mirror of
https://github.com/dnpm-dip/mv64e-mtb-dto-go.git
synced 2025-07-01 10:22:55 +00:00
Initial commit
This commit is contained in:
2
.gitignore
vendored
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2
.gitignore
vendored
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@ -0,0 +1,2 @@
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||||
.idea/
|
||||
*.iml
|
||||
21
LICENSE.txt
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21
LICENSE.txt
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@ -0,0 +1,21 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2024 Paul-Christian Volkmer
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||
of this software and associated documentation files (the "Software"), to deal
|
||||
in the Software without restriction, including without limitation the rights
|
||||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||
copies of the Software, and to permit persons to whom the Software is
|
||||
furnished to do so, subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
||||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
||||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
||||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
||||
SOFTWARE.
|
||||
5
README.md
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5
README.md
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||||
# DNPM:DIP MTB Data-Transfer-Objects for Golang
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Serialization and deserialization of DNPM:DIP MTB DTOs for the Go programming language.
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This crate provides DNPM:DIP data model for use with "Modellvorhaben gem. §64e SGB V"
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||||
740
mtb.go
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740
mtb.go
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@ -0,0 +1,740 @@
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package mtb
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import "encoding/json"
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func UnmarshalMtb(data []byte) (Mtb, error) {
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var r Mtb
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err := json.Unmarshal(data, &r)
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return r, err
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}
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|
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func (r *Mtb) Marshal() ([]byte, error) {
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return json.Marshal(r)
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}
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type Mtb struct {
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||||
CarePlans []MTBCarePlan `json:"carePlans,omitempty"`
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||||
ClaimResponses []ClaimResponse `json:"claimResponses,omitempty"`
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Claims []ClaimElement `json:"claims,omitempty"`
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||||
Consent Consent `json:"consent"`
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||||
Diagnoses []MTBDiagnosis `json:"diagnoses,omitempty"`
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||||
EcogStatus []PerformanceStatus `json:"ecogStatus,omitempty"`
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||||
Episode *MTBEpisode `json:"episode,omitempty"`
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||||
GeneticCounsellingRequests []GeneticCounselingRecommendation `json:"geneticCounsellingRequests,omitempty"`
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||||
HistologyReports []HistologyReport `json:"histologyReports,omitempty"`
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||||
LastGuidelineTherapies []LastGuidelineTherapyElement `json:"lastGuidelineTherapies,omitempty"`
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||||
MolecularTherapies []MolecularTherapy `json:"molecularTherapies,omitempty"`
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NgsReports []SomaticNGSReport `json:"ngsReports,omitempty"`
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Patient MtbPatient `json:"patient"`
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PreviousGuidelineTherapies []LastGuidelineTherapyElement `json:"previousGuidelineTherapies,omitempty"`
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Recommendations []MTBMedicationRecommendation `json:"recommendations,omitempty"`
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Responses []Response `json:"responses,omitempty"`
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Specimens []SpecimenElement `json:"specimens,omitempty"`
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StudyInclusionRequests []StudyEnrollmentRecommendation `json:"studyInclusionRequests,omitempty"`
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}
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type MTBCarePlan struct {
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Description *string `json:"description,omitempty"`
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Diagnosis *string `json:"diagnosis,omitempty"`
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GeneticCounsellingRequest *string `json:"geneticCounsellingRequest,omitempty"`
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ID string `json:"id"`
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IssuedOn *string `json:"issuedOn,omitempty"`
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NoTargetFinding *NoTargetFinding `json:"noTargetFinding,omitempty"`
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Patient NoTargetFindingPatient `json:"patient"`
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Recommendations []string `json:"recommendations,omitempty"`
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StudyInclusionRequests []string `json:"studyInclusionRequests,omitempty"`
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}
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type NoTargetFinding struct {
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Diagnosis string `json:"diagnosis"`
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IssuedOn *string `json:"issuedOn,omitempty"`
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Patient NoTargetFindingPatient `json:"patient"`
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}
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|
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type NoTargetFindingPatient struct {
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ID string `json:"id"`
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Type PatientType `json:"type"`
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}
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|
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type ClaimResponse struct {
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Claim ClaimResponseClaim `json:"claim"`
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ID string `json:"id"`
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IssuedOn string `json:"issuedOn"`
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Patient NoTargetFindingPatient `json:"patient"`
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Reason *ClaimResponseStatusReason `json:"reason,omitempty"`
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Status CodingClaimResponseStatus `json:"status"`
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}
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|
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type ClaimResponseClaim struct {
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ID *string `json:"id,omitempty"`
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||||
Type *ClaimResponseClaimType `json:"type,omitempty"`
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}
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type CodingClaimResponseStatus struct {
|
||||
Code ClaimResponseStatus `json:"code"`
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||||
Display *string `json:"display,omitempty"`
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||||
System *string `json:"system,omitempty"`
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}
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type ClaimElement struct {
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ID string `json:"id"`
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IssuedOn string `json:"issuedOn"`
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Patient NoTargetFindingPatient `json:"patient"`
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Therapy *string `json:"therapy,omitempty"`
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||||
}
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type Consent struct {
|
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ID *string `json:"id,omitempty"`
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Patient *NoTargetFindingPatient `json:"patient,omitempty"`
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Status *ConsentStatus `json:"status,omitempty"`
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}
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|
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type MTBDiagnosis struct {
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Code Coding `json:"code"`
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GuidelineTreatmentStatus *Coding `json:"guidelineTreatmentStatus,omitempty"`
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HistologyResults []string `json:"histologyResults,omitempty"`
|
||||
IcdO3T *Coding `json:"icdO3T,omitempty"`
|
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ID string `json:"id"`
|
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Patient NoTargetFindingPatient `json:"patient"`
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RecordedOn *string `json:"recordedOn,omitempty"`
|
||||
StatusHistory []StatusHistory `json:"statusHistory,omitempty"`
|
||||
WhoGrade *Coding `json:"whoGrade,omitempty"`
|
||||
}
|
||||
|
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type Coding struct {
|
||||
Code string `json:"code"`
|
||||
Display *string `json:"display,omitempty"`
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||||
System *string `json:"system,omitempty"`
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Version *string `json:"version,omitempty"`
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}
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|
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type StatusHistory struct {
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Date string `json:"date"`
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Status MTBDiagnosisTumorSpread `json:"status"`
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}
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type PerformanceStatus struct {
|
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EffectiveDate string `json:"effectiveDate"`
|
||||
ID string `json:"id"`
|
||||
Patient NoTargetFindingPatient `json:"patient"`
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Value CodingECOG `json:"value"`
|
||||
}
|
||||
|
||||
type CodingECOG struct {
|
||||
Code PurpleCode `json:"code"`
|
||||
Display *string `json:"display,omitempty"`
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||||
System *string `json:"system,omitempty"`
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||||
Version *string `json:"version,omitempty"`
|
||||
}
|
||||
|
||||
type MTBEpisode struct {
|
||||
ID string `json:"id"`
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Patient NoTargetFindingPatient `json:"patient"`
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||||
Period PeriodLocalDate `json:"period"`
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||||
}
|
||||
|
||||
type PeriodLocalDate struct {
|
||||
End *string `json:"end,omitempty"`
|
||||
Start string `json:"start"`
|
||||
}
|
||||
|
||||
type GeneticCounselingRecommendation struct {
|
||||
ID string `json:"id"`
|
||||
IssuedOn *string `json:"issuedOn,omitempty"`
|
||||
Patient NoTargetFindingPatient `json:"patient"`
|
||||
Reason string `json:"reason"`
|
||||
}
|
||||
|
||||
type HistologyReport struct {
|
||||
ID string `json:"id"`
|
||||
IssuedOn string `json:"issuedOn"`
|
||||
Patient NoTargetFindingPatient `json:"patient"`
|
||||
Specimen HistologyReportSpecimen `json:"specimen"`
|
||||
TumorCellContent *TumorCellContent `json:"tumorCellContent,omitempty"`
|
||||
TumorMorphology *TumorMorphology `json:"tumorMorphology,omitempty"`
|
||||
}
|
||||
|
||||
type HistologyReportSpecimen struct {
|
||||
ID string `json:"id"`
|
||||
Type SpecimenType `json:"type"`
|
||||
}
|
||||
|
||||
type TumorCellContent struct {
|
||||
ID string `json:"id"`
|
||||
Method TumorCellContentMethod `json:"method"`
|
||||
Specimen string `json:"specimen"`
|
||||
Value float64 `json:"value"`
|
||||
}
|
||||
|
||||
type TumorMorphology struct {
|
||||
ID string `json:"id"`
|
||||
Note *string `json:"note,omitempty"`
|
||||
Patient NoTargetFindingPatient `json:"patient"`
|
||||
Specimen string `json:"specimen"`
|
||||
Value Coding `json:"value"`
|
||||
}
|
||||
|
||||
type LastGuidelineTherapyElement struct {
|
||||
BasedOn *string `json:"basedOn,omitempty"`
|
||||
Diagnosis *string `json:"diagnosis,omitempty"`
|
||||
ID string `json:"id"`
|
||||
Medication []Coding `json:"medication,omitempty"`
|
||||
NotDoneReason *CodingTherapyStatusReason `json:"notDoneReason,omitempty"`
|
||||
Note *string `json:"note,omitempty"`
|
||||
Patient NoTargetFindingPatient `json:"patient"`
|
||||
Period *PeriodLocalDate `json:"period,omitempty"`
|
||||
ReasonStopped *CodingTherapyStatusReason `json:"reasonStopped,omitempty"`
|
||||
RecordedOn *string `json:"recordedOn,omitempty"`
|
||||
Status *TherapyStatus `json:"status,omitempty"`
|
||||
TherapyLine *int64 `json:"therapyLine,omitempty"`
|
||||
}
|
||||
|
||||
type CodingTherapyStatusReason struct {
|
||||
Code NotDoneReasonCode `json:"code"`
|
||||
Display *string `json:"display,omitempty"`
|
||||
System *string `json:"system,omitempty"`
|
||||
Version *string `json:"version,omitempty"`
|
||||
}
|
||||
|
||||
type MolecularTherapy struct {
|
||||
History []LastGuidelineTherapyElement `json:"history"`
|
||||
}
|
||||
|
||||
type SomaticNGSReport struct {
|
||||
Brcaness *float64 `json:"brcaness,omitempty"`
|
||||
CopyNumberVariants []Cnv `json:"copyNumberVariants,omitempty"`
|
||||
DnaFusions []DNAFusion `json:"dnaFusions,omitempty"`
|
||||
ID string `json:"id"`
|
||||
IssueDate *string `json:"issueDate,omitempty"`
|
||||
Metadata []Metadatum `json:"metadata"`
|
||||
MSI *float64 `json:"msi,omitempty"`
|
||||
Patient NoTargetFindingPatient `json:"patient"`
|
||||
RnaFusions []RNAFusion `json:"rnaFusions,omitempty"`
|
||||
RnaSeqs []RNASeq `json:"rnaSeqs,omitempty"`
|
||||
SequencingType Coding `json:"sequencingType"`
|
||||
SimpleVariants []Snv `json:"simpleVariants,omitempty"`
|
||||
Specimen NgsReportSpecimen `json:"specimen"`
|
||||
Tmb *float64 `json:"tmb,omitempty"`
|
||||
TumorCellContent *TumorCellContent `json:"tumorCellContent,omitempty"`
|
||||
}
|
||||
|
||||
type Cnv struct {
|
||||
Chromosome Chromosome `json:"chromosome"`
|
||||
CNA *float64 `json:"cnA,omitempty"`
|
||||
CNB *float64 `json:"cnB,omitempty"`
|
||||
CopyNumberNeutralLoH []CopyNumberNeutralLoH `json:"copyNumberNeutralLoH,omitempty"`
|
||||
EndRange EndRange `json:"endRange"`
|
||||
ID string `json:"id"`
|
||||
RelativeCopyNumber *float64 `json:"relativeCopyNumber,omitempty"`
|
||||
ReportedAffectedGenes []ReportedAffectedGene `json:"reportedAffectedGenes,omitempty"`
|
||||
ReportedFocality *string `json:"reportedFocality,omitempty"`
|
||||
StartRange StartRange `json:"startRange"`
|
||||
TotalCopyNumber *int64 `json:"totalCopyNumber,omitempty"`
|
||||
Type CNVType `json:"type"`
|
||||
}
|
||||
|
||||
type CopyNumberNeutralLoH struct {
|
||||
EnsemblID *string `json:"ensemblId,omitempty"`
|
||||
HgncID *string `json:"hgncId,omitempty"`
|
||||
}
|
||||
|
||||
type EndRange struct {
|
||||
End *float64 `json:"end,omitempty"`
|
||||
Start float64 `json:"start"`
|
||||
}
|
||||
|
||||
type ReportedAffectedGene struct {
|
||||
EnsemblID *string `json:"ensemblId,omitempty"`
|
||||
HgncID *string `json:"hgncId,omitempty"`
|
||||
}
|
||||
|
||||
type StartRange struct {
|
||||
End *float64 `json:"end,omitempty"`
|
||||
Start float64 `json:"start"`
|
||||
}
|
||||
|
||||
type DNAFusion struct {
|
||||
FusionPartner3Prime DnaFusionFusionPartner3Prime `json:"fusionPartner3prime"`
|
||||
FusionPartner5Prime DnaFusionFusionPartner5Prime `json:"fusionPartner5prime"`
|
||||
ID string `json:"id"`
|
||||
ReportedNumReads int64 `json:"reportedNumReads"`
|
||||
}
|
||||
|
||||
type DnaFusionFusionPartner3Prime struct {
|
||||
Chromosome Chromosome `json:"chromosome"`
|
||||
Gene PurpleGene `json:"gene"`
|
||||
Position float64 `json:"position"`
|
||||
}
|
||||
|
||||
type PurpleGene struct {
|
||||
EnsemblID *string `json:"ensemblId,omitempty"`
|
||||
HgncID *string `json:"hgncId,omitempty"`
|
||||
}
|
||||
|
||||
type DnaFusionFusionPartner5Prime struct {
|
||||
Chromosome Chromosome `json:"chromosome"`
|
||||
Gene FluffyGene `json:"gene"`
|
||||
Position float64 `json:"position"`
|
||||
}
|
||||
|
||||
type FluffyGene struct {
|
||||
EnsemblID *string `json:"ensemblId,omitempty"`
|
||||
HgncID *string `json:"hgncId,omitempty"`
|
||||
}
|
||||
|
||||
type Metadatum struct {
|
||||
KitManufacturer string `json:"kitManufacturer"`
|
||||
KitType string `json:"kitType"`
|
||||
Pipeline string `json:"pipeline"`
|
||||
ReferenceGenome string `json:"referenceGenome"`
|
||||
Sequencer string `json:"sequencer"`
|
||||
}
|
||||
|
||||
type RNAFusion struct {
|
||||
CosmicID *string `json:"cosmicId,omitempty"`
|
||||
Effect *string `json:"effect,omitempty"`
|
||||
FusionPartner3Prime RnaFusionFusionPartner3Prime `json:"fusionPartner3prime"`
|
||||
FusionPartner5Prime RnaFusionFusionPartner5Prime `json:"fusionPartner5prime"`
|
||||
ID string `json:"id"`
|
||||
ReportedNumReads int64 `json:"reportedNumReads"`
|
||||
}
|
||||
|
||||
type RnaFusionFusionPartner3Prime struct {
|
||||
Exon string `json:"exon"`
|
||||
Gene TentacledGene `json:"gene"`
|
||||
Position float64 `json:"position"`
|
||||
Strand StrandEnum `json:"strand"`
|
||||
TranscriptID string `json:"transcriptId"`
|
||||
}
|
||||
|
||||
type TentacledGene struct {
|
||||
EnsemblID *string `json:"ensemblId,omitempty"`
|
||||
HgncID *string `json:"hgncId,omitempty"`
|
||||
}
|
||||
|
||||
type RnaFusionFusionPartner5Prime struct {
|
||||
Exon string `json:"exon"`
|
||||
Gene StickyGene `json:"gene"`
|
||||
Position float64 `json:"position"`
|
||||
Strand StrandEnum `json:"strand"`
|
||||
TranscriptID string `json:"transcriptId"`
|
||||
}
|
||||
|
||||
type StickyGene struct {
|
||||
EnsemblID *string `json:"ensemblId,omitempty"`
|
||||
HgncID *string `json:"hgncId,omitempty"`
|
||||
}
|
||||
|
||||
type RNASeq struct {
|
||||
CohortRanking *int64 `json:"cohortRanking,omitempty"`
|
||||
EnsemblID string `json:"ensemblId"`
|
||||
EntrezID string `json:"entrezId"`
|
||||
FragmentsPerKilobaseMillion float64 `json:"fragmentsPerKilobaseMillion"`
|
||||
FromNGS bool `json:"fromNGS"`
|
||||
Gene RnaSeqGene `json:"gene"`
|
||||
ID string `json:"id"`
|
||||
LibrarySize int64 `json:"librarySize"`
|
||||
RawCounts int64 `json:"rawCounts"`
|
||||
TissueCorrectedExpression bool `json:"tissueCorrectedExpression"`
|
||||
TranscriptID string `json:"transcriptId"`
|
||||
}
|
||||
|
||||
type RnaSeqGene struct {
|
||||
EnsemblID *string `json:"ensemblId,omitempty"`
|
||||
HgncID *string `json:"hgncId,omitempty"`
|
||||
}
|
||||
|
||||
type Snv struct {
|
||||
AllelicFrequency float64 `json:"allelicFrequency"`
|
||||
AltAllele string `json:"altAllele"`
|
||||
AminoAcidChange *Coding `json:"aminoAcidChange,omitempty"`
|
||||
Chromosome Chromosome `json:"chromosome"`
|
||||
CosmicID *string `json:"cosmicId,omitempty"`
|
||||
DBSNPID *string `json:"dbSNPId,omitempty"`
|
||||
DnaChange *Coding `json:"dnaChange,omitempty"`
|
||||
Gene *SimpleVariantGene `json:"gene,omitempty"`
|
||||
ID string `json:"id"`
|
||||
Interpretation *Coding `json:"interpretation,omitempty"`
|
||||
ReadDepth int64 `json:"readDepth"`
|
||||
RefAllele string `json:"refAllele"`
|
||||
StartEnd StartEnd `json:"startEnd"`
|
||||
}
|
||||
|
||||
type SimpleVariantGene struct {
|
||||
EnsemblID *string `json:"ensemblId,omitempty"`
|
||||
HgncID *string `json:"hgncId,omitempty"`
|
||||
}
|
||||
|
||||
type StartEnd struct {
|
||||
End *float64 `json:"end,omitempty"`
|
||||
Start float64 `json:"start"`
|
||||
}
|
||||
|
||||
type NgsReportSpecimen struct {
|
||||
ID string `json:"id"`
|
||||
Type SpecimenType `json:"type"`
|
||||
}
|
||||
|
||||
type MtbPatient struct {
|
||||
Address *Address `json:"address,omitempty"`
|
||||
BirthDate string `json:"birthDate"`
|
||||
DateOfDeath *string `json:"dateOfDeath,omitempty"`
|
||||
Gender CodingGender `json:"gender"`
|
||||
ID string `json:"id"`
|
||||
Insurance *string `json:"insurance,omitempty"`
|
||||
}
|
||||
|
||||
type Address struct {
|
||||
MunicipalityCode string `json:"municipalityCode"`
|
||||
}
|
||||
|
||||
type CodingGender struct {
|
||||
Code Gender `json:"code"`
|
||||
Display *string `json:"display,omitempty"`
|
||||
System *string `json:"system,omitempty"`
|
||||
Version *string `json:"version,omitempty"`
|
||||
}
|
||||
|
||||
type MTBMedicationRecommendation struct {
|
||||
Diagnosis string `json:"diagnosis"`
|
||||
ID string `json:"id"`
|
||||
IssuedOn *string `json:"issuedOn,omitempty"`
|
||||
LevelOfEvidence *LevelOfEvidence `json:"levelOfEvidence,omitempty"`
|
||||
Medication []Coding `json:"medication,omitempty"`
|
||||
NgsReport *string `json:"ngsReport,omitempty"`
|
||||
Patient NoTargetFindingPatient `json:"patient"`
|
||||
Priority *TherapyRecommendationPriority `json:"priority,omitempty"`
|
||||
SupportingVariants []string `json:"supportingVariants,omitempty"`
|
||||
}
|
||||
|
||||
type LevelOfEvidence struct {
|
||||
Addendums []CodingLevelOfEvidenceAddendum `json:"addendums,omitempty"`
|
||||
Grading CodingLevelOfEvidenceGrading `json:"grading"`
|
||||
Publications []ReferencePublication `json:"publications,omitempty"`
|
||||
}
|
||||
|
||||
type CodingLevelOfEvidenceAddendum struct {
|
||||
Code AddendumCode `json:"code"`
|
||||
Display *string `json:"display,omitempty"`
|
||||
System *string `json:"system,omitempty"`
|
||||
Version *string `json:"version,omitempty"`
|
||||
}
|
||||
|
||||
type CodingLevelOfEvidenceGrading struct {
|
||||
Code GradingCode `json:"code"`
|
||||
Display *string `json:"display,omitempty"`
|
||||
System *string `json:"system,omitempty"`
|
||||
Version *string `json:"version,omitempty"`
|
||||
}
|
||||
|
||||
type ReferencePublication struct {
|
||||
EXTID *EXTID `json:"extId,omitempty"`
|
||||
Type *string `json:"type,omitempty"`
|
||||
URI *string `json:"uri,omitempty"`
|
||||
}
|
||||
|
||||
type EXTID struct {
|
||||
System *System `json:"system,omitempty"`
|
||||
Value string `json:"value"`
|
||||
}
|
||||
|
||||
type Response struct {
|
||||
EffectiveDate string `json:"effectiveDate"`
|
||||
ID string `json:"id"`
|
||||
Patient NoTargetFindingPatient `json:"patient"`
|
||||
Therapy ResponseTherapy `json:"therapy"`
|
||||
Value CodingRECIST `json:"value"`
|
||||
}
|
||||
|
||||
type ResponseTherapy struct {
|
||||
ID string `json:"id"`
|
||||
Type ResponseTherapyType `json:"type"`
|
||||
}
|
||||
|
||||
type CodingRECIST struct {
|
||||
Code FluffyCode `json:"code"`
|
||||
Display *string `json:"display,omitempty"`
|
||||
System *string `json:"system,omitempty"`
|
||||
Version *string `json:"version,omitempty"`
|
||||
}
|
||||
|
||||
type SpecimenElement struct {
|
||||
Collection *Collection `json:"collection,omitempty"`
|
||||
Icd10 *Coding `json:"icd10,omitempty"`
|
||||
ID string `json:"id"`
|
||||
Patient NoTargetFindingPatient `json:"patient"`
|
||||
Type *CodingTumorSpecimenType `json:"type,omitempty"`
|
||||
}
|
||||
|
||||
type Collection struct {
|
||||
Date string `json:"date"`
|
||||
Localization CodingTumorSpecimenCollectionLocalization `json:"localization"`
|
||||
Method CodingTumorSpecimenCollectionMethod `json:"method"`
|
||||
}
|
||||
|
||||
type CodingTumorSpecimenCollectionLocalization struct {
|
||||
Code TumorSpecimenCollectionLocalization `json:"code"`
|
||||
Display *string `json:"display,omitempty"`
|
||||
System *string `json:"system,omitempty"`
|
||||
}
|
||||
|
||||
type CodingTumorSpecimenCollectionMethod struct {
|
||||
Code TumorSpecimenCollectionMethod `json:"code"`
|
||||
Display *string `json:"display,omitempty"`
|
||||
System *string `json:"system,omitempty"`
|
||||
}
|
||||
|
||||
type CodingTumorSpecimenType struct {
|
||||
Code TumorSpecimenType `json:"code"`
|
||||
Display *string `json:"display,omitempty"`
|
||||
System *string `json:"system,omitempty"`
|
||||
}
|
||||
|
||||
type StudyEnrollmentRecommendation struct {
|
||||
ID string `json:"id"`
|
||||
IssuedOn *string `json:"issuedOn,omitempty"`
|
||||
NctNumber string `json:"nctNumber"`
|
||||
Patient NoTargetFindingPatient `json:"patient"`
|
||||
Reason string `json:"reason"`
|
||||
}
|
||||
|
||||
type PatientType string
|
||||
|
||||
const (
|
||||
Patient PatientType = "Patient"
|
||||
)
|
||||
|
||||
type ClaimResponseClaimType string
|
||||
|
||||
const (
|
||||
Claim ClaimResponseClaimType = "Claim"
|
||||
)
|
||||
|
||||
type ClaimResponseStatusReason string
|
||||
|
||||
const (
|
||||
ApprovalRevocation ClaimResponseStatusReason = "approval-revocation"
|
||||
ClaimResponseStatusReasonOther ClaimResponseStatusReason = "other"
|
||||
ClaimResponseStatusReasonUnknown ClaimResponseStatusReason = "unknown"
|
||||
FormalReasons ClaimResponseStatusReason = "formal-reasons"
|
||||
InclusionInStudy ClaimResponseStatusReason = "inclusion-in-study"
|
||||
InsufficientEvidence ClaimResponseStatusReason = "insufficient-evidence"
|
||||
OtherTherapyRecommended ClaimResponseStatusReason = "other-therapy-recommended"
|
||||
StandardTherapyNotExhausted ClaimResponseStatusReason = "standard-therapy-not-exhausted"
|
||||
)
|
||||
|
||||
type ClaimResponseStatus string
|
||||
|
||||
const (
|
||||
Accepted ClaimResponseStatus = "accepted"
|
||||
ClaimResponseStatusRejected ClaimResponseStatus = "rejected"
|
||||
ClaimResponseStatusUnknown ClaimResponseStatus = "unknown"
|
||||
)
|
||||
|
||||
type ConsentStatus string
|
||||
|
||||
const (
|
||||
Active ConsentStatus = "active"
|
||||
ConsentStatusRejected ConsentStatus = "rejected"
|
||||
)
|
||||
|
||||
type MTBDiagnosisTumorSpread string
|
||||
|
||||
const (
|
||||
Local MTBDiagnosisTumorSpread = "local"
|
||||
MTBDiagnosisTumorSpreadUnknown MTBDiagnosisTumorSpread = "unknown"
|
||||
Metastasized MTBDiagnosisTumorSpread = "metastasized"
|
||||
TumorFree MTBDiagnosisTumorSpread = "tumor-free"
|
||||
)
|
||||
|
||||
type PurpleCode string
|
||||
|
||||
const (
|
||||
Code0 PurpleCode = "0"
|
||||
Code1 PurpleCode = "1"
|
||||
Code2 PurpleCode = "2"
|
||||
Code3 PurpleCode = "3"
|
||||
Code4 PurpleCode = "4"
|
||||
)
|
||||
|
||||
type SpecimenType string
|
||||
|
||||
const (
|
||||
TumorSpecimen SpecimenType = "TumorSpecimen"
|
||||
)
|
||||
|
||||
type TumorCellContentMethod string
|
||||
|
||||
const (
|
||||
Bioinformatic TumorCellContentMethod = "bioinformatic"
|
||||
Histologic TumorCellContentMethod = "histologic"
|
||||
)
|
||||
|
||||
type NotDoneReasonCode string
|
||||
|
||||
const (
|
||||
ChronicRemission NotDoneReasonCode = "chronic-remission"
|
||||
CodeOther NotDoneReasonCode = "other"
|
||||
CodeUnknown NotDoneReasonCode = "unknown"
|
||||
ContinuedExternally NotDoneReasonCode = "continued-externally"
|
||||
Deterioration NotDoneReasonCode = "deterioration"
|
||||
LostToFu NotDoneReasonCode = "lost-to-fu"
|
||||
MedicalReason NotDoneReasonCode = "medical-reason"
|
||||
NoIndication NotDoneReasonCode = "no-indication"
|
||||
OtherTherapyChosen NotDoneReasonCode = "other-therapy-chosen"
|
||||
PatientDeath NotDoneReasonCode = "patient-death"
|
||||
PatientRefusal NotDoneReasonCode = "patient-refusal"
|
||||
PatientWish NotDoneReasonCode = "patient-wish"
|
||||
PaymentEnded NotDoneReasonCode = "payment-ended"
|
||||
PaymentPending NotDoneReasonCode = "payment-pending"
|
||||
PaymentRefused NotDoneReasonCode = "payment-refused"
|
||||
Progression NotDoneReasonCode = "progression"
|
||||
Toxicity NotDoneReasonCode = "toxicity"
|
||||
)
|
||||
|
||||
type TherapyStatus string
|
||||
|
||||
const (
|
||||
Completed TherapyStatus = "completed"
|
||||
NotDone TherapyStatus = "not-done"
|
||||
OnGoing TherapyStatus = "on-going"
|
||||
Stopped TherapyStatus = "stopped"
|
||||
TherapyStatusUnknown TherapyStatus = "unknown"
|
||||
)
|
||||
|
||||
type Chromosome string
|
||||
|
||||
const (
|
||||
Chr1 Chromosome = "chr1"
|
||||
Chr10 Chromosome = "chr10"
|
||||
Chr11 Chromosome = "chr11"
|
||||
Chr12 Chromosome = "chr12"
|
||||
Chr13 Chromosome = "chr13"
|
||||
Chr14 Chromosome = "chr14"
|
||||
Chr15 Chromosome = "chr15"
|
||||
Chr16 Chromosome = "chr16"
|
||||
Chr17 Chromosome = "chr17"
|
||||
Chr18 Chromosome = "chr18"
|
||||
Chr19 Chromosome = "chr19"
|
||||
Chr2 Chromosome = "chr2"
|
||||
Chr20 Chromosome = "chr20"
|
||||
Chr21 Chromosome = "chr21"
|
||||
Chr22 Chromosome = "chr22"
|
||||
Chr3 Chromosome = "chr3"
|
||||
Chr4 Chromosome = "chr4"
|
||||
Chr5 Chromosome = "chr5"
|
||||
Chr6 Chromosome = "chr6"
|
||||
Chr7 Chromosome = "chr7"
|
||||
Chr8 Chromosome = "chr8"
|
||||
Chr9 Chromosome = "chr9"
|
||||
ChrX Chromosome = "chrX"
|
||||
ChrY Chromosome = "chrY"
|
||||
)
|
||||
|
||||
type CNVType string
|
||||
|
||||
const (
|
||||
HighLevelGain CNVType = "high-level-gain"
|
||||
Loss CNVType = "loss"
|
||||
LowLevelGain CNVType = "low-level-gain"
|
||||
)
|
||||
|
||||
type StrandEnum string
|
||||
|
||||
const (
|
||||
Empty StrandEnum = "+"
|
||||
RNAFusionStrand StrandEnum = "-"
|
||||
)
|
||||
|
||||
type Gender string
|
||||
|
||||
const (
|
||||
Female Gender = "female"
|
||||
GenderOther Gender = "other"
|
||||
GenderUnknown Gender = "unknown"
|
||||
Male Gender = "male"
|
||||
)
|
||||
|
||||
type AddendumCode string
|
||||
|
||||
const (
|
||||
Is AddendumCode = "is"
|
||||
Iv AddendumCode = "iv"
|
||||
R AddendumCode = "R"
|
||||
Z AddendumCode = "Z"
|
||||
)
|
||||
|
||||
type GradingCode string
|
||||
|
||||
const (
|
||||
M1A GradingCode = "m1A"
|
||||
M1B GradingCode = "m1B"
|
||||
M1C GradingCode = "m1C"
|
||||
M2A GradingCode = "m2A"
|
||||
M2B GradingCode = "m2B"
|
||||
M2C GradingCode = "m2C"
|
||||
M3 GradingCode = "m3"
|
||||
M4 GradingCode = "m4"
|
||||
Undefined GradingCode = "undefined"
|
||||
)
|
||||
|
||||
type System string
|
||||
|
||||
const (
|
||||
HTTPSPubmedNcbiNlmNihGov System = "https://pubmed.ncbi.nlm.nih.gov/"
|
||||
)
|
||||
|
||||
type TherapyRecommendationPriority string
|
||||
|
||||
const (
|
||||
Priority1 TherapyRecommendationPriority = "1"
|
||||
Priority2 TherapyRecommendationPriority = "2"
|
||||
Priority3 TherapyRecommendationPriority = "3"
|
||||
Priority4 TherapyRecommendationPriority = "4"
|
||||
)
|
||||
|
||||
type ResponseTherapyType string
|
||||
|
||||
const (
|
||||
MTBMedicationTherapy ResponseTherapyType = "MTBMedicationTherapy"
|
||||
)
|
||||
|
||||
type FluffyCode string
|
||||
|
||||
const (
|
||||
CR FluffyCode = "CR"
|
||||
Mr FluffyCode = "MR"
|
||||
Na FluffyCode = "NA"
|
||||
Nya FluffyCode = "NYA"
|
||||
PD FluffyCode = "PD"
|
||||
PR FluffyCode = "PR"
|
||||
SD FluffyCode = "SD"
|
||||
)
|
||||
|
||||
type TumorSpecimenCollectionLocalization string
|
||||
|
||||
const (
|
||||
Metastasis TumorSpecimenCollectionLocalization = "metastasis"
|
||||
PrimaryTumor TumorSpecimenCollectionLocalization = "primary-tumor"
|
||||
TumorSpecimenCollectionLocalizationUnknown TumorSpecimenCollectionLocalization = "unknown"
|
||||
)
|
||||
|
||||
type TumorSpecimenCollectionMethod string
|
||||
|
||||
const (
|
||||
Biopsy TumorSpecimenCollectionMethod = "biopsy"
|
||||
Cytology TumorSpecimenCollectionMethod = "cytology"
|
||||
Resection TumorSpecimenCollectionMethod = "resection"
|
||||
TumorSpecimenCollectionMethodLiquidBiopsy TumorSpecimenCollectionMethod = "liquid-biopsy"
|
||||
TumorSpecimenCollectionMethodUnknown TumorSpecimenCollectionMethod = "unknown"
|
||||
)
|
||||
|
||||
type TumorSpecimenType string
|
||||
|
||||
const (
|
||||
CryoFrozen TumorSpecimenType = "cryo-frozen"
|
||||
Ffpe TumorSpecimenType = "FFPE"
|
||||
FreshTissue TumorSpecimenType = "fresh-tissue"
|
||||
TumorSpecimenTypeLiquidBiopsy TumorSpecimenType = "liquid-biopsy"
|
||||
TumorSpecimenTypeUnknown TumorSpecimenType = "unknown"
|
||||
)
|
||||
17
mtb_test.go
Normal file
17
mtb_test.go
Normal file
@ -0,0 +1,17 @@
|
||||
package mtb
|
||||
|
||||
import (
|
||||
_ "embed"
|
||||
"testing"
|
||||
)
|
||||
|
||||
//go:embed tests/mv64e-mtb-fake-patient.json
|
||||
var fakeMtbData []byte
|
||||
|
||||
func TestShouldDeserializeJson(t *testing.T) {
|
||||
_, err := UnmarshalMtb(fakeMtbData)
|
||||
|
||||
if err != nil {
|
||||
t.Errorf("Cannot deserialize MTB file")
|
||||
}
|
||||
}
|
||||
1531
tests/mv64e-mtb-fake-patient.json
Normal file
1531
tests/mv64e-mtb-fake-patient.json
Normal file
File diff suppressed because it is too large
Load Diff
Reference in New Issue
Block a user