pcvolkmer/mv64e-mtb-dto-java
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Merge pull request #9 from pcvolkmer/use_lombok

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This commit is contained in:
Paul-Christian Volkmer
2025-06-16 22:08:31 +02:00
committed by GitHub
parent ae535c6ab3 ea4456a9ae
commit c590a3e70e
171 changed files with 2056 additions and 3025 deletions
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6
build.gradle
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@ -12,6 +12,12 @@ repositories {
dependencies {
api 'com.fasterxml.jackson.core:jackson-databind:2.12.7.2'
compileOnly("org.projectlombok:lombok:1.18.38")
annotationProcessor("org.projectlombok:lombok:1.18.38")
testCompileOnly("org.projectlombok:lombok:1.18.38")
testAnnotationProcessor("org.projectlombok:lombok:1.18.38")
testImplementation platform('org.junit:junit-bom:5.10.0')
testImplementation 'org.junit.jupiter:junit-jupiter'
}

14
src/main/java/dev/pcvolkmer/mv64e/mtb/Address.java
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@ -1,12 +1,14 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class Address {
@Getter(onMethod_ = {@JsonProperty("municipalityCode")})
@Setter(onMethod_ = {@JsonProperty("municipalityCode")})
private String municipalityCode;
@JsonProperty("municipalityCode")
public String getMunicipalityCode() { return municipalityCode; }
@JsonProperty("municipalityCode")
public void setMunicipalityCode(String value) { this.municipalityCode = value; }
}

21
src/main/java/dev/pcvolkmer/mv64e/mtb/Age.java
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@ -1,18 +1,17 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class Age {
@Getter(onMethod_ = {@JsonProperty("unit")})
@Setter(onMethod_ = {@JsonProperty("unit")})
private Unit unit;
@Getter(onMethod_ = {@JsonProperty("value")})
@Setter(onMethod_ = {@JsonProperty("value")})
private double value;
@JsonProperty("unit")
public Unit getUnit() { return unit; }
@JsonProperty("unit")
public void setUnit(Unit value) { this.unit = value; }
@JsonProperty("value")
public double getValue() { return value; }
@JsonProperty("value")
public void setValue(double value) { this.value = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/AtcUnregisteredMedicationCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class AtcUnregisteredMedicationCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private String code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private RequestedMedicationSystem system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public String getCode() { return code; }
@JsonProperty("code")
public void setCode(String value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public RequestedMedicationSystem getSystem() { return system; }
@JsonProperty("system")
public void setSystem(RequestedMedicationSystem value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/BaseVariantLocalizationCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class BaseVariantLocalizationCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private BaseVariantLocalizationCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public BaseVariantLocalizationCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(BaseVariantLocalizationCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/BaseVariantLocalizationCodingCode.java
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@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum BaseVariantLocalizationCodingCode {
CODING_REGION, INTERGENIC, INTRONIC, REGULATORY_REGION, SPLICING_REGION;

42
src/main/java/dev/pcvolkmer/mv64e/mtb/Brcaness.java
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@ -1,36 +1,26 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class Brcaness {
@Getter(onMethod_ = {@JsonProperty("confidenceRange")})
@Setter(onMethod_ = {@JsonProperty("confidenceRange")})
private ConfidenceRange confidenceRange;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("specimen")})
@Setter(onMethod_ = {@JsonProperty("specimen")})
private Reference specimen;
@Getter(onMethod_ = {@JsonProperty("value")})
@Setter(onMethod_ = {@JsonProperty("value")})
private double value;
@JsonProperty("confidenceRange")
public ConfidenceRange getConfidenceRange() { return confidenceRange; }
@JsonProperty("confidenceRange")
public void setConfidenceRange(ConfidenceRange value) { this.confidenceRange = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("specimen")
public Reference getSpecimen() { return specimen; }
@JsonProperty("specimen")
public void setSpecimen(Reference value) { this.specimen = value; }
@JsonProperty("value")
public double getValue() { return value; }
@JsonProperty("value")
public void setValue(double value) { this.value = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/CarePlanNoSequencingPerformedReasonCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class CarePlanNoSequencingPerformedReasonCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private NoSequencingPerformedReasonCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public NoSequencingPerformedReasonCode getCode() { return code; }
@JsonProperty("code")
public void setCode(NoSequencingPerformedReasonCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/Chromosome.java
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@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum Chromosome {
CHR1, CHR10, CHR11, CHR12, CHR13, CHR14, CHR15, CHR16, CHR17, CHR18, CHR19, CHR2, CHR20, CHR21, CHR22, CHR3, CHR4, CHR5, CHR6, CHR7, CHR8, CHR9, CHR_X, CHR_Y;

53
src/main/java/dev/pcvolkmer/mv64e/mtb/Claim.java
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@ -1,46 +1,33 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class Claim {
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date issuedOn;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("recommendation")})
@Setter(onMethod_ = {@JsonProperty("recommendation")})
private Reference recommendation;
@Getter(onMethod_ = {@JsonProperty("requestedMedication")})
@Setter(onMethod_ = {@JsonProperty("requestedMedication")})
private List<AtcUnregisteredMedicationCoding> requestedMedication;
@Getter(onMethod_ = {@JsonProperty("stage")})
@Setter(onMethod_ = {@JsonProperty("stage")})
private ClaimStageCoding stage;
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getIssuedOn() { return issuedOn; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setIssuedOn(Date value) { this.issuedOn = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("recommendation")
public Reference getRecommendation() { return recommendation; }
@JsonProperty("recommendation")
public void setRecommendation(Reference value) { this.recommendation = value; }
@JsonProperty("requestedMedication")
public List<AtcUnregisteredMedicationCoding> getRequestedMedication() { return requestedMedication; }
@JsonProperty("requestedMedication")
public void setRequestedMedication(List<AtcUnregisteredMedicationCoding> value) { this.requestedMedication = value; }
@JsonProperty("stage")
public ClaimStageCoding getStage() { return stage; }
@JsonProperty("stage")
public void setStage(ClaimStageCoding value) { this.stage = value; }
}

53
src/main/java/dev/pcvolkmer/mv64e/mtb/ClaimResponse.java
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@ -1,45 +1,32 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class ClaimResponse {
@Getter(onMethod_ = {@JsonProperty("claim")})
@Setter(onMethod_ = {@JsonProperty("claim")})
private Reference claim;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date issuedOn;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("status")})
@Setter(onMethod_ = {@JsonProperty("status")})
private ClaimResponseStatusCoding status;
@Getter(onMethod_ = {@JsonProperty("statusReason")})
@Setter(onMethod_ = {@JsonProperty("statusReason")})
private ClaimResponseStatusReasonCoding statusReason;
@JsonProperty("claim")
public Reference getClaim() { return claim; }
@JsonProperty("claim")
public void setClaim(Reference value) { this.claim = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getIssuedOn() { return issuedOn; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setIssuedOn(Date value) { this.issuedOn = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("status")
public ClaimResponseStatusCoding getStatus() { return status; }
@JsonProperty("status")
public void setStatus(ClaimResponseStatusCoding value) { this.status = value; }
@JsonProperty("statusReason")
public ClaimResponseStatusReasonCoding getStatusReason() { return statusReason; }
@JsonProperty("statusReason")
public void setStatusReason(ClaimResponseStatusReasonCoding value) { this.statusReason = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/ClaimResponseStatusCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class ClaimResponseStatusCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private ClaimResponseStatusCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public ClaimResponseStatusCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(ClaimResponseStatusCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/ClaimResponseStatusCodingCode.java
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@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum ClaimResponseStatusCodingCode {
ACCEPTED, REJECTED, UNKNOWN;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/ClaimResponseStatusReasonCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class ClaimResponseStatusReasonCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private ClaimResponseStatusReasonCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public ClaimResponseStatusReasonCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(ClaimResponseStatusReasonCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/ClaimResponseStatusReasonCodingCode.java
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@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum ClaimResponseStatusReasonCodingCode {
APPROVAL_REVOCATION, FORMAL_REASONS, INCLUSION_IN_STUDY, INSUFFICIENT_EVIDENCE, OTHER, OTHER_THERAPY_RECOMMENDED, STANDARD_THERAPY_NOT_EXHAUSTED, UNKNOWN;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/ClaimStageCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class ClaimStageCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private ClaimStageCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public ClaimStageCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(ClaimStageCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/ClaimStageCodingCode.java
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@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum ClaimStageCodingCode {
FOLLOW_UP_CLAIM, INITIAL_CLAIM, REVOCATION, UNKNOWN;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/ClinVarCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class ClinVarCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private ClinVarCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public ClinVarCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(ClinVarCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/ClinVarCodingCode.java
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@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum ClinVarCodingCode {
CODE_1, CODE_2, CODE_3, CODE_4, CODE_5;

113
src/main/java/dev/pcvolkmer/mv64e/mtb/Cnv.java
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@ -1,97 +1,58 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class Cnv {
@Getter(onMethod_ = {@JsonProperty("chromosome")})
@Setter(onMethod_ = {@JsonProperty("chromosome")})
private Chromosome chromosome;
@Getter(onMethod_ = {@JsonProperty("cnA")})
@Setter(onMethod_ = {@JsonProperty("cnA")})
private Double cnA;
@Getter(onMethod_ = {@JsonProperty("cnB")})
@Setter(onMethod_ = {@JsonProperty("cnB")})
private Double cnB;
@Getter(onMethod_ = {@JsonProperty("copyNumberNeutralLoH")})
@Setter(onMethod_ = {@JsonProperty("copyNumberNeutralLoH")})
private List<Coding> copyNumberNeutralLoH;
@Getter(onMethod_ = {@JsonProperty("endRange")})
@Setter(onMethod_ = {@JsonProperty("endRange")})
private EndRange endRange;
@Getter(onMethod_ = {@JsonProperty("externalIds")})
@Setter(onMethod_ = {@JsonProperty("externalIds")})
private List<VariantExternalId> externalIds;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("localization")})
@Setter(onMethod_ = {@JsonProperty("localization")})
private List<BaseVariantLocalizationCoding> localization;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("relativeCopyNumber")})
@Setter(onMethod_ = {@JsonProperty("relativeCopyNumber")})
private Double relativeCopyNumber;
@Getter(onMethod_ = {@JsonProperty("reportedAffectedGenes")})
@Setter(onMethod_ = {@JsonProperty("reportedAffectedGenes")})
private List<Coding> reportedAffectedGenes;
@Getter(onMethod_ = {@JsonProperty("reportedFocality")})
@Setter(onMethod_ = {@JsonProperty("reportedFocality")})
private String reportedFocality;
@Getter(onMethod_ = {@JsonProperty("startRange")})
@Setter(onMethod_ = {@JsonProperty("startRange")})
private StartRange startRange;
@Getter(onMethod_ = {@JsonProperty("totalCopyNumber")})
@Setter(onMethod_ = {@JsonProperty("totalCopyNumber")})
private Long totalCopyNumber;
@Getter(onMethod_ = {@JsonProperty("type")})
@Setter(onMethod_ = {@JsonProperty("type")})
private CnvCoding type;
@JsonProperty("chromosome")
public Chromosome getChromosome() { return chromosome; }
@JsonProperty("chromosome")
public void setChromosome(Chromosome value) { this.chromosome = value; }
@JsonProperty("cnA")
public Double getCnA() { return cnA; }
@JsonProperty("cnA")
public void setCnA(Double value) { this.cnA = value; }
@JsonProperty("cnB")
public Double getCnB() { return cnB; }
@JsonProperty("cnB")
public void setCnB(Double value) { this.cnB = value; }
@JsonProperty("copyNumberNeutralLoH")
public List<Coding> getCopyNumberNeutralLoH() { return copyNumberNeutralLoH; }
@JsonProperty("copyNumberNeutralLoH")
public void setCopyNumberNeutralLoH(List<Coding> value) { this.copyNumberNeutralLoH = value; }
@JsonProperty("endRange")
public EndRange getEndRange() { return endRange; }
@JsonProperty("endRange")
public void setEndRange(EndRange value) { this.endRange = value; }
@JsonProperty("externalIds")
public List<VariantExternalId> getExternalIds() { return externalIds; }
@JsonProperty("externalIds")
public void setExternalIds(List<VariantExternalId> value) { this.externalIds = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("localization")
public List<BaseVariantLocalizationCoding> getLocalization() { return localization; }
@JsonProperty("localization")
public void setLocalization(List<BaseVariantLocalizationCoding> value) { this.localization = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("relativeCopyNumber")
public Double getRelativeCopyNumber() { return relativeCopyNumber; }
@JsonProperty("relativeCopyNumber")
public void setRelativeCopyNumber(Double value) { this.relativeCopyNumber = value; }
@JsonProperty("reportedAffectedGenes")
public List<Coding> getReportedAffectedGenes() { return reportedAffectedGenes; }
@JsonProperty("reportedAffectedGenes")
public void setReportedAffectedGenes(List<Coding> value) { this.reportedAffectedGenes = value; }
@JsonProperty("reportedFocality")
public String getReportedFocality() { return reportedFocality; }
@JsonProperty("reportedFocality")
public void setReportedFocality(String value) { this.reportedFocality = value; }
@JsonProperty("startRange")
public StartRange getStartRange() { return startRange; }
@JsonProperty("startRange")
public void setStartRange(StartRange value) { this.startRange = value; }
@JsonProperty("totalCopyNumber")
public Long getTotalCopyNumber() { return totalCopyNumber; }
@JsonProperty("totalCopyNumber")
public void setTotalCopyNumber(Long value) { this.totalCopyNumber = value; }
@JsonProperty("type")
public CnvCoding getType() { return type; }
@JsonProperty("type")
public void setType(CnvCoding value) { this.type = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/CnvCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class CnvCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private CnvCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public CnvCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(CnvCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/CnvCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum CnvCodingCode {
HIGH_LEVEL_GAIN, LOSS, LOW_LEVEL_GAIN;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/Coding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class Coding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private String code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public String getCode() { return code; }
@JsonProperty("code")
public void setCode(String value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

29
src/main/java/dev/pcvolkmer/mv64e/mtb/Collection.java
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@ -1,25 +1,22 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class Collection {
@Getter(onMethod_ = {@JsonProperty("date")})
@Setter(onMethod_ = {@JsonProperty("date")})
private Date date;
@Getter(onMethod_ = {@JsonProperty("localization")})
@Setter(onMethod_ = {@JsonProperty("localization")})
private TumorSpecimenCollectionLocalizationCoding localization;
@Getter(onMethod_ = {@JsonProperty("method")})
@Setter(onMethod_ = {@JsonProperty("method")})
private TumorSpecimenCollectionMethodCoding method;
@JsonProperty("date")
public Date getDate() { return date; }
@JsonProperty("date")
public void setDate(Date value) { this.date = value; }
@JsonProperty("localization")
public TumorSpecimenCollectionLocalizationCoding getLocalization() { return localization; }
@JsonProperty("localization")
public void setLocalization(TumorSpecimenCollectionLocalizationCoding value) { this.localization = value; }
@JsonProperty("method")
public TumorSpecimenCollectionMethodCoding getMethod() { return method; }
@JsonProperty("method")
public void setMethod(TumorSpecimenCollectionMethodCoding value) { this.method = value; }
}

28
src/main/java/dev/pcvolkmer/mv64e/mtb/Components.java
View File

@ -1,24 +1,20 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class Components {
@Getter(onMethod_ = {@JsonProperty("loh")})
@Setter(onMethod_ = {@JsonProperty("loh")})
private double loh;
@Getter(onMethod_ = {@JsonProperty("lst")})
@Setter(onMethod_ = {@JsonProperty("lst")})
private double lst;
@Getter(onMethod_ = {@JsonProperty("tai")})
@Setter(onMethod_ = {@JsonProperty("tai")})
private double tai;
@JsonProperty("loh")
public double getLoh() { return loh; }
@JsonProperty("loh")
public void setLoh(double value) { this.loh = value; }
@JsonProperty("lst")
public double getLst() { return lst; }
@JsonProperty("lst")
public void setLst(double value) { this.lst = value; }
@JsonProperty("tai")
public double getTai() { return tai; }
@JsonProperty("tai")
public void setTai(double value) { this.tai = value; }
}

21
src/main/java/dev/pcvolkmer/mv64e/mtb/ConfidenceRange.java
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@ -1,18 +1,17 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class ConfidenceRange {
@Getter(onMethod_ = {@JsonProperty("max")})
@Setter(onMethod_ = {@JsonProperty("max")})
private double max;
@Getter(onMethod_ = {@JsonProperty("min")})
@Setter(onMethod_ = {@JsonProperty("min")})
private double min;
@JsonProperty("max")
public double getMax() { return max; }
@JsonProperty("max")
public void setMax(double value) { this.max = value; }
@JsonProperty("min")
public double getMin() { return min; }
@JsonProperty("min")
public void setMin(double value) { this.min = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/ConsentProvision.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum ConsentProvision {
DENY, PERMIT;

57
src/main/java/dev/pcvolkmer/mv64e/mtb/DnaFusion.java
View File

@ -1,49 +1,34 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class DnaFusion {
@Getter(onMethod_ = {@JsonProperty("externalIds")})
@Setter(onMethod_ = {@JsonProperty("externalIds")})
private List<VariantExternalId> externalIds;
@Getter(onMethod_ = {@JsonProperty("fusionPartner3prime")})
@Setter(onMethod_ = {@JsonProperty("fusionPartner3prime")})
private DnaFusionFusionPartner3Prime fusionPartner3Prime;
@Getter(onMethod_ = {@JsonProperty("fusionPartner5prime")})
@Setter(onMethod_ = {@JsonProperty("fusionPartner5prime")})
private DnaFusionFusionPartner5Prime fusionPartner5Prime;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("localization")})
@Setter(onMethod_ = {@JsonProperty("localization")})
private List<BaseVariantLocalizationCoding> localization;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("reportedNumReads")})
@Setter(onMethod_ = {@JsonProperty("reportedNumReads")})
private long reportedNumReads;
@JsonProperty("externalIds")
public List<VariantExternalId> getExternalIds() { return externalIds; }
@JsonProperty("externalIds")
public void setExternalIds(List<VariantExternalId> value) { this.externalIds = value; }
@JsonProperty("fusionPartner3prime")
public DnaFusionFusionPartner3Prime getFusionPartner3Prime() { return fusionPartner3Prime; }
@JsonProperty("fusionPartner3prime")
public void setFusionPartner3Prime(DnaFusionFusionPartner3Prime value) { this.fusionPartner3Prime = value; }
@JsonProperty("fusionPartner5prime")
public DnaFusionFusionPartner5Prime getFusionPartner5Prime() { return fusionPartner5Prime; }
@JsonProperty("fusionPartner5prime")
public void setFusionPartner5Prime(DnaFusionFusionPartner5Prime value) { this.fusionPartner5Prime = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("localization")
public List<BaseVariantLocalizationCoding> getLocalization() { return localization; }
@JsonProperty("localization")
public void setLocalization(List<BaseVariantLocalizationCoding> value) { this.localization = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("reportedNumReads")
public long getReportedNumReads() { return reportedNumReads; }
@JsonProperty("reportedNumReads")
public void setReportedNumReads(long value) { this.reportedNumReads = value; }
}

28
src/main/java/dev/pcvolkmer/mv64e/mtb/DnaFusionFusionPartner3Prime.java
View File

@ -1,24 +1,20 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class DnaFusionFusionPartner3Prime {
@Getter(onMethod_ = {@JsonProperty("chromosome")})
@Setter(onMethod_ = {@JsonProperty("chromosome")})
private Chromosome chromosome;
@Getter(onMethod_ = {@JsonProperty("gene")})
@Setter(onMethod_ = {@JsonProperty("gene")})
private Coding gene;
@Getter(onMethod_ = {@JsonProperty("position")})
@Setter(onMethod_ = {@JsonProperty("position")})
private double position;
@JsonProperty("chromosome")
public Chromosome getChromosome() { return chromosome; }
@JsonProperty("chromosome")
public void setChromosome(Chromosome value) { this.chromosome = value; }
@JsonProperty("gene")
public Coding getGene() { return gene; }
@JsonProperty("gene")
public void setGene(Coding value) { this.gene = value; }
@JsonProperty("position")
public double getPosition() { return position; }
@JsonProperty("position")
public void setPosition(double value) { this.position = value; }
}

28
src/main/java/dev/pcvolkmer/mv64e/mtb/DnaFusionFusionPartner5Prime.java
View File

@ -1,24 +1,20 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class DnaFusionFusionPartner5Prime {
@Getter(onMethod_ = {@JsonProperty("chromosome")})
@Setter(onMethod_ = {@JsonProperty("chromosome")})
private Chromosome chromosome;
@Getter(onMethod_ = {@JsonProperty("gene")})
@Setter(onMethod_ = {@JsonProperty("gene")})
private Coding gene;
@Getter(onMethod_ = {@JsonProperty("position")})
@Setter(onMethod_ = {@JsonProperty("position")})
private double position;
@JsonProperty("chromosome")
public Chromosome getChromosome() { return chromosome; }
@JsonProperty("chromosome")
public void setChromosome(Chromosome value) { this.chromosome = value; }
@JsonProperty("gene")
public Coding getGene() { return gene; }
@JsonProperty("gene")
public void setGene(Coding value) { this.gene = value; }
@JsonProperty("position")
public double getPosition() { return position; }
@JsonProperty("position")
public void setPosition(double value) { this.position = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/EcogCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class EcogCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private EcogCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public EcogCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(EcogCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/EcogCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum EcogCodingCode {
CODE_0, CODE_1, CODE_2, CODE_3, CODE_4, CODE_5;

21
src/main/java/dev/pcvolkmer/mv64e/mtb/EndRange.java
View File

@ -1,18 +1,17 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class EndRange {
@Getter(onMethod_ = {@JsonProperty("end")})
@Setter(onMethod_ = {@JsonProperty("end")})
private Double end;
@Getter(onMethod_ = {@JsonProperty("start")})
@Setter(onMethod_ = {@JsonProperty("start")})
private double start;
@JsonProperty("end")
public Double getEnd() { return end; }
@JsonProperty("end")
public void setEnd(Double value) { this.end = value; }
@JsonProperty("start")
public double getStart() { return start; }
@JsonProperty("start")
public void setStart(double value) { this.start = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/ExternalIdSystem.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum ExternalIdSystem {
CANCER_SANGER_AC_UK_COSMIC, ENSEMBL_ORG, NCBI_NLM_NIH_GOV_ENTREZ, NCBI_NLM_NIH_GOV_SNP;

39
src/main/java/dev/pcvolkmer/mv64e/mtb/FollowUp.java
View File

@ -1,33 +1,26 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class FollowUp {
@Getter(onMethod_ = {@JsonProperty("date"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("date"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date date;
@Getter(onMethod_ = {@JsonProperty("lastContactDate")})
@Setter(onMethod_ = {@JsonProperty("lastContactDate")})
private Date lastContactDate;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("patientStatus")})
@Setter(onMethod_ = {@JsonProperty("patientStatus")})
private FollowUpPatientStatusCoding patientStatus;
@JsonProperty("date")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getDate() { return date; }
@JsonProperty("date")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setDate(Date value) { this.date = value; }
@JsonProperty("lastContactDate")
public Date getLastContactDate() { return lastContactDate; }
@JsonProperty("lastContactDate")
public void setLastContactDate(Date value) { this.lastContactDate = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("patientStatus")
public FollowUpPatientStatusCoding getPatientStatus() { return patientStatus; }
@JsonProperty("patientStatus")
public void setPatientStatus(FollowUpPatientStatusCoding value) { this.patientStatus = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/FollowUpPatientStatusCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class FollowUpPatientStatusCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private FollowUpPatientStatusCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public FollowUpPatientStatusCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(FollowUpPatientStatusCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/FollowUpPatientStatusCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum FollowUpPatientStatusCodingCode {
LOST_TO_FU;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/GenderCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class GenderCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private GenderCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public GenderCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(GenderCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/GenderCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum GenderCodingCode {
FEMALE, MALE, OTHER, UNKNOWN;

28
src/main/java/dev/pcvolkmer/mv64e/mtb/GeneAlterationReference.java
View File

@ -1,24 +1,20 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class GeneAlterationReference {
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("gene")})
@Setter(onMethod_ = {@JsonProperty("gene")})
private Coding gene;
@Getter(onMethod_ = {@JsonProperty("variant")})
@Setter(onMethod_ = {@JsonProperty("variant")})
private Reference variant;
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("gene")
public Coding getGene() { return gene; }
@JsonProperty("gene")
public void setGene(Coding value) { this.gene = value; }
@JsonProperty("variant")
public Reference getVariant() { return variant; }
@JsonProperty("variant")
public void setVariant(Reference value) { this.variant = value; }
}

39
src/main/java/dev/pcvolkmer/mv64e/mtb/GeneticCounselingRecommendation.java
View File

@ -1,33 +1,26 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class GeneticCounselingRecommendation {
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date issuedOn;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("reason")})
@Setter(onMethod_ = {@JsonProperty("reason")})
private GeneticCounselingRecommendationReasonCoding reason;
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getIssuedOn() { return issuedOn; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setIssuedOn(Date value) { this.issuedOn = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("reason")
public GeneticCounselingRecommendationReasonCoding getReason() { return reason; }
@JsonProperty("reason")
public void setReason(GeneticCounselingRecommendationReasonCoding value) { this.reason = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/GeneticCounselingRecommendationReasonCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class GeneticCounselingRecommendationReasonCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private GeneticCounselingRecommendationReasonCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public GeneticCounselingRecommendationReasonCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(GeneticCounselingRecommendationReasonCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/GeneticCounselingRecommendationReasonCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum GeneticCounselingRecommendationReasonCodingCode {
FAMILY_ANAMNESIS, OTHER, SECONDARY_TUMOR, SELF_ANAMNESIS, UNKNOWN;

15
src/main/java/dev/pcvolkmer/mv64e/mtb/Grading.java
View File

@ -1,13 +1,16 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class Grading {
@Getter(onMethod_ = {@JsonProperty("history")})
@Setter(onMethod_ = {@JsonProperty("history")})
private List<TumorGrading> history;
@JsonProperty("history")
public List<TumorGrading> getHistory() { return history; }
@JsonProperty("history")
public void setHistory(List<TumorGrading> value) { this.history = value; }
}

21
src/main/java/dev/pcvolkmer/mv64e/mtb/HealthInsurance.java
View File

@ -1,18 +1,17 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class HealthInsurance {
@Getter(onMethod_ = {@JsonProperty("reference")})
@Setter(onMethod_ = {@JsonProperty("reference")})
private Reference reference;
@Getter(onMethod_ = {@JsonProperty("type")})
@Setter(onMethod_ = {@JsonProperty("type")})
private HealthInsuranceCoding type;
@JsonProperty("reference")
public Reference getReference() { return reference; }
@JsonProperty("reference")
public void setReference(Reference value) { this.reference = value; }
@JsonProperty("type")
public HealthInsuranceCoding getType() { return type; }
@JsonProperty("type")
public void setType(HealthInsuranceCoding value) { this.type = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/HealthInsuranceCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class HealthInsuranceCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private HealthInsuranceCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public HealthInsuranceCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(HealthInsuranceCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/HealthInsuranceCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum HealthInsuranceCodingCode {
BEI, BG, GKV, GPV, PKV, PPV, SEL, SKT, SOZ, UNK;

39
src/main/java/dev/pcvolkmer/mv64e/mtb/HistologyReevaluationRequest.java
View File

@ -1,33 +1,26 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class HistologyReevaluationRequest {
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date issuedOn;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("specimen")})
@Setter(onMethod_ = {@JsonProperty("specimen")})
private Reference specimen;
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getIssuedOn() { return issuedOn; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setIssuedOn(Date value) { this.issuedOn = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("specimen")
public Reference getSpecimen() { return specimen; }
@JsonProperty("specimen")
public void setSpecimen(Reference value) { this.specimen = value; }
}

46
src/main/java/dev/pcvolkmer/mv64e/mtb/HistologyReport.java
View File

@ -1,39 +1,29 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class HistologyReport {
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date issuedOn;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("results")})
@Setter(onMethod_ = {@JsonProperty("results")})
private HistologyReportResults results;
@Getter(onMethod_ = {@JsonProperty("specimen")})
@Setter(onMethod_ = {@JsonProperty("specimen")})
private Reference specimen;
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getIssuedOn() { return issuedOn; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setIssuedOn(Date value) { this.issuedOn = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("results")
public HistologyReportResults getResults() { return results; }
@JsonProperty("results")
public void setResults(HistologyReportResults value) { this.results = value; }
@JsonProperty("specimen")
public Reference getSpecimen() { return specimen; }
@JsonProperty("specimen")
public void setSpecimen(Reference value) { this.specimen = value; }
}

21
src/main/java/dev/pcvolkmer/mv64e/mtb/HistologyReportResults.java
View File

@ -1,18 +1,17 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class HistologyReportResults {
@Getter(onMethod_ = {@JsonProperty("tumorCellContent")})
@Setter(onMethod_ = {@JsonProperty("tumorCellContent")})
private TumorCellContent tumorCellContent;
@Getter(onMethod_ = {@JsonProperty("tumorMorphology")})
@Setter(onMethod_ = {@JsonProperty("tumorMorphology")})
private TumorMorphology tumorMorphology;
@JsonProperty("tumorCellContent")
public TumorCellContent getTumorCellContent() { return tumorCellContent; }
@JsonProperty("tumorCellContent")
public void setTumorCellContent(TumorCellContent value) { this.tumorCellContent = value; }
@JsonProperty("tumorMorphology")
public TumorMorphology getTumorMorphology() { return tumorMorphology; }
@JsonProperty("tumorMorphology")
public void setTumorMorphology(TumorMorphology value) { this.tumorMorphology = value; }
}

25
src/main/java/dev/pcvolkmer/mv64e/mtb/History.java
View File

@ -1,21 +1,20 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class History {
@Getter(onMethod_ = {@JsonProperty("date"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("date"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date date;
@Getter(onMethod_ = {@JsonProperty("value")})
@Setter(onMethod_ = {@JsonProperty("value")})
private MtbDiagnosisCoding value;
@JsonProperty("date")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getDate() { return date; }
@JsonProperty("date")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setDate(Date value) { this.date = value; }
@JsonProperty("value")
public MtbDiagnosisCoding getValue() { return value; }
@JsonProperty("value")
public void setValue(MtbDiagnosisCoding value) { this.value = value; }
}

49
src/main/java/dev/pcvolkmer/mv64e/mtb/HrdScore.java
View File

@ -1,42 +1,29 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class HrdScore {
@Getter(onMethod_ = {@JsonProperty("components")})
@Setter(onMethod_ = {@JsonProperty("components")})
private Components components;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("interpretation")})
@Setter(onMethod_ = {@JsonProperty("interpretation")})
private HrdScoreInterpretationCoding interpretation;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("specimen")})
@Setter(onMethod_ = {@JsonProperty("specimen")})
private Reference specimen;
@Getter(onMethod_ = {@JsonProperty("value")})
@Setter(onMethod_ = {@JsonProperty("value")})
private double value;
@JsonProperty("components")
public Components getComponents() { return components; }
@JsonProperty("components")
public void setComponents(Components value) { this.components = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("interpretation")
public HrdScoreInterpretationCoding getInterpretation() { return interpretation; }
@JsonProperty("interpretation")
public void setInterpretation(HrdScoreInterpretationCoding value) { this.interpretation = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("specimen")
public Reference getSpecimen() { return specimen; }
@JsonProperty("specimen")
public void setSpecimen(Reference value) { this.specimen = value; }
@JsonProperty("value")
public double getValue() { return value; }
@JsonProperