
public enum NoSequencingPerformedReasonCode { NonGeneticCause, NotRareDisease, Other, Psychosomatic, TargetedDiagnosticsRecommended };
|
|
|
|
public enum MtbProcedureRecommendationCategoryCodingCode { As, Op, So, St, Ws, Ww };
|
|
|
|
public enum MtbCarePlanRecommendationsMissingReasonCodingCode { NoTarget };
|
|
|
|
public enum StudySystem { Drks, Eudamed, EudraCt, Nct };
|
|
|
|
public enum ClaimResponseStatusCodingCode { Accepted, Rejected, Unknown };
|
|
|
|
public enum ClaimResponseStatusReasonCodingCode { ApprovalRevocation, FormalReasons, InclusionInStudy, InsufficientEvidence, Other, OtherTherapyRecommended, StandardTherapyNotExhausted, Unknown };
|
|
|
|
public enum ClaimStageCodingCode { FollowUpClaim, InitialClaim, Revocation, Unknown };
|
|
|
|
public enum MtbDiagnosisGuidelineTreatmentStatusCodingCode { Exhausted, Impossible, NoGuidelinesAvailable, NonExhausted, Unknown };
|
|
|
|
public enum TumorStagingMethodCodingCode { Clinical, Pathologic };
|
|
|
|
public enum ValueCode { Main, Metachronous, Secondary };
|
|
|
|
public enum FamilyMemberHistoryRelationshipTypeCodingCode { Ext, Fammemb };
|
|
|
|
public enum FollowUpPatientStatusCodingCode { LostToFu };
|
|
|
|
public enum OncoProcedureCodingCode { NuclearMedicine, RadioTherapy, Surgery };
|
|
|
|
public enum MtbTherapyIntentCodingCode { K, P, S, X };
|
|
|
|
public enum TherapyStatusCodingCode { Completed, NotDone, OnGoing, Stopped, Unknown };
|
|
|
|
public enum MtbTherapyStatusReasonCodingCode { BestSupportiveCare, ChronicRemission, Deterioration, LostToFu, MedicalReasons, NoIndication, Other, OtherTherapyChosen, PatientDeath, PatientRefusal, PatientWish, PaymentEnded, PaymentPending, PaymentRefused, Progression, RegularCompletion, RegularCompletionWithDosageReduction, RegularCompletionWithSubstanceChange, Toxicity };
|
|
|
|
public enum MtbSystemicTherapyCategoryCodingCode { A, I, N, O, S };
|
|
|
|
public enum MtbSystemicTherapyDosageDensityCodingCode { Over50, Under50 };
|
|
|
|
public enum MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode { Complete, Partial };
|
|
|
|
public enum TumorCellContentMethodCodingCode { Bioinformatic, Histologic };
|
|
|
|
public enum ProteinExpressionIcScoreCodingCode { Code0, Code1, Code2, Code3 };
|
|
|
|
public enum ProteinExpressionTcScoreCodingCode { Code0, Code1, Code2, Code3, Code4, Code5, Code6 };
|
|
|
|
public enum ProteinExpressionResultCodingCode { Exp, NotExp, Code1Plus, Code2Plus, Code3Plus, Unknown };
|
|
|
|
public enum ModelProjectConsentPurpose { CaseIdentification, Reidentification, Sequencing };
|
|
|
|
public enum ConsentProvision { Deny, Permit };
|
|
|
|
public enum MvhSubmissionType { Addition, Correction, Followup, Initial };
|
|
|
|
public enum Chromosome { Chr1, Chr10, Chr11, Chr12, Chr13, Chr14, Chr15, Chr16, Chr17, Chr18, Chr19, Chr2, Chr20, Chr21, Chr22, Chr3, Chr4, Chr5, Chr6, Chr7, Chr8, Chr9, ChrX, ChrY };
|
|
|
|
public enum ExternalIdSystem { CancerSangerAcUkCosmic, EnsemblOrg, NcbiNlmNihGovEntrez, NcbiNlmNihGovSnp };
|
|
|
|
public enum BaseVariantLocalizationCodingCode { CodingRegion, Intergenic, Intronic, RegulatoryRegion, SplicingRegion };
|
|
|
|
public enum CnvCodingCode { HighLevelGain, Loss, LowLevelGain };
|
|
|
|
public enum InterpretationCodingCode { High, Intermediate, Low };
|
|
|
|
public enum RnaFusionStrand { Empty, RnaFusionStrand };
|
|
|
|
public enum TranscriptIdSystem { EnsemblOrg, NcbiNlmNihGovRefseq };
|
|
|
|
public enum ClinVarCodingCode { Code1, Code2, Code3, Code4, Code5 };
|
|
|
|
public enum NgsReportCodingCode { Array, Exome, GenomeLongRead, GenomeShortRead, Karyotyping, Other, Panel, Single };
|
|
|
|
public enum Unit { Months, Years };
|
|
|
|
public enum GenderCodingCode { Female, Male, Other, Unknown };
|
|
|
|
public enum HealthInsuranceCodingCode { Bei, Bg, Gkv, Gpv, Pkv, Ppv, Sel, Skt, Soz, Unk };
|
|
|
|
public enum VitalStatusCodingCode { Alive, Deceased };
|
|
|
|
public enum EcogCodingCode { Code0, Code1, Code2, Code3, Code4, Code5 };
|
|
|
|
public enum MolecularDiagnosticReportCodingCode { Array, Exome, Fish, FusionPanel, GenePanel, GenomeLongRead, GenomeShortRead, Karyotyping, Other, Panel, Pcr, Single };
|
|
|
|
public enum ResponseMethodCodingCode { Rano, Recist };
|
|
|
|
public enum RecistCodingCode { Cr, Mr, Na, Pd, Pr, Sd };
|
|
|
|
public enum TumorSpecimenCollectionLocalizationCodingCode { CellfreeDna, LocalRecurrence, Metastasis, PrimaryTumor, RegionalLymphNodes, Unknown };
|
|
|
|
public enum TumorSpecimenCollectionMethodCodingCode { Biopsy, Cytology, LiquidBiopsy, Resection, Unknown };
|
|
|
|
public enum TumorSpecimenCodingCode { CryoFrozen, Ffpe, FreshTissue, LiquidBiopsy, Unknown };
|
|
|
|
public partial class Mtb
|
|
{
|
|
public static Mtb FromJson(string json) => JsonConvert.DeserializeObject<Mtb>(json, MV64e.MTB.Converter.Settings);
|
|
}
|
|
|
|
public static class Serialize
|
|
{
|
|
public static string ToJson(this Mtb self) => JsonConvert.SerializeObject(self, MV64e.MTB.Converter.Settings);
|
|
}
|
|
|
|
internal static class Converter
|
|
{
|
|
public static readonly JsonSerializerSettings Settings = new JsonSerializerSettings
|
|
{
|
|
MetadataPropertyHandling = MetadataPropertyHandling.Ignore,
|
|
DateParseHandling = DateParseHandling.None,
|
|
MissingMemberHandling = MissingMemberHandling.Error,
|
|
Converters =
|
|
{
|
|
GeneticCounselingRecommendationReasonCodingCodeConverter.Singleton,
|
|
MtbMedicationRecommendationCategoryCodingCodeConverter.Singleton,
|
|
LevelOfEvidenceAddendumCodingCodeConverter.Singleton,
|
|
LevelOfEvidenceGradingCodingCodeConverter.Singleton,
|
|
PublicationSystemConverter.Singleton,
|
|
RequestedMedicationSystemConverter.Singleton,
|
|
RecommendationPriorityCodingCodeConverter.Singleton,
|
|
MtbMedicationRecommendationUseTypeCodingCodeConverter.Singleton,
|
|
NoSequencingPerformedReasonCodeConverter.Singleton,
|
|
MtbProcedureRecommendationCategoryCodingCodeConverter.Singleton,
|
|
MtbCarePlanRecommendationsMissingReasonCodingCodeConverter.Singleton,
|
|
StudySystemConverter.Singleton,
|
|
ClaimResponseStatusCodingCodeConverter.Singleton,
|
|
ClaimResponseStatusReasonCodingCodeConverter.Singleton,
|
|
ClaimStageCodingCodeConverter.Singleton,
|
|
MtbDiagnosisGuidelineTreatmentStatusCodingCodeConverter.Singleton,
|
|
TumorStagingMethodCodingCodeConverter.Singleton,
|
|
ValueCodeConverter.Singleton,
|
|
FamilyMemberHistoryRelationshipTypeCodingCodeConverter.Singleton,
|
|
FollowUpPatientStatusCodingCodeConverter.Singleton,
|
|
OncoProcedureCodingCodeConverter.Singleton,
|
|
MtbTherapyIntentCodingCodeConverter.Singleton,
|
|
TherapyStatusCodingCodeConverter.Singleton,
|
|
MtbTherapyStatusReasonCodingCodeConverter.Singleton,
|
|
MtbSystemicTherapyCategoryCodingCodeConverter.Singleton,
|
|
MtbSystemicTherapyDosageDensityCodingCodeConverter.Singleton,
|
|
MtbSystemicTherapyRecommendationFulfillmentStatusCodingCodeConverter.Singleton,
|
|
TumorCellContentMethodCodingCodeConverter.Singleton,
|
|
ProteinExpressionIcScoreCodingCodeConverter.Singleton,
|
|
ProteinExpressionTcScoreCodingCodeConverter.Singleton,
|
|
ProteinExpressionResultCodingCodeConverter.Singleton,
|
|
ModelProjectConsentPurposeConverter.Singleton,
|
|
ConsentProvisionConverter.Singleton,
|
|
MvhSubmissionTypeConverter.Singleton,
|
|
ChromosomeConverter.Singleton,
|
|
ExternalIdSystemConverter.Singleton,
|
|
BaseVariantLocalizationCodingCodeConverter.Singleton,
|
|
CnvCodingCodeConverter.Singleton,
|
|
InterpretationCodingCodeConverter.Singleton,
|
|
RnaFusionStrandConverter.Singleton,
|
|
TranscriptIdSystemConverter.Singleton,
|
|
ClinVarCodingCodeConverter.Singleton,
|
|
NgsReportCodingCodeConverter.Singleton,
|
|
UnitConverter.Singleton,
|
|
GenderCodingCodeConverter.Singleton,
|
|
HealthInsuranceCodingCodeConverter.Singleton,
|
|
VitalStatusCodingCodeConverter.Singleton,
|
|
EcogCodingCodeConverter.Singleton,
|
|
MolecularDiagnosticReportCodingCodeConverter.Singleton,
|
|
ResponseMethodCodingCodeConverter.Singleton,
|
|
RecistCodingCodeConverter.Singleton,
|
|
TumorSpecimenCollectionLocalizationCodingCodeConverter.Singleton,
|
|
TumorSpecimenCollectionMethodCodingCodeConverter.Singleton,
|
|
TumorSpecimenCodingCodeConverter.Singleton,
|
|
new IsoDateTimeConverter { DateTimeStyles = DateTimeStyles.AssumeUniversal }
|
|
},
|
|
};
|
|
}
|
|
|
|
internal class GeneticCounselingRecommendationReasonCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(GeneticCounselingRecommendationReasonCodingCode) || t == typeof(GeneticCounselingRecommendationReasonCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "family-anamnesis":
|
|
return GeneticCounselingRecommendationReasonCodingCode.FamilyAnamnesis;
|
|
case "other":
|
|
return GeneticCounselingRecommendationReasonCodingCode.Other;
|
|
case "secondary-tumor":
|
|
return GeneticCounselingRecommendationReasonCodingCode.SecondaryTumor;
|
|
case "self-anamnesis":
|
|
return GeneticCounselingRecommendationReasonCodingCode.SelfAnamnesis;
|
|
case "unknown":
|
|
return GeneticCounselingRecommendationReasonCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type GeneticCounselingRecommendationReasonCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (GeneticCounselingRecommendationReasonCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case GeneticCounselingRecommendationReasonCodingCode.FamilyAnamnesis:
|
|
serializer.Serialize(writer, "family-anamnesis");
|
|
return;
|
|
case GeneticCounselingRecommendationReasonCodingCode.Other:
|
|
serializer.Serialize(writer, "other");
|
|
return;
|
|
case GeneticCounselingRecommendationReasonCodingCode.SecondaryTumor:
|
|
serializer.Serialize(writer, "secondary-tumor");
|
|
return;
|
|
case GeneticCounselingRecommendationReasonCodingCode.SelfAnamnesis:
|
|
serializer.Serialize(writer, "self-anamnesis");
|
|
return;
|
|
case GeneticCounselingRecommendationReasonCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type GeneticCounselingRecommendationReasonCodingCode");
|
|
}
|
|
|
|
public static readonly GeneticCounselingRecommendationReasonCodingCodeConverter Singleton = new GeneticCounselingRecommendationReasonCodingCodeConverter();
|
|
}
|
|
|
|
internal class MtbMedicationRecommendationCategoryCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MtbMedicationRecommendationCategoryCodingCode) || t == typeof(MtbMedicationRecommendationCategoryCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "CH":
|
|
return MtbMedicationRecommendationCategoryCodingCode.Ch;
|
|
case "HO":
|
|
return MtbMedicationRecommendationCategoryCodingCode.Ho;
|
|
case "IM":
|
|
return MtbMedicationRecommendationCategoryCodingCode.Im;
|
|
case "SO":
|
|
return MtbMedicationRecommendationCategoryCodingCode.So;
|
|
case "SZ":
|
|
return MtbMedicationRecommendationCategoryCodingCode.Sz;
|
|
case "ZS":
|
|
return MtbMedicationRecommendationCategoryCodingCode.Zs;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MtbMedicationRecommendationCategoryCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MtbMedicationRecommendationCategoryCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MtbMedicationRecommendationCategoryCodingCode.Ch:
|
|
serializer.Serialize(writer, "CH");
|
|
return;
|
|
case MtbMedicationRecommendationCategoryCodingCode.Ho:
|
|
serializer.Serialize(writer, "HO");
|
|
return;
|
|
case MtbMedicationRecommendationCategoryCodingCode.Im:
|
|
serializer.Serialize(writer, "IM");
|
|
return;
|
|
case MtbMedicationRecommendationCategoryCodingCode.So:
|
|
serializer.Serialize(writer, "SO");
|
|
return;
|
|
case MtbMedicationRecommendationCategoryCodingCode.Sz:
|
|
serializer.Serialize(writer, "SZ");
|
|
return;
|
|
case MtbMedicationRecommendationCategoryCodingCode.Zs:
|
|
serializer.Serialize(writer, "ZS");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MtbMedicationRecommendationCategoryCodingCode");
|
|
}
|
|
|
|
public static readonly MtbMedicationRecommendationCategoryCodingCodeConverter Singleton = new MtbMedicationRecommendationCategoryCodingCodeConverter();
|
|
}
|
|
|
|
internal class LevelOfEvidenceAddendumCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(LevelOfEvidenceAddendumCodingCode) || t == typeof(LevelOfEvidenceAddendumCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "R":
|
|
return LevelOfEvidenceAddendumCodingCode.R;
|
|
case "Z":
|
|
return LevelOfEvidenceAddendumCodingCode.Z;
|
|
case "is":
|
|
return LevelOfEvidenceAddendumCodingCode.Is;
|
|
case "iv":
|
|
return LevelOfEvidenceAddendumCodingCode.Iv;
|
|
}
|
|
throw new Exception("Cannot unmarshal type LevelOfEvidenceAddendumCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (LevelOfEvidenceAddendumCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case LevelOfEvidenceAddendumCodingCode.R:
|
|
serializer.Serialize(writer, "R");
|
|
return;
|
|
case LevelOfEvidenceAddendumCodingCode.Z:
|
|
serializer.Serialize(writer, "Z");
|
|
return;
|
|
case LevelOfEvidenceAddendumCodingCode.Is:
|
|
serializer.Serialize(writer, "is");
|
|
return;
|
|
case LevelOfEvidenceAddendumCodingCode.Iv:
|
|
serializer.Serialize(writer, "iv");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type LevelOfEvidenceAddendumCodingCode");
|
|
}
|
|
|
|
public static readonly LevelOfEvidenceAddendumCodingCodeConverter Singleton = new LevelOfEvidenceAddendumCodingCodeConverter();
|
|
}
|
|
|
|
internal class LevelOfEvidenceGradingCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(LevelOfEvidenceGradingCodingCode) || t == typeof(LevelOfEvidenceGradingCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "m1A":
|
|
return LevelOfEvidenceGradingCodingCode.M1A;
|
|
case "m1B":
|
|
return LevelOfEvidenceGradingCodingCode.M1B;
|
|
case "m1C":
|
|
return LevelOfEvidenceGradingCodingCode.M1C;
|
|
case "m2A":
|
|
return LevelOfEvidenceGradingCodingCode.M2A;
|
|
case "m2B":
|
|
return LevelOfEvidenceGradingCodingCode.M2B;
|
|
case "m2C":
|
|
return LevelOfEvidenceGradingCodingCode.M2C;
|
|
case "m3":
|
|
return LevelOfEvidenceGradingCodingCode.M3;
|
|
case "m4":
|
|
return LevelOfEvidenceGradingCodingCode.M4;
|
|
case "undefined":
|
|
return LevelOfEvidenceGradingCodingCode.Undefined;
|
|
}
|
|
throw new Exception("Cannot unmarshal type LevelOfEvidenceGradingCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (LevelOfEvidenceGradingCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case LevelOfEvidenceGradingCodingCode.M1A:
|
|
serializer.Serialize(writer, "m1A");
|
|
return;
|
|
case LevelOfEvidenceGradingCodingCode.M1B:
|
|
serializer.Serialize(writer, "m1B");
|
|
return;
|
|
case LevelOfEvidenceGradingCodingCode.M1C:
|
|
serializer.Serialize(writer, "m1C");
|
|
return;
|
|
case LevelOfEvidenceGradingCodingCode.M2A:
|
|
serializer.Serialize(writer, "m2A");
|
|
return;
|
|
case LevelOfEvidenceGradingCodingCode.M2B:
|
|
serializer.Serialize(writer, "m2B");
|
|
return;
|
|
case LevelOfEvidenceGradingCodingCode.M2C:
|
|
serializer.Serialize(writer, "m2C");
|
|
return;
|
|
case LevelOfEvidenceGradingCodingCode.M3:
|
|
serializer.Serialize(writer, "m3");
|
|
return;
|
|
case LevelOfEvidenceGradingCodingCode.M4:
|
|
serializer.Serialize(writer, "m4");
|
|
return;
|
|
case LevelOfEvidenceGradingCodingCode.Undefined:
|
|
serializer.Serialize(writer, "undefined");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type LevelOfEvidenceGradingCodingCode");
|
|
}
|
|
|
|
public static readonly LevelOfEvidenceGradingCodingCodeConverter Singleton = new LevelOfEvidenceGradingCodingCodeConverter();
|
|
}
|
|
|
|
internal class PublicationSystemConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(PublicationSystem) || t == typeof(PublicationSystem?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "https://pubmed.ncbi.nlm.nih.gov":
|
|
return PublicationSystem.PubmedNcbiNlmNihGov;
|
|
case "https://www.doi.org":
|
|
return PublicationSystem.DoiOrg;
|
|
}
|
|
throw new Exception("Cannot unmarshal type PublicationSystem");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (PublicationSystem)untypedValue;
|
|
switch (value)
|
|
{
|
|
case PublicationSystem.PubmedNcbiNlmNihGov:
|
|
serializer.Serialize(writer, "https://pubmed.ncbi.nlm.nih.gov");
|
|
return;
|
|
case PublicationSystem.DoiOrg:
|
|
serializer.Serialize(writer, "https://www.doi.org");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type PublicationSystem");
|
|
}
|
|
|
|
public static readonly PublicationSystemConverter Singleton = new PublicationSystemConverter();
|
|
}
|
|
|
|
internal class RequestedMedicationSystemConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(RequestedMedicationSystem) || t == typeof(RequestedMedicationSystem?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "http://fhir.de/CodeSystem/bfarm/atc":
|
|
return RequestedMedicationSystem.HttpFhirDeCodeSystemBfarmAtc;
|
|
case "undefined":
|
|
return RequestedMedicationSystem.Undefined;
|
|
}
|
|
throw new Exception("Cannot unmarshal type RequestedMedicationSystem");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (RequestedMedicationSystem)untypedValue;
|
|
switch (value)
|
|
{
|
|
case RequestedMedicationSystem.HttpFhirDeCodeSystemBfarmAtc:
|
|
serializer.Serialize(writer, "http://fhir.de/CodeSystem/bfarm/atc");
|
|
return;
|
|
case RequestedMedicationSystem.Undefined:
|
|
serializer.Serialize(writer, "undefined");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type RequestedMedicationSystem");
|
|
}
|
|
|
|
public static readonly RequestedMedicationSystemConverter Singleton = new RequestedMedicationSystemConverter();
|
|
}
|
|
|
|
internal class RecommendationPriorityCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(RecommendationPriorityCodingCode) || t == typeof(RecommendationPriorityCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "1":
|
|
return RecommendationPriorityCodingCode.Code1;
|
|
case "2":
|
|
return RecommendationPriorityCodingCode.Code2;
|
|
case "3":
|
|
return RecommendationPriorityCodingCode.Code3;
|
|
case "4":
|
|
return RecommendationPriorityCodingCode.Code4;
|
|
}
|
|
throw new Exception("Cannot unmarshal type RecommendationPriorityCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (RecommendationPriorityCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case RecommendationPriorityCodingCode.Code1:
|
|
serializer.Serialize(writer, "1");
|
|
return;
|
|
case RecommendationPriorityCodingCode.Code2:
|
|
serializer.Serialize(writer, "2");
|
|
return;
|
|
case RecommendationPriorityCodingCode.Code3:
|
|
serializer.Serialize(writer, "3");
|
|
return;
|
|
case RecommendationPriorityCodingCode.Code4:
|
|
serializer.Serialize(writer, "4");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type RecommendationPriorityCodingCode");
|
|
}
|
|
|
|
public static readonly RecommendationPriorityCodingCodeConverter Singleton = new RecommendationPriorityCodingCodeConverter();
|
|
}
|
|
|
|
internal class MtbMedicationRecommendationUseTypeCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MtbMedicationRecommendationUseTypeCodingCode) || t == typeof(MtbMedicationRecommendationUseTypeCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "compassionate":
|
|
return MtbMedicationRecommendationUseTypeCodingCode.Compassionate;
|
|
case "in-label":
|
|
return MtbMedicationRecommendationUseTypeCodingCode.InLabel;
|
|
case "off-label":
|
|
return MtbMedicationRecommendationUseTypeCodingCode.OffLabel;
|
|
case "sec-preventive":
|
|
return MtbMedicationRecommendationUseTypeCodingCode.SecPreventive;
|
|
case "unknown":
|
|
return MtbMedicationRecommendationUseTypeCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MtbMedicationRecommendationUseTypeCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MtbMedicationRecommendationUseTypeCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MtbMedicationRecommendationUseTypeCodingCode.Compassionate:
|
|
serializer.Serialize(writer, "compassionate");
|
|
return;
|
|
case MtbMedicationRecommendationUseTypeCodingCode.InLabel:
|
|
serializer.Serialize(writer, "in-label");
|
|
return;
|
|
case MtbMedicationRecommendationUseTypeCodingCode.OffLabel:
|
|
serializer.Serialize(writer, "off-label");
|
|
return;
|
|
case MtbMedicationRecommendationUseTypeCodingCode.SecPreventive:
|
|
serializer.Serialize(writer, "sec-preventive");
|
|
return;
|
|
case MtbMedicationRecommendationUseTypeCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MtbMedicationRecommendationUseTypeCodingCode");
|
|
}
|
|
|
|
public static readonly MtbMedicationRecommendationUseTypeCodingCodeConverter Singleton = new MtbMedicationRecommendationUseTypeCodingCodeConverter();
|
|
}
|
|
|
|
internal class NoSequencingPerformedReasonCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(NoSequencingPerformedReasonCode) || t == typeof(NoSequencingPerformedReasonCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "non-genetic-cause":
|
|
return NoSequencingPerformedReasonCode.NonGeneticCause;
|
|
case "not-rare-disease":
|
|
return NoSequencingPerformedReasonCode.NotRareDisease;
|
|
case "other":
|
|
return NoSequencingPerformedReasonCode.Other;
|
|
case "psychosomatic":
|
|
return NoSequencingPerformedReasonCode.Psychosomatic;
|
|
case "targeted-diagnostics-recommended":
|
|
return NoSequencingPerformedReasonCode.TargetedDiagnosticsRecommended;
|
|
}
|
|
throw new Exception("Cannot unmarshal type NoSequencingPerformedReasonCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (NoSequencingPerformedReasonCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case NoSequencingPerformedReasonCode.NonGeneticCause:
|
|
serializer.Serialize(writer, "non-genetic-cause");
|
|
return;
|
|
case NoSequencingPerformedReasonCode.NotRareDisease:
|
|
serializer.Serialize(writer, "not-rare-disease");
|
|
return;
|
|
case NoSequencingPerformedReasonCode.Other:
|
|
serializer.Serialize(writer, "other");
|
|
return;
|
|
case NoSequencingPerformedReasonCode.Psychosomatic:
|
|
serializer.Serialize(writer, "psychosomatic");
|
|
return;
|
|
case NoSequencingPerformedReasonCode.TargetedDiagnosticsRecommended:
|
|
serializer.Serialize(writer, "targeted-diagnostics-recommended");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type NoSequencingPerformedReasonCode");
|
|
}
|
|
|
|
public static readonly NoSequencingPerformedReasonCodeConverter Singleton = new NoSequencingPerformedReasonCodeConverter();
|
|
}
|
|
|
|
internal class MtbProcedureRecommendationCategoryCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MtbProcedureRecommendationCategoryCodingCode) || t == typeof(MtbProcedureRecommendationCategoryCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "AS":
|
|
return MtbProcedureRecommendationCategoryCodingCode.As;
|
|
case "OP":
|
|
return MtbProcedureRecommendationCategoryCodingCode.Op;
|
|
case "SO":
|
|
return MtbProcedureRecommendationCategoryCodingCode.So;
|
|
case "ST":
|
|
return MtbProcedureRecommendationCategoryCodingCode.St;
|
|
case "WS":
|
|
return MtbProcedureRecommendationCategoryCodingCode.Ws;
|
|
case "WW":
|
|
return MtbProcedureRecommendationCategoryCodingCode.Ww;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MtbProcedureRecommendationCategoryCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MtbProcedureRecommendationCategoryCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MtbProcedureRecommendationCategoryCodingCode.As:
|
|
serializer.Serialize(writer, "AS");
|
|
return;
|
|
case MtbProcedureRecommendationCategoryCodingCode.Op:
|
|
serializer.Serialize(writer, "OP");
|
|
return;
|
|
case MtbProcedureRecommendationCategoryCodingCode.So:
|
|
serializer.Serialize(writer, "SO");
|
|
return;
|
|
case MtbProcedureRecommendationCategoryCodingCode.St:
|
|
serializer.Serialize(writer, "ST");
|
|
return;
|
|
case MtbProcedureRecommendationCategoryCodingCode.Ws:
|
|
serializer.Serialize(writer, "WS");
|
|
return;
|
|
case MtbProcedureRecommendationCategoryCodingCode.Ww:
|
|
serializer.Serialize(writer, "WW");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MtbProcedureRecommendationCategoryCodingCode");
|
|
}
|
|
|
|
public static readonly MtbProcedureRecommendationCategoryCodingCodeConverter Singleton = new MtbProcedureRecommendationCategoryCodingCodeConverter();
|
|
}
|
|
|
|
internal class MtbCarePlanRecommendationsMissingReasonCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MtbCarePlanRecommendationsMissingReasonCodingCode) || t == typeof(MtbCarePlanRecommendationsMissingReasonCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
if (value == "no-target")
|
|
{
|
|
return MtbCarePlanRecommendationsMissingReasonCodingCode.NoTarget;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MtbCarePlanRecommendationsMissingReasonCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MtbCarePlanRecommendationsMissingReasonCodingCode)untypedValue;
|
|
if (value == MtbCarePlanRecommendationsMissingReasonCodingCode.NoTarget)
|
|
{
|
|
serializer.Serialize(writer, "no-target");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MtbCarePlanRecommendationsMissingReasonCodingCode");
|
|
}
|
|
|
|
public static readonly MtbCarePlanRecommendationsMissingReasonCodingCodeConverter Singleton = new MtbCarePlanRecommendationsMissingReasonCodingCodeConverter();
|
|
}
|
|
|
|
internal class StudySystemConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(StudySystem) || t == typeof(StudySystem?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "DRKS":
|
|
return StudySystem.Drks;
|
|
case "EUDAMED":
|
|
return StudySystem.Eudamed;
|
|
case "Eudra-CT":
|
|
return StudySystem.EudraCt;
|
|
case "NCT":
|
|
return StudySystem.Nct;
|
|
}
|
|
throw new Exception("Cannot unmarshal type StudySystem");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (StudySystem)untypedValue;
|
|
switch (value)
|
|
{
|
|
case StudySystem.Drks:
|
|
serializer.Serialize(writer, "DRKS");
|
|
return;
|
|
case StudySystem.Eudamed:
|
|
serializer.Serialize(writer, "EUDAMED");
|
|
return;
|
|
case StudySystem.EudraCt:
|
|
serializer.Serialize(writer, "Eudra-CT");
|
|
return;
|
|
case StudySystem.Nct:
|
|
serializer.Serialize(writer, "NCT");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type StudySystem");
|
|
}
|
|
|
|
public static readonly StudySystemConverter Singleton = new StudySystemConverter();
|
|
}
|
|
|
|
internal class ClaimResponseStatusCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ClaimResponseStatusCodingCode) || t == typeof(ClaimResponseStatusCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "accepted":
|
|
return ClaimResponseStatusCodingCode.Accepted;
|
|
case "rejected":
|
|
return ClaimResponseStatusCodingCode.Rejected;
|
|
case "unknown":
|
|
return ClaimResponseStatusCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ClaimResponseStatusCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ClaimResponseStatusCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ClaimResponseStatusCodingCode.Accepted:
|
|
serializer.Serialize(writer, "accepted");
|
|
return;
|
|
case ClaimResponseStatusCodingCode.Rejected:
|
|
serializer.Serialize(writer, "rejected");
|
|
return;
|
|
case ClaimResponseStatusCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ClaimResponseStatusCodingCode");
|
|
}
|
|
|
|
public static readonly ClaimResponseStatusCodingCodeConverter Singleton = new ClaimResponseStatusCodingCodeConverter();
|
|
}
|
|
|
|
internal class ClaimResponseStatusReasonCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ClaimResponseStatusReasonCodingCode) || t == typeof(ClaimResponseStatusReasonCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "approval-revocation":
|
|
return ClaimResponseStatusReasonCodingCode.ApprovalRevocation;
|
|
case "formal-reasons":
|
|
return ClaimResponseStatusReasonCodingCode.FormalReasons;
|
|
case "inclusion-in-study":
|
|
return ClaimResponseStatusReasonCodingCode.InclusionInStudy;
|
|
case "insufficient-evidence":
|
|
return ClaimResponseStatusReasonCodingCode.InsufficientEvidence;
|
|
case "other":
|
|
return ClaimResponseStatusReasonCodingCode.Other;
|
|
case "other-therapy-recommended":
|
|
return ClaimResponseStatusReasonCodingCode.OtherTherapyRecommended;
|
|
case "standard-therapy-not-exhausted":
|
|
return ClaimResponseStatusReasonCodingCode.StandardTherapyNotExhausted;
|
|
case "unknown":
|
|
return ClaimResponseStatusReasonCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ClaimResponseStatusReasonCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ClaimResponseStatusReasonCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ClaimResponseStatusReasonCodingCode.ApprovalRevocation:
|
|
serializer.Serialize(writer, "approval-revocation");
|
|
return;
|
|
case ClaimResponseStatusReasonCodingCode.FormalReasons:
|
|
serializer.Serialize(writer, "formal-reasons");
|
|
return;
|
|
case ClaimResponseStatusReasonCodingCode.InclusionInStudy:
|
|
serializer.Serialize(writer, "inclusion-in-study");
|
|
return;
|
|
case ClaimResponseStatusReasonCodingCode.InsufficientEvidence:
|
|
serializer.Serialize(writer, "insufficient-evidence");
|
|
return;
|
|
case ClaimResponseStatusReasonCodingCode.Other:
|
|
serializer.Serialize(writer, "other");
|
|
return;
|
|
case ClaimResponseStatusReasonCodingCode.OtherTherapyRecommended:
|
|
serializer.Serialize(writer, "other-therapy-recommended");
|
|
return;
|
|
case ClaimResponseStatusReasonCodingCode.StandardTherapyNotExhausted:
|
|
serializer.Serialize(writer, "standard-therapy-not-exhausted");
|
|
return;
|
|
case ClaimResponseStatusReasonCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ClaimResponseStatusReasonCodingCode");
|
|
}
|
|
|
|
public static readonly ClaimResponseStatusReasonCodingCodeConverter Singleton = new ClaimResponseStatusReasonCodingCodeConverter();
|
|
}
|
|
|
|
internal class ClaimStageCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ClaimStageCodingCode) || t == typeof(ClaimStageCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "follow-up-claim":
|
|
return ClaimStageCodingCode.FollowUpClaim;
|
|
case "initial-claim":
|
|
return ClaimStageCodingCode.InitialClaim;
|
|
case "revocation":
|
|
return ClaimStageCodingCode.Revocation;
|
|
case "unknown":
|
|
return ClaimStageCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ClaimStageCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ClaimStageCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ClaimStageCodingCode.FollowUpClaim:
|
|
serializer.Serialize(writer, "follow-up-claim");
|
|
return;
|
|
case ClaimStageCodingCode.InitialClaim:
|
|
serializer.Serialize(writer, "initial-claim");
|
|
return;
|
|
case ClaimStageCodingCode.Revocation:
|
|
serializer.Serialize(writer, "revocation");
|
|
return;
|
|
case ClaimStageCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ClaimStageCodingCode");
|
|
}
|
|
|
|
public static readonly ClaimStageCodingCodeConverter Singleton = new ClaimStageCodingCodeConverter();
|
|
}
|
|
|
|
internal class MtbDiagnosisGuidelineTreatmentStatusCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MtbDiagnosisGuidelineTreatmentStatusCodingCode) || t == typeof(MtbDiagnosisGuidelineTreatmentStatusCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "exhausted":
|
|
return MtbDiagnosisGuidelineTreatmentStatusCodingCode.Exhausted;
|
|
case "impossible":
|
|
return MtbDiagnosisGuidelineTreatmentStatusCodingCode.Impossible;
|
|
case "no-guidelines-available":
|
|
return MtbDiagnosisGuidelineTreatmentStatusCodingCode.NoGuidelinesAvailable;
|
|
case "non-exhausted":
|
|
return MtbDiagnosisGuidelineTreatmentStatusCodingCode.NonExhausted;
|
|
case "unknown":
|
|
return MtbDiagnosisGuidelineTreatmentStatusCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MtbDiagnosisGuidelineTreatmentStatusCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MtbDiagnosisGuidelineTreatmentStatusCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MtbDiagnosisGuidelineTreatmentStatusCodingCode.Exhausted:
|
|
serializer.Serialize(writer, "exhausted");
|
|
return;
|
|
case MtbDiagnosisGuidelineTreatmentStatusCodingCode.Impossible:
|
|
serializer.Serialize(writer, "impossible");
|
|
return;
|
|
case MtbDiagnosisGuidelineTreatmentStatusCodingCode.NoGuidelinesAvailable:
|
|
serializer.Serialize(writer, "no-guidelines-available");
|
|
return;
|
|
case MtbDiagnosisGuidelineTreatmentStatusCodingCode.NonExhausted:
|
|
serializer.Serialize(writer, "non-exhausted");
|
|
return;
|
|
case MtbDiagnosisGuidelineTreatmentStatusCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MtbDiagnosisGuidelineTreatmentStatusCodingCode");
|
|
}
|
|
|
|
public static readonly MtbDiagnosisGuidelineTreatmentStatusCodingCodeConverter Singleton = new MtbDiagnosisGuidelineTreatmentStatusCodingCodeConverter();
|
|
}
|
|
|
|
internal class TumorStagingMethodCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(TumorStagingMethodCodingCode) || t == typeof(TumorStagingMethodCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "clinical":
|
|
return TumorStagingMethodCodingCode.Clinical;
|
|
case "pathologic":
|
|
return TumorStagingMethodCodingCode.Pathologic;
|
|
}
|
|
throw new Exception("Cannot unmarshal type TumorStagingMethodCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (TumorStagingMethodCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case TumorStagingMethodCodingCode.Clinical:
|
|
serializer.Serialize(writer, "clinical");
|
|
return;
|
|
case TumorStagingMethodCodingCode.Pathologic:
|
|
serializer.Serialize(writer, "pathologic");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type TumorStagingMethodCodingCode");
|
|
}
|
|
|
|
public static readonly TumorStagingMethodCodingCodeConverter Singleton = new TumorStagingMethodCodingCodeConverter();
|
|
}
|
|
|
|
internal class ValueCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ValueCode) || t == typeof(ValueCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "main":
|
|
return ValueCode.Main;
|
|
case "metachronous":
|
|
return ValueCode.Metachronous;
|
|
case "secondary":
|
|
return ValueCode.Secondary;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ValueCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ValueCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ValueCode.Main:
|
|
serializer.Serialize(writer, "main");
|
|
return;
|
|
case ValueCode.Metachronous:
|
|
serializer.Serialize(writer, "metachronous");
|
|
return;
|
|
case ValueCode.Secondary:
|
|
serializer.Serialize(writer, "secondary");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ValueCode");
|
|
}
|
|
|
|
public static readonly ValueCodeConverter Singleton = new ValueCodeConverter();
|
|
}
|
|
|
|
internal class FamilyMemberHistoryRelationshipTypeCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(FamilyMemberHistoryRelationshipTypeCodingCode) || t == typeof(FamilyMemberHistoryRelationshipTypeCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "EXT":
|
|
return FamilyMemberHistoryRelationshipTypeCodingCode.Ext;
|
|
case "FAMMEMB":
|
|
return FamilyMemberHistoryRelationshipTypeCodingCode.Fammemb;
|
|
}
|
|
throw new Exception("Cannot unmarshal type FamilyMemberHistoryRelationshipTypeCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (FamilyMemberHistoryRelationshipTypeCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case FamilyMemberHistoryRelationshipTypeCodingCode.Ext:
|
|
serializer.Serialize(writer, "EXT");
|
|
return;
|
|
case FamilyMemberHistoryRelationshipTypeCodingCode.Fammemb:
|
|
serializer.Serialize(writer, "FAMMEMB");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type FamilyMemberHistoryRelationshipTypeCodingCode");
|
|
}
|
|
|
|
public static readonly FamilyMemberHistoryRelationshipTypeCodingCodeConverter Singleton = new FamilyMemberHistoryRelationshipTypeCodingCodeConverter();
|
|
}
|
|
|
|
internal class FollowUpPatientStatusCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(FollowUpPatientStatusCodingCode) || t == typeof(FollowUpPatientStatusCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
if (value == "lost-to-fu")
|
|
{
|
|
return FollowUpPatientStatusCodingCode.LostToFu;
|
|
}
|
|
throw new Exception("Cannot unmarshal type FollowUpPatientStatusCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (FollowUpPatientStatusCodingCode)untypedValue;
|
|
if (value == FollowUpPatientStatusCodingCode.LostToFu)
|
|
{
|
|
serializer.Serialize(writer, "lost-to-fu");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type FollowUpPatientStatusCodingCode");
|
|
}
|
|
|
|
public static readonly FollowUpPatientStatusCodingCodeConverter Singleton = new FollowUpPatientStatusCodingCodeConverter();
|
|
}
|
|
|
|
internal class OncoProcedureCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(OncoProcedureCodingCode) || t == typeof(OncoProcedureCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "nuclear-medicine":
|
|
return OncoProcedureCodingCode.NuclearMedicine;
|
|
case "radio-therapy":
|
|
return OncoProcedureCodingCode.RadioTherapy;
|
|
case "surgery":
|
|
return OncoProcedureCodingCode.Surgery;
|
|
}
|
|
throw new Exception("Cannot unmarshal type OncoProcedureCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (OncoProcedureCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case OncoProcedureCodingCode.NuclearMedicine:
|
|
serializer.Serialize(writer, "nuclear-medicine");
|
|
return;
|
|
case OncoProcedureCodingCode.RadioTherapy:
|
|
serializer.Serialize(writer, "radio-therapy");
|
|
return;
|
|
case OncoProcedureCodingCode.Surgery:
|
|
serializer.Serialize(writer, "surgery");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type OncoProcedureCodingCode");
|
|
}
|
|
|
|
public static readonly OncoProcedureCodingCodeConverter Singleton = new OncoProcedureCodingCodeConverter();
|
|
}
|
|
|
|
internal class MtbTherapyIntentCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MtbTherapyIntentCodingCode) || t == typeof(MtbTherapyIntentCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "K":
|
|
return MtbTherapyIntentCodingCode.K;
|
|
case "P":
|
|
return MtbTherapyIntentCodingCode.P;
|
|
case "S":
|
|
return MtbTherapyIntentCodingCode.S;
|
|
case "X":
|
|
return MtbTherapyIntentCodingCode.X;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MtbTherapyIntentCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MtbTherapyIntentCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MtbTherapyIntentCodingCode.K:
|
|
serializer.Serialize(writer, "K");
|
|
return;
|
|
case MtbTherapyIntentCodingCode.P:
|
|
serializer.Serialize(writer, "P");
|
|
return;
|
|
case MtbTherapyIntentCodingCode.S:
|
|
serializer.Serialize(writer, "S");
|
|
return;
|
|
case MtbTherapyIntentCodingCode.X:
|
|
serializer.Serialize(writer, "X");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MtbTherapyIntentCodingCode");
|
|
}
|
|
|
|
public static readonly MtbTherapyIntentCodingCodeConverter Singleton = new MtbTherapyIntentCodingCodeConverter();
|
|
}
|
|
|
|
internal class TherapyStatusCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(TherapyStatusCodingCode) || t == typeof(TherapyStatusCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "completed":
|
|
return TherapyStatusCodingCode.Completed;
|
|
case "not-done":
|
|
return TherapyStatusCodingCode.NotDone;
|
|
case "on-going":
|
|
return TherapyStatusCodingCode.OnGoing;
|
|
case "stopped":
|
|
return TherapyStatusCodingCode.Stopped;
|
|
case "unknown":
|
|
return TherapyStatusCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type TherapyStatusCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (TherapyStatusCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case TherapyStatusCodingCode.Completed:
|
|
serializer.Serialize(writer, "completed");
|
|
return;
|
|
case TherapyStatusCodingCode.NotDone:
|
|
serializer.Serialize(writer, "not-done");
|
|
return;
|
|
case TherapyStatusCodingCode.OnGoing:
|
|
serializer.Serialize(writer, "on-going");
|
|
return;
|
|
case TherapyStatusCodingCode.Stopped:
|
|
serializer.Serialize(writer, "stopped");
|
|
return;
|
|
case TherapyStatusCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type TherapyStatusCodingCode");
|
|
}
|
|
|
|
public static readonly TherapyStatusCodingCodeConverter Singleton = new TherapyStatusCodingCodeConverter();
|
|
}
|
|
|
|
internal class MtbTherapyStatusReasonCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MtbTherapyStatusReasonCodingCode) || t == typeof(MtbTherapyStatusReasonCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "best-supportive-care":
|
|
return MtbTherapyStatusReasonCodingCode.BestSupportiveCare;
|
|
case "chronic-remission":
|
|
return MtbTherapyStatusReasonCodingCode.ChronicRemission;
|
|
case "deterioration":
|
|
return MtbTherapyStatusReasonCodingCode.Deterioration;
|
|
case "lost-to-fu":
|
|
return MtbTherapyStatusReasonCodingCode.LostToFu;
|
|
case "medical-reasons":
|
|
return MtbTherapyStatusReasonCodingCode.MedicalReasons;
|
|
case "no-indication":
|
|
return MtbTherapyStatusReasonCodingCode.NoIndication;
|
|
case "other":
|
|
return MtbTherapyStatusReasonCodingCode.Other;
|
|
case "other-therapy-chosen":
|
|
return MtbTherapyStatusReasonCodingCode.OtherTherapyChosen;
|
|
case "patient-death":
|
|
return MtbTherapyStatusReasonCodingCode.PatientDeath;
|
|
case "patient-refusal":
|
|
return MtbTherapyStatusReasonCodingCode.PatientRefusal;
|
|
case "patient-wish":
|
|
return MtbTherapyStatusReasonCodingCode.PatientWish;
|
|
case "payment-ended":
|
|
return MtbTherapyStatusReasonCodingCode.PaymentEnded;
|
|
case "payment-pending":
|
|
return MtbTherapyStatusReasonCodingCode.PaymentPending;
|
|
case "payment-refused":
|
|
return MtbTherapyStatusReasonCodingCode.PaymentRefused;
|
|
case "progression":
|
|
return MtbTherapyStatusReasonCodingCode.Progression;
|
|
case "regular-completion":
|
|
return MtbTherapyStatusReasonCodingCode.RegularCompletion;
|
|
case "regular-completion-with-dosage-reduction":
|
|
return MtbTherapyStatusReasonCodingCode.RegularCompletionWithDosageReduction;
|
|
case "regular-completion-with-substance-change":
|
|
return MtbTherapyStatusReasonCodingCode.RegularCompletionWithSubstanceChange;
|
|
case "toxicity":
|
|
return MtbTherapyStatusReasonCodingCode.Toxicity;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MtbTherapyStatusReasonCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MtbTherapyStatusReasonCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MtbTherapyStatusReasonCodingCode.BestSupportiveCare:
|
|
serializer.Serialize(writer, "best-supportive-care");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.ChronicRemission:
|
|
serializer.Serialize(writer, "chronic-remission");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.Deterioration:
|
|
serializer.Serialize(writer, "deterioration");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.LostToFu:
|
|
serializer.Serialize(writer, "lost-to-fu");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.MedicalReasons:
|
|
serializer.Serialize(writer, "medical-reasons");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.NoIndication:
|
|
serializer.Serialize(writer, "no-indication");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.Other:
|
|
serializer.Serialize(writer, "other");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.OtherTherapyChosen:
|
|
serializer.Serialize(writer, "other-therapy-chosen");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.PatientDeath:
|
|
serializer.Serialize(writer, "patient-death");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.PatientRefusal:
|
|
serializer.Serialize(writer, "patient-refusal");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.PatientWish:
|
|
serializer.Serialize(writer, "patient-wish");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.PaymentEnded:
|
|
serializer.Serialize(writer, "payment-ended");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.PaymentPending:
|
|
serializer.Serialize(writer, "payment-pending");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.PaymentRefused:
|
|
serializer.Serialize(writer, "payment-refused");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.Progression:
|
|
serializer.Serialize(writer, "progression");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.RegularCompletion:
|
|
serializer.Serialize(writer, "regular-completion");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.RegularCompletionWithDosageReduction:
|
|
serializer.Serialize(writer, "regular-completion-with-dosage-reduction");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.RegularCompletionWithSubstanceChange:
|
|
serializer.Serialize(writer, "regular-completion-with-substance-change");
|
|
return;
|
|
case MtbTherapyStatusReasonCodingCode.Toxicity:
|
|
serializer.Serialize(writer, "toxicity");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MtbTherapyStatusReasonCodingCode");
|
|
}
|
|
|
|
public static readonly MtbTherapyStatusReasonCodingCodeConverter Singleton = new MtbTherapyStatusReasonCodingCodeConverter();
|
|
}
|
|
|
|
internal class MtbSystemicTherapyCategoryCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MtbSystemicTherapyCategoryCodingCode) || t == typeof(MtbSystemicTherapyCategoryCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "A":
|
|
return MtbSystemicTherapyCategoryCodingCode.A;
|
|
case "I":
|
|
return MtbSystemicTherapyCategoryCodingCode.I;
|
|
case "N":
|
|
return MtbSystemicTherapyCategoryCodingCode.N;
|
|
case "O":
|
|
return MtbSystemicTherapyCategoryCodingCode.O;
|
|
case "S":
|
|
return MtbSystemicTherapyCategoryCodingCode.S;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MtbSystemicTherapyCategoryCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MtbSystemicTherapyCategoryCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MtbSystemicTherapyCategoryCodingCode.A:
|
|
serializer.Serialize(writer, "A");
|
|
return;
|
|
case MtbSystemicTherapyCategoryCodingCode.I:
|
|
serializer.Serialize(writer, "I");
|
|
return;
|
|
case MtbSystemicTherapyCategoryCodingCode.N:
|
|
serializer.Serialize(writer, "N");
|
|
return;
|
|
case MtbSystemicTherapyCategoryCodingCode.O:
|
|
serializer.Serialize(writer, "O");
|
|
return;
|
|
case MtbSystemicTherapyCategoryCodingCode.S:
|
|
serializer.Serialize(writer, "S");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MtbSystemicTherapyCategoryCodingCode");
|
|
}
|
|
|
|
public static readonly MtbSystemicTherapyCategoryCodingCodeConverter Singleton = new MtbSystemicTherapyCategoryCodingCodeConverter();
|
|
}
|
|
|
|
internal class MtbSystemicTherapyDosageDensityCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MtbSystemicTherapyDosageDensityCodingCode) || t == typeof(MtbSystemicTherapyDosageDensityCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "over-50%":
|
|
return MtbSystemicTherapyDosageDensityCodingCode.Over50;
|
|
case "under-50%":
|
|
return MtbSystemicTherapyDosageDensityCodingCode.Under50;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MtbSystemicTherapyDosageDensityCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MtbSystemicTherapyDosageDensityCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MtbSystemicTherapyDosageDensityCodingCode.Over50:
|
|
serializer.Serialize(writer, "over-50%");
|
|
return;
|
|
case MtbSystemicTherapyDosageDensityCodingCode.Under50:
|
|
serializer.Serialize(writer, "under-50%");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MtbSystemicTherapyDosageDensityCodingCode");
|
|
}
|
|
|
|
public static readonly MtbSystemicTherapyDosageDensityCodingCodeConverter Singleton = new MtbSystemicTherapyDosageDensityCodingCodeConverter();
|
|
}
|
|
|
|
internal class MtbSystemicTherapyRecommendationFulfillmentStatusCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode) || t == typeof(MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "complete":
|
|
return MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode.Complete;
|
|
case "partial":
|
|
return MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode.Partial;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode.Complete:
|
|
serializer.Serialize(writer, "complete");
|
|
return;
|
|
case MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode.Partial:
|
|
serializer.Serialize(writer, "partial");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode");
|
|
}
|
|
|
|
public static readonly MtbSystemicTherapyRecommendationFulfillmentStatusCodingCodeConverter Singleton = new MtbSystemicTherapyRecommendationFulfillmentStatusCodingCodeConverter();
|
|
}
|
|
|
|
internal class TumorCellContentMethodCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(TumorCellContentMethodCodingCode) || t == typeof(TumorCellContentMethodCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "bioinformatic":
|
|
return TumorCellContentMethodCodingCode.Bioinformatic;
|
|
case "histologic":
|
|
return TumorCellContentMethodCodingCode.Histologic;
|
|
}
|
|
throw new Exception("Cannot unmarshal type TumorCellContentMethodCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (TumorCellContentMethodCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case TumorCellContentMethodCodingCode.Bioinformatic:
|
|
serializer.Serialize(writer, "bioinformatic");
|
|
return;
|
|
case TumorCellContentMethodCodingCode.Histologic:
|
|
serializer.Serialize(writer, "histologic");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type TumorCellContentMethodCodingCode");
|
|
}
|
|
|
|
public static readonly TumorCellContentMethodCodingCodeConverter Singleton = new TumorCellContentMethodCodingCodeConverter();
|
|
}
|
|
|
|
internal class ProteinExpressionIcScoreCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ProteinExpressionIcScoreCodingCode) || t == typeof(ProteinExpressionIcScoreCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "0":
|
|
return ProteinExpressionIcScoreCodingCode.Code0;
|
|
case "1":
|
|
return ProteinExpressionIcScoreCodingCode.Code1;
|
|
case "2":
|
|
return ProteinExpressionIcScoreCodingCode.Code2;
|
|
case "3":
|
|
return ProteinExpressionIcScoreCodingCode.Code3;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ProteinExpressionIcScoreCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ProteinExpressionIcScoreCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ProteinExpressionIcScoreCodingCode.Code0:
|
|
serializer.Serialize(writer, "0");
|
|
return;
|
|
case ProteinExpressionIcScoreCodingCode.Code1:
|
|
serializer.Serialize(writer, "1");
|
|
return;
|
|
case ProteinExpressionIcScoreCodingCode.Code2:
|
|
serializer.Serialize(writer, "2");
|
|
return;
|
|
case ProteinExpressionIcScoreCodingCode.Code3:
|
|
serializer.Serialize(writer, "3");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ProteinExpressionIcScoreCodingCode");
|
|
}
|
|
|
|
public static readonly ProteinExpressionIcScoreCodingCodeConverter Singleton = new ProteinExpressionIcScoreCodingCodeConverter();
|
|
}
|
|
|
|
internal class ProteinExpressionTcScoreCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ProteinExpressionTcScoreCodingCode) || t == typeof(ProteinExpressionTcScoreCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "0":
|
|
return ProteinExpressionTcScoreCodingCode.Code0;
|
|
case "1":
|
|
return ProteinExpressionTcScoreCodingCode.Code1;
|
|
case "2":
|
|
return ProteinExpressionTcScoreCodingCode.Code2;
|
|
case "3":
|
|
return ProteinExpressionTcScoreCodingCode.Code3;
|
|
case "4":
|
|
return ProteinExpressionTcScoreCodingCode.Code4;
|
|
case "5":
|
|
return ProteinExpressionTcScoreCodingCode.Code5;
|
|
case "6":
|
|
return ProteinExpressionTcScoreCodingCode.Code6;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ProteinExpressionTcScoreCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ProteinExpressionTcScoreCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ProteinExpressionTcScoreCodingCode.Code0:
|
|
serializer.Serialize(writer, "0");
|
|
return;
|
|
case ProteinExpressionTcScoreCodingCode.Code1:
|
|
serializer.Serialize(writer, "1");
|
|
return;
|
|
case ProteinExpressionTcScoreCodingCode.Code2:
|
|
serializer.Serialize(writer, "2");
|
|
return;
|
|
case ProteinExpressionTcScoreCodingCode.Code3:
|
|
serializer.Serialize(writer, "3");
|
|
return;
|
|
case ProteinExpressionTcScoreCodingCode.Code4:
|
|
serializer.Serialize(writer, "4");
|
|
return;
|
|
case ProteinExpressionTcScoreCodingCode.Code5:
|
|
serializer.Serialize(writer, "5");
|
|
return;
|
|
case ProteinExpressionTcScoreCodingCode.Code6:
|
|
serializer.Serialize(writer, "6");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ProteinExpressionTcScoreCodingCode");
|
|
}
|
|
|
|
public static readonly ProteinExpressionTcScoreCodingCodeConverter Singleton = new ProteinExpressionTcScoreCodingCodeConverter();
|
|
}
|
|
|
|
internal class ProteinExpressionResultCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ProteinExpressionResultCodingCode) || t == typeof(ProteinExpressionResultCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "1+":
|
|
return ProteinExpressionResultCodingCode.Code1Plus;
|
|
case "2+":
|
|
return ProteinExpressionResultCodingCode.Code2Plus;
|
|
case "3+":
|
|
return ProteinExpressionResultCodingCode.Code3Plus;
|
|
case "exp":
|
|
return ProteinExpressionResultCodingCode.Exp;
|
|
case "not-exp":
|
|
return ProteinExpressionResultCodingCode.NotExp;
|
|
case "unknown":
|
|
return ProteinExpressionResultCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ProteinExpressionResultCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ProteinExpressionResultCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ProteinExpressionResultCodingCode.Code1Plus:
|
|
serializer.Serialize(writer, "1+");
|
|
return;
|
|
case ProteinExpressionResultCodingCode.Code2Plus:
|
|
serializer.Serialize(writer, "2+");
|
|
return;
|
|
case ProteinExpressionResultCodingCode.Code3Plus:
|
|
serializer.Serialize(writer, "3+");
|
|
return;
|
|
case ProteinExpressionResultCodingCode.Exp:
|
|
serializer.Serialize(writer, "exp");
|
|
return;
|
|
case ProteinExpressionResultCodingCode.NotExp:
|
|
serializer.Serialize(writer, "not-exp");
|
|
return;
|
|
case ProteinExpressionResultCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ProteinExpressionResultCodingCode");
|
|
}
|
|
|
|
public static readonly ProteinExpressionResultCodingCodeConverter Singleton = new ProteinExpressionResultCodingCodeConverter();
|
|
}
|
|
|
|
internal class ModelProjectConsentPurposeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ModelProjectConsentPurpose) || t == typeof(ModelProjectConsentPurpose?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "case-identification":
|
|
return ModelProjectConsentPurpose.CaseIdentification;
|
|
case "reidentification":
|
|
return ModelProjectConsentPurpose.Reidentification;
|
|
case "sequencing":
|
|
return ModelProjectConsentPurpose.Sequencing;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ModelProjectConsentPurpose");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ModelProjectConsentPurpose)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ModelProjectConsentPurpose.CaseIdentification:
|
|
serializer.Serialize(writer, "case-identification");
|
|
return;
|
|
case ModelProjectConsentPurpose.Reidentification:
|
|
serializer.Serialize(writer, "reidentification");
|
|
return;
|
|
case ModelProjectConsentPurpose.Sequencing:
|
|
serializer.Serialize(writer, "sequencing");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ModelProjectConsentPurpose");
|
|
}
|
|
|
|
public static readonly ModelProjectConsentPurposeConverter Singleton = new ModelProjectConsentPurposeConverter();
|
|
}
|
|
|
|
internal class ConsentProvisionConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ConsentProvision) || t == typeof(ConsentProvision?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "deny":
|
|
return ConsentProvision.Deny;
|
|
case "permit":
|
|
return ConsentProvision.Permit;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ConsentProvision");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ConsentProvision)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ConsentProvision.Deny:
|
|
serializer.Serialize(writer, "deny");
|
|
return;
|
|
case ConsentProvision.Permit:
|
|
serializer.Serialize(writer, "permit");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ConsentProvision");
|
|
}
|
|
|
|
public static readonly ConsentProvisionConverter Singleton = new ConsentProvisionConverter();
|
|
}
|
|
|
|
internal class MvhSubmissionTypeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MvhSubmissionType) || t == typeof(MvhSubmissionType?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "addition":
|
|
return MvhSubmissionType.Addition;
|
|
case "correction":
|
|
return MvhSubmissionType.Correction;
|
|
case "followup":
|
|
return MvhSubmissionType.Followup;
|
|
case "initial":
|
|
return MvhSubmissionType.Initial;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MvhSubmissionType");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MvhSubmissionType)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MvhSubmissionType.Addition:
|
|
serializer.Serialize(writer, "addition");
|
|
return;
|
|
case MvhSubmissionType.Correction:
|
|
serializer.Serialize(writer, "correction");
|
|
return;
|
|
case MvhSubmissionType.Followup:
|
|
serializer.Serialize(writer, "followup");
|
|
return;
|
|
case MvhSubmissionType.Initial:
|
|
serializer.Serialize(writer, "initial");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MvhSubmissionType");
|
|
}
|
|
|
|
public static readonly MvhSubmissionTypeConverter Singleton = new MvhSubmissionTypeConverter();
|
|
}
|
|
|
|
internal class ChromosomeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(Chromosome) || t == typeof(Chromosome?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "chr1":
|
|
return Chromosome.Chr1;
|
|
case "chr10":
|
|
return Chromosome.Chr10;
|
|
case "chr11":
|
|
return Chromosome.Chr11;
|
|
case "chr12":
|
|
return Chromosome.Chr12;
|
|
case "chr13":
|
|
return Chromosome.Chr13;
|
|
case "chr14":
|
|
return Chromosome.Chr14;
|
|
case "chr15":
|
|
return Chromosome.Chr15;
|
|
case "chr16":
|
|
return Chromosome.Chr16;
|
|
case "chr17":
|
|
return Chromosome.Chr17;
|
|
case "chr18":
|
|
return Chromosome.Chr18;
|
|
case "chr19":
|
|
return Chromosome.Chr19;
|
|
case "chr2":
|
|
return Chromosome.Chr2;
|
|
case "chr20":
|
|
return Chromosome.Chr20;
|
|
case "chr21":
|
|
return Chromosome.Chr21;
|
|
case "chr22":
|
|
return Chromosome.Chr22;
|
|
case "chr3":
|
|
return Chromosome.Chr3;
|
|
case "chr4":
|
|
return Chromosome.Chr4;
|
|
case "chr5":
|
|
return Chromosome.Chr5;
|
|
case "chr6":
|
|
return Chromosome.Chr6;
|
|
case "chr7":
|
|
return Chromosome.Chr7;
|
|
case "chr8":
|
|
return Chromosome.Chr8;
|
|
case "chr9":
|
|
return Chromosome.Chr9;
|
|
case "chrX":
|
|
return Chromosome.ChrX;
|
|
case "chrY":
|
|
return Chromosome.ChrY;
|
|
}
|
|
throw new Exception("Cannot unmarshal type Chromosome");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (Chromosome)untypedValue;
|
|
switch (value)
|
|
{
|
|
case Chromosome.Chr1:
|
|
serializer.Serialize(writer, "chr1");
|
|
return;
|
|
case Chromosome.Chr10:
|
|
serializer.Serialize(writer, "chr10");
|
|
return;
|
|
case Chromosome.Chr11:
|
|
serializer.Serialize(writer, "chr11");
|
|
return;
|
|
case Chromosome.Chr12:
|
|
serializer.Serialize(writer, "chr12");
|
|
return;
|
|
case Chromosome.Chr13:
|
|
serializer.Serialize(writer, "chr13");
|
|
return;
|
|
case Chromosome.Chr14:
|
|
serializer.Serialize(writer, "chr14");
|
|
return;
|
|
case Chromosome.Chr15:
|
|
serializer.Serialize(writer, "chr15");
|
|
return;
|
|
case Chromosome.Chr16:
|
|
serializer.Serialize(writer, "chr16");
|
|
return;
|
|
case Chromosome.Chr17:
|
|
serializer.Serialize(writer, "chr17");
|
|
return;
|
|
case Chromosome.Chr18:
|
|
serializer.Serialize(writer, "chr18");
|
|
return;
|
|
case Chromosome.Chr19:
|
|
serializer.Serialize(writer, "chr19");
|
|
return;
|
|
case Chromosome.Chr2:
|
|
serializer.Serialize(writer, "chr2");
|
|
return;
|
|
case Chromosome.Chr20:
|
|
serializer.Serialize(writer, "chr20");
|
|
return;
|
|
case Chromosome.Chr21:
|
|
serializer.Serialize(writer, "chr21");
|
|
return;
|
|
case Chromosome.Chr22:
|
|
serializer.Serialize(writer, "chr22");
|
|
return;
|
|
case Chromosome.Chr3:
|
|
serializer.Serialize(writer, "chr3");
|
|
return;
|
|
case Chromosome.Chr4:
|
|
serializer.Serialize(writer, "chr4");
|
|
return;
|
|
case Chromosome.Chr5:
|
|
serializer.Serialize(writer, "chr5");
|
|
return;
|
|
case Chromosome.Chr6:
|
|
serializer.Serialize(writer, "chr6");
|
|
return;
|
|
case Chromosome.Chr7:
|
|
serializer.Serialize(writer, "chr7");
|
|
return;
|
|
case Chromosome.Chr8:
|
|
serializer.Serialize(writer, "chr8");
|
|
return;
|
|
case Chromosome.Chr9:
|
|
serializer.Serialize(writer, "chr9");
|
|
return;
|
|
case Chromosome.ChrX:
|
|
serializer.Serialize(writer, "chrX");
|
|
return;
|
|
case Chromosome.ChrY:
|
|
serializer.Serialize(writer, "chrY");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type Chromosome");
|
|
}
|
|
|
|
public static readonly ChromosomeConverter Singleton = new ChromosomeConverter();
|
|
}
|
|
|
|
internal class ExternalIdSystemConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ExternalIdSystem) || t == typeof(ExternalIdSystem?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "https://cancer.sanger.ac.uk/cosmic":
|
|
return ExternalIdSystem.CancerSangerAcUkCosmic;
|
|
case "https://www.ensembl.org":
|
|
return ExternalIdSystem.EnsemblOrg;
|
|
case "https://www.ncbi.nlm.nih.gov/entrez":
|
|
return ExternalIdSystem.NcbiNlmNihGovEntrez;
|
|
case "https://www.ncbi.nlm.nih.gov/snp":
|
|
return ExternalIdSystem.NcbiNlmNihGovSnp;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ExternalIdSystem");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ExternalIdSystem)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ExternalIdSystem.CancerSangerAcUkCosmic:
|
|
serializer.Serialize(writer, "https://cancer.sanger.ac.uk/cosmic");
|
|
return;
|
|
case ExternalIdSystem.EnsemblOrg:
|
|
serializer.Serialize(writer, "https://www.ensembl.org");
|
|
return;
|
|
case ExternalIdSystem.NcbiNlmNihGovEntrez:
|
|
serializer.Serialize(writer, "https://www.ncbi.nlm.nih.gov/entrez");
|
|
return;
|
|
case ExternalIdSystem.NcbiNlmNihGovSnp:
|
|
serializer.Serialize(writer, "https://www.ncbi.nlm.nih.gov/snp");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ExternalIdSystem");
|
|
}
|
|
|
|
public static readonly ExternalIdSystemConverter Singleton = new ExternalIdSystemConverter();
|
|
}
|
|
|
|
internal class BaseVariantLocalizationCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(BaseVariantLocalizationCodingCode) || t == typeof(BaseVariantLocalizationCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "coding-region":
|
|
return BaseVariantLocalizationCodingCode.CodingRegion;
|
|
case "intergenic":
|
|
return BaseVariantLocalizationCodingCode.Intergenic;
|
|
case "intronic":
|
|
return BaseVariantLocalizationCodingCode.Intronic;
|
|
case "regulatory-region":
|
|
return BaseVariantLocalizationCodingCode.RegulatoryRegion;
|
|
case "splicing-region":
|
|
return BaseVariantLocalizationCodingCode.SplicingRegion;
|
|
}
|
|
throw new Exception("Cannot unmarshal type BaseVariantLocalizationCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (BaseVariantLocalizationCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case BaseVariantLocalizationCodingCode.CodingRegion:
|
|
serializer.Serialize(writer, "coding-region");
|
|
return;
|
|
case BaseVariantLocalizationCodingCode.Intergenic:
|
|
serializer.Serialize(writer, "intergenic");
|
|
return;
|
|
case BaseVariantLocalizationCodingCode.Intronic:
|
|
serializer.Serialize(writer, "intronic");
|
|
return;
|
|
case BaseVariantLocalizationCodingCode.RegulatoryRegion:
|
|
serializer.Serialize(writer, "regulatory-region");
|
|
return;
|
|
case BaseVariantLocalizationCodingCode.SplicingRegion:
|
|
serializer.Serialize(writer, "splicing-region");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type BaseVariantLocalizationCodingCode");
|
|
}
|
|
|
|
public static readonly BaseVariantLocalizationCodingCodeConverter Singleton = new BaseVariantLocalizationCodingCodeConverter();
|
|
}
|
|
|
|
internal class CnvCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(CnvCodingCode) || t == typeof(CnvCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "high-level-gain":
|
|
return CnvCodingCode.HighLevelGain;
|
|
case "loss":
|
|
return CnvCodingCode.Loss;
|
|
case "low-level-gain":
|
|
return CnvCodingCode.LowLevelGain;
|
|
}
|
|
throw new Exception("Cannot unmarshal type CnvCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (CnvCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case CnvCodingCode.HighLevelGain:
|
|
serializer.Serialize(writer, "high-level-gain");
|
|
return;
|
|
case CnvCodingCode.Loss:
|
|
serializer.Serialize(writer, "loss");
|
|
return;
|
|
case CnvCodingCode.LowLevelGain:
|
|
serializer.Serialize(writer, "low-level-gain");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type CnvCodingCode");
|
|
}
|
|
|
|
public static readonly CnvCodingCodeConverter Singleton = new CnvCodingCodeConverter();
|
|
}
|
|
|
|
internal class InterpretationCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(InterpretationCodingCode) || t == typeof(InterpretationCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "high":
|
|
return InterpretationCodingCode.High;
|
|
case "intermediate":
|
|
return InterpretationCodingCode.Intermediate;
|
|
case "low":
|
|
return InterpretationCodingCode.Low;
|
|
}
|
|
throw new Exception("Cannot unmarshal type InterpretationCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (InterpretationCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case InterpretationCodingCode.High:
|
|
serializer.Serialize(writer, "high");
|
|
return;
|
|
case InterpretationCodingCode.Intermediate:
|
|
serializer.Serialize(writer, "intermediate");
|
|
return;
|
|
case InterpretationCodingCode.Low:
|
|
serializer.Serialize(writer, "low");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type InterpretationCodingCode");
|
|
}
|
|
|
|
public static readonly InterpretationCodingCodeConverter Singleton = new InterpretationCodingCodeConverter();
|
|
}
|
|
|
|
internal class RnaFusionStrandConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(RnaFusionStrand) || t == typeof(RnaFusionStrand?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "+":
|
|
return RnaFusionStrand.Empty;
|
|
case "-":
|
|
return RnaFusionStrand.RnaFusionStrand;
|
|
}
|
|
throw new Exception("Cannot unmarshal type RnaFusionStrand");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (RnaFusionStrand)untypedValue;
|
|
switch (value)
|
|
{
|
|
case RnaFusionStrand.Empty:
|
|
serializer.Serialize(writer, "+");
|
|
return;
|
|
case RnaFusionStrand.RnaFusionStrand:
|
|
serializer.Serialize(writer, "-");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type RnaFusionStrand");
|
|
}
|
|
|
|
public static readonly RnaFusionStrandConverter Singleton = new RnaFusionStrandConverter();
|
|
}
|
|
|
|
internal class TranscriptIdSystemConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(TranscriptIdSystem) || t == typeof(TranscriptIdSystem?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "https://www.ensembl.org":
|
|
return TranscriptIdSystem.EnsemblOrg;
|
|
case "https://www.ncbi.nlm.nih.gov/refseq":
|
|
return TranscriptIdSystem.NcbiNlmNihGovRefseq;
|
|
}
|
|
throw new Exception("Cannot unmarshal type TranscriptIdSystem");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (TranscriptIdSystem)untypedValue;
|
|
switch (value)
|
|
{
|
|
case TranscriptIdSystem.EnsemblOrg:
|
|
serializer.Serialize(writer, "https://www.ensembl.org");
|
|
return;
|
|
case TranscriptIdSystem.NcbiNlmNihGovRefseq:
|
|
serializer.Serialize(writer, "https://www.ncbi.nlm.nih.gov/refseq");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type TranscriptIdSystem");
|
|
}
|
|
|
|
public static readonly TranscriptIdSystemConverter Singleton = new TranscriptIdSystemConverter();
|
|
}
|
|
|
|
internal class ClinVarCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ClinVarCodingCode) || t == typeof(ClinVarCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "1":
|
|
return ClinVarCodingCode.Code1;
|
|
case "2":
|
|
return ClinVarCodingCode.Code2;
|
|
case "3":
|
|
return ClinVarCodingCode.Code3;
|
|
case "4":
|
|
return ClinVarCodingCode.Code4;
|
|
case "5":
|
|
return ClinVarCodingCode.Code5;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ClinVarCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ClinVarCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ClinVarCodingCode.Code1:
|
|
serializer.Serialize(writer, "1");
|
|
return;
|
|
case ClinVarCodingCode.Code2:
|
|
serializer.Serialize(writer, "2");
|
|
return;
|
|
case ClinVarCodingCode.Code3:
|
|
serializer.Serialize(writer, "3");
|
|
return;
|
|
case ClinVarCodingCode.Code4:
|
|
serializer.Serialize(writer, "4");
|
|
return;
|
|
case ClinVarCodingCode.Code5:
|
|
serializer.Serialize(writer, "5");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ClinVarCodingCode");
|
|
}
|
|
|
|
public static readonly ClinVarCodingCodeConverter Singleton = new ClinVarCodingCodeConverter();
|
|
}
|
|
|
|
internal class NgsReportCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(NgsReportCodingCode) || t == typeof(NgsReportCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "array":
|
|
return NgsReportCodingCode.Array;
|
|
case "exome":
|
|
return NgsReportCodingCode.Exome;
|
|
case "genome-long-read":
|
|
return NgsReportCodingCode.GenomeLongRead;
|
|
case "genome-short-read":
|
|
return NgsReportCodingCode.GenomeShortRead;
|
|
case "karyotyping":
|
|
return NgsReportCodingCode.Karyotyping;
|
|
case "other":
|
|
return NgsReportCodingCode.Other;
|
|
case "panel":
|
|
return NgsReportCodingCode.Panel;
|
|
case "single":
|
|
return NgsReportCodingCode.Single;
|
|
}
|
|
throw new Exception("Cannot unmarshal type NgsReportCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (NgsReportCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case NgsReportCodingCode.Array:
|
|
serializer.Serialize(writer, "array");
|
|
return;
|
|
case NgsReportCodingCode.Exome:
|
|
serializer.Serialize(writer, "exome");
|
|
return;
|
|
case NgsReportCodingCode.GenomeLongRead:
|
|
serializer.Serialize(writer, "genome-long-read");
|
|
return;
|
|
case NgsReportCodingCode.GenomeShortRead:
|
|
serializer.Serialize(writer, "genome-short-read");
|
|
return;
|
|
case NgsReportCodingCode.Karyotyping:
|
|
serializer.Serialize(writer, "karyotyping");
|
|
return;
|
|
case NgsReportCodingCode.Other:
|
|
serializer.Serialize(writer, "other");
|
|
return;
|
|
case NgsReportCodingCode.Panel:
|
|
serializer.Serialize(writer, "panel");
|
|
return;
|
|
case NgsReportCodingCode.Single:
|
|
serializer.Serialize(writer, "single");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type NgsReportCodingCode");
|
|
}
|
|
|
|
public static readonly NgsReportCodingCodeConverter Singleton = new NgsReportCodingCodeConverter();
|
|
}
|
|
|
|
internal class UnitConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(Unit) || t == typeof(Unit?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "Months":
|
|
return Unit.Months;
|
|
case "Years":
|
|
return Unit.Years;
|
|
}
|
|
throw new Exception("Cannot unmarshal type Unit");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (Unit)untypedValue;
|
|
switch (value)
|
|
{
|
|
case Unit.Months:
|
|
serializer.Serialize(writer, "Months");
|
|
return;
|
|
case Unit.Years:
|
|
serializer.Serialize(writer, "Years");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type Unit");
|
|
}
|
|
|
|
public static readonly UnitConverter Singleton = new UnitConverter();
|
|
}
|
|
|
|
internal class GenderCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(GenderCodingCode) || t == typeof(GenderCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "female":
|
|
return GenderCodingCode.Female;
|
|
case "male":
|
|
return GenderCodingCode.Male;
|
|
case "other":
|
|
return GenderCodingCode.Other;
|
|
case "unknown":
|
|
return GenderCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type GenderCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (GenderCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case GenderCodingCode.Female:
|
|
serializer.Serialize(writer, "female");
|
|
return;
|
|
case GenderCodingCode.Male:
|
|
serializer.Serialize(writer, "male");
|
|
return;
|
|
case GenderCodingCode.Other:
|
|
serializer.Serialize(writer, "other");
|
|
return;
|
|
case GenderCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type GenderCodingCode");
|
|
}
|
|
|
|
public static readonly GenderCodingCodeConverter Singleton = new GenderCodingCodeConverter();
|
|
}
|
|
|
|
internal class HealthInsuranceCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(HealthInsuranceCodingCode) || t == typeof(HealthInsuranceCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "BEI":
|
|
return HealthInsuranceCodingCode.Bei;
|
|
case "BG":
|
|
return HealthInsuranceCodingCode.Bg;
|
|
case "GKV":
|
|
return HealthInsuranceCodingCode.Gkv;
|
|
case "GPV":
|
|
return HealthInsuranceCodingCode.Gpv;
|
|
case "PKV":
|
|
return HealthInsuranceCodingCode.Pkv;
|
|
case "PPV":
|
|
return HealthInsuranceCodingCode.Ppv;
|
|
case "SEL":
|
|
return HealthInsuranceCodingCode.Sel;
|
|
case "SKT":
|
|
return HealthInsuranceCodingCode.Skt;
|
|
case "SOZ":
|
|
return HealthInsuranceCodingCode.Soz;
|
|
case "UNK":
|
|
return HealthInsuranceCodingCode.Unk;
|
|
}
|
|
throw new Exception("Cannot unmarshal type HealthInsuranceCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (HealthInsuranceCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case HealthInsuranceCodingCode.Bei:
|
|
serializer.Serialize(writer, "BEI");
|
|
return;
|
|
case HealthInsuranceCodingCode.Bg:
|
|
serializer.Serialize(writer, "BG");
|
|
return;
|
|
case HealthInsuranceCodingCode.Gkv:
|
|
serializer.Serialize(writer, "GKV");
|
|
return;
|
|
case HealthInsuranceCodingCode.Gpv:
|
|
serializer.Serialize(writer, "GPV");
|
|
return;
|
|
case HealthInsuranceCodingCode.Pkv:
|
|
serializer.Serialize(writer, "PKV");
|
|
return;
|
|
case HealthInsuranceCodingCode.Ppv:
|
|
serializer.Serialize(writer, "PPV");
|
|
return;
|
|
case HealthInsuranceCodingCode.Sel:
|
|
serializer.Serialize(writer, "SEL");
|
|
return;
|
|
case HealthInsuranceCodingCode.Skt:
|
|
serializer.Serialize(writer, "SKT");
|
|
return;
|
|
case HealthInsuranceCodingCode.Soz:
|
|
serializer.Serialize(writer, "SOZ");
|
|
return;
|
|
case HealthInsuranceCodingCode.Unk:
|
|
serializer.Serialize(writer, "UNK");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type HealthInsuranceCodingCode");
|
|
}
|
|
|
|
public static readonly HealthInsuranceCodingCodeConverter Singleton = new HealthInsuranceCodingCodeConverter();
|
|
}
|
|
|
|
internal class VitalStatusCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(VitalStatusCodingCode) || t == typeof(VitalStatusCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "alive":
|
|
return VitalStatusCodingCode.Alive;
|
|
case "deceased":
|
|
return VitalStatusCodingCode.Deceased;
|
|
}
|
|
throw new Exception("Cannot unmarshal type VitalStatusCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (VitalStatusCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case VitalStatusCodingCode.Alive:
|
|
serializer.Serialize(writer, "alive");
|
|
return;
|
|
case VitalStatusCodingCode.Deceased:
|
|
serializer.Serialize(writer, "deceased");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type VitalStatusCodingCode");
|
|
}
|
|
|
|
public static readonly VitalStatusCodingCodeConverter Singleton = new VitalStatusCodingCodeConverter();
|
|
}
|
|
|
|
internal class EcogCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(EcogCodingCode) || t == typeof(EcogCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "0":
|
|
return EcogCodingCode.Code0;
|
|
case "1":
|
|
return EcogCodingCode.Code1;
|
|
case "2":
|
|
return EcogCodingCode.Code2;
|
|
case "3":
|
|
return EcogCodingCode.Code3;
|
|
case "4":
|
|
return EcogCodingCode.Code4;
|
|
case "5":
|
|
return EcogCodingCode.Code5;
|
|
}
|
|
throw new Exception("Cannot unmarshal type EcogCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (EcogCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case EcogCodingCode.Code0:
|
|
serializer.Serialize(writer, "0");
|
|
return;
|
|
case EcogCodingCode.Code1:
|
|
serializer.Serialize(writer, "1");
|
|
return;
|
|
case EcogCodingCode.Code2:
|
|
serializer.Serialize(writer, "2");
|
|
return;
|
|
case EcogCodingCode.Code3:
|
|
serializer.Serialize(writer, "3");
|
|
return;
|
|
case EcogCodingCode.Code4:
|
|
serializer.Serialize(writer, "4");
|
|
return;
|
|
case EcogCodingCode.Code5:
|
|
serializer.Serialize(writer, "5");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type EcogCodingCode");
|
|
}
|
|
|
|
public static readonly EcogCodingCodeConverter Singleton = new EcogCodingCodeConverter();
|
|
}
|
|
|
|
internal class MolecularDiagnosticReportCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(MolecularDiagnosticReportCodingCode) || t == typeof(MolecularDiagnosticReportCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "FISH":
|
|
return MolecularDiagnosticReportCodingCode.Fish;
|
|
case "PCR":
|
|
return MolecularDiagnosticReportCodingCode.Pcr;
|
|
case "array":
|
|
return MolecularDiagnosticReportCodingCode.Array;
|
|
case "exome":
|
|
return MolecularDiagnosticReportCodingCode.Exome;
|
|
case "fusion-panel":
|
|
return MolecularDiagnosticReportCodingCode.FusionPanel;
|
|
case "gene-panel":
|
|
return MolecularDiagnosticReportCodingCode.GenePanel;
|
|
case "genome-long-read":
|
|
return MolecularDiagnosticReportCodingCode.GenomeLongRead;
|
|
case "genome-short-read":
|
|
return MolecularDiagnosticReportCodingCode.GenomeShortRead;
|
|
case "karyotyping":
|
|
return MolecularDiagnosticReportCodingCode.Karyotyping;
|
|
case "other":
|
|
return MolecularDiagnosticReportCodingCode.Other;
|
|
case "panel":
|
|
return MolecularDiagnosticReportCodingCode.Panel;
|
|
case "single":
|
|
return MolecularDiagnosticReportCodingCode.Single;
|
|
}
|
|
throw new Exception("Cannot unmarshal type MolecularDiagnosticReportCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (MolecularDiagnosticReportCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case MolecularDiagnosticReportCodingCode.Fish:
|
|
serializer.Serialize(writer, "FISH");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.Pcr:
|
|
serializer.Serialize(writer, "PCR");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.Array:
|
|
serializer.Serialize(writer, "array");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.Exome:
|
|
serializer.Serialize(writer, "exome");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.FusionPanel:
|
|
serializer.Serialize(writer, "fusion-panel");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.GenePanel:
|
|
serializer.Serialize(writer, "gene-panel");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.GenomeLongRead:
|
|
serializer.Serialize(writer, "genome-long-read");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.GenomeShortRead:
|
|
serializer.Serialize(writer, "genome-short-read");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.Karyotyping:
|
|
serializer.Serialize(writer, "karyotyping");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.Other:
|
|
serializer.Serialize(writer, "other");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.Panel:
|
|
serializer.Serialize(writer, "panel");
|
|
return;
|
|
case MolecularDiagnosticReportCodingCode.Single:
|
|
serializer.Serialize(writer, "single");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type MolecularDiagnosticReportCodingCode");
|
|
}
|
|
|
|
public static readonly MolecularDiagnosticReportCodingCodeConverter Singleton = new MolecularDiagnosticReportCodingCodeConverter();
|
|
}
|
|
|
|
internal class ResponseMethodCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(ResponseMethodCodingCode) || t == typeof(ResponseMethodCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "RANO":
|
|
return ResponseMethodCodingCode.Rano;
|
|
case "RECIST":
|
|
return ResponseMethodCodingCode.Recist;
|
|
}
|
|
throw new Exception("Cannot unmarshal type ResponseMethodCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (ResponseMethodCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case ResponseMethodCodingCode.Rano:
|
|
serializer.Serialize(writer, "RANO");
|
|
return;
|
|
case ResponseMethodCodingCode.Recist:
|
|
serializer.Serialize(writer, "RECIST");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type ResponseMethodCodingCode");
|
|
}
|
|
|
|
public static readonly ResponseMethodCodingCodeConverter Singleton = new ResponseMethodCodingCodeConverter();
|
|
}
|
|
|
|
internal class RecistCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(RecistCodingCode) || t == typeof(RecistCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "CR":
|
|
return RecistCodingCode.Cr;
|
|
case "MR":
|
|
return RecistCodingCode.Mr;
|
|
case "NA":
|
|
return RecistCodingCode.Na;
|
|
case "PD":
|
|
return RecistCodingCode.Pd;
|
|
case "PR":
|
|
return RecistCodingCode.Pr;
|
|
case "SD":
|
|
return RecistCodingCode.Sd;
|
|
}
|
|
throw new Exception("Cannot unmarshal type RecistCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (RecistCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case RecistCodingCode.Cr:
|
|
serializer.Serialize(writer, "CR");
|
|
return;
|
|
case RecistCodingCode.Mr:
|
|
serializer.Serialize(writer, "MR");
|
|
return;
|
|
case RecistCodingCode.Na:
|
|
serializer.Serialize(writer, "NA");
|
|
return;
|
|
case RecistCodingCode.Pd:
|
|
serializer.Serialize(writer, "PD");
|
|
return;
|
|
case RecistCodingCode.Pr:
|
|
serializer.Serialize(writer, "PR");
|
|
return;
|
|
case RecistCodingCode.Sd:
|
|
serializer.Serialize(writer, "SD");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type RecistCodingCode");
|
|
}
|
|
|
|
public static readonly RecistCodingCodeConverter Singleton = new RecistCodingCodeConverter();
|
|
}
|
|
|
|
internal class TumorSpecimenCollectionLocalizationCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(TumorSpecimenCollectionLocalizationCodingCode) || t == typeof(TumorSpecimenCollectionLocalizationCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "cellfree-dna":
|
|
return TumorSpecimenCollectionLocalizationCodingCode.CellfreeDna;
|
|
case "local-recurrence":
|
|
return TumorSpecimenCollectionLocalizationCodingCode.LocalRecurrence;
|
|
case "metastasis":
|
|
return TumorSpecimenCollectionLocalizationCodingCode.Metastasis;
|
|
case "primary-tumor":
|
|
return TumorSpecimenCollectionLocalizationCodingCode.PrimaryTumor;
|
|
case "regional-lymph-nodes":
|
|
return TumorSpecimenCollectionLocalizationCodingCode.RegionalLymphNodes;
|
|
case "unknown":
|
|
return TumorSpecimenCollectionLocalizationCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type TumorSpecimenCollectionLocalizationCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (TumorSpecimenCollectionLocalizationCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case TumorSpecimenCollectionLocalizationCodingCode.CellfreeDna:
|
|
serializer.Serialize(writer, "cellfree-dna");
|
|
return;
|
|
case TumorSpecimenCollectionLocalizationCodingCode.LocalRecurrence:
|
|
serializer.Serialize(writer, "local-recurrence");
|
|
return;
|
|
case TumorSpecimenCollectionLocalizationCodingCode.Metastasis:
|
|
serializer.Serialize(writer, "metastasis");
|
|
return;
|
|
case TumorSpecimenCollectionLocalizationCodingCode.PrimaryTumor:
|
|
serializer.Serialize(writer, "primary-tumor");
|
|
return;
|
|
case TumorSpecimenCollectionLocalizationCodingCode.RegionalLymphNodes:
|
|
serializer.Serialize(writer, "regional-lymph-nodes");
|
|
return;
|
|
case TumorSpecimenCollectionLocalizationCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type TumorSpecimenCollectionLocalizationCodingCode");
|
|
}
|
|
|
|
public static readonly TumorSpecimenCollectionLocalizationCodingCodeConverter Singleton = new TumorSpecimenCollectionLocalizationCodingCodeConverter();
|
|
}
|
|
|
|
internal class TumorSpecimenCollectionMethodCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(TumorSpecimenCollectionMethodCodingCode) || t == typeof(TumorSpecimenCollectionMethodCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "biopsy":
|
|
return TumorSpecimenCollectionMethodCodingCode.Biopsy;
|
|
case "cytology":
|
|
return TumorSpecimenCollectionMethodCodingCode.Cytology;
|
|
case "liquid-biopsy":
|
|
return TumorSpecimenCollectionMethodCodingCode.LiquidBiopsy;
|
|
case "resection":
|
|
return TumorSpecimenCollectionMethodCodingCode.Resection;
|
|
case "unknown":
|
|
return TumorSpecimenCollectionMethodCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type TumorSpecimenCollectionMethodCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (TumorSpecimenCollectionMethodCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case TumorSpecimenCollectionMethodCodingCode.Biopsy:
|
|
serializer.Serialize(writer, "biopsy");
|
|
return;
|
|
case TumorSpecimenCollectionMethodCodingCode.Cytology:
|
|
serializer.Serialize(writer, "cytology");
|
|
return;
|
|
case TumorSpecimenCollectionMethodCodingCode.LiquidBiopsy:
|
|
serializer.Serialize(writer, "liquid-biopsy");
|
|
return;
|
|
case TumorSpecimenCollectionMethodCodingCode.Resection:
|
|
serializer.Serialize(writer, "resection");
|
|
return;
|
|
case TumorSpecimenCollectionMethodCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type TumorSpecimenCollectionMethodCodingCode");
|
|
}
|
|
|
|
public static readonly TumorSpecimenCollectionMethodCodingCodeConverter Singleton = new TumorSpecimenCollectionMethodCodingCodeConverter();
|
|
}
|
|
|
|
internal class TumorSpecimenCodingCodeConverter : JsonConverter
|
|
{
|
|
public override bool CanConvert(Type t) => t == typeof(TumorSpecimenCodingCode) || t == typeof(TumorSpecimenCodingCode?);
|
|
|
|
public override object ReadJson(JsonReader reader, Type t, object existingValue, JsonSerializer serializer)
|
|
{
|
|
if (reader.TokenType == JsonToken.Null) return null;
|
|
var value = serializer.Deserialize<string>(reader);
|
|
switch (value)
|
|
{
|
|
case "FFPE":
|
|
return TumorSpecimenCodingCode.Ffpe;
|
|
case "cryo-frozen":
|
|
return TumorSpecimenCodingCode.CryoFrozen;
|
|
case "fresh-tissue":
|
|
return TumorSpecimenCodingCode.FreshTissue;
|
|
case "liquid-biopsy":
|
|
return TumorSpecimenCodingCode.LiquidBiopsy;
|
|
case "unknown":
|
|
return TumorSpecimenCodingCode.Unknown;
|
|
}
|
|
throw new Exception("Cannot unmarshal type TumorSpecimenCodingCode");
|
|
}
|
|
|
|
public override void WriteJson(JsonWriter writer, object untypedValue, JsonSerializer serializer)
|
|
{
|
|
if (untypedValue == null)
|
|
{
|
|
serializer.Serialize(writer, null);
|
|
return;
|
|
}
|
|
var value = (TumorSpecimenCodingCode)untypedValue;
|
|
switch (value)
|
|
{
|
|
case TumorSpecimenCodingCode.Ffpe:
|
|
serializer.Serialize(writer, "FFPE");
|
|
return;
|
|
case TumorSpecimenCodingCode.CryoFrozen:
|
|
serializer.Serialize(writer, "cryo-frozen");
|
|
return;
|
|
case TumorSpecimenCodingCode.FreshTissue:
|
|
serializer.Serialize(writer, "fresh-tissue");
|
|
return;
|
|
case TumorSpecimenCodingCode.LiquidBiopsy:
|
|
serializer.Serialize(writer, "liquid-biopsy");
|
|
return;
|
|
case TumorSpecimenCodingCode.Unknown:
|
|
serializer.Serialize(writer, "unknown");
|
|
return;
|
|
}
|
|
throw new Exception("Cannot marshal type TumorSpecimenCodingCode");
|
|
}
|
|
|
|
public static readonly TumorSpecimenCodingCodeConverter Singleton = new TumorSpecimenCodingCodeConverter();
|
|
}
|
|
}
|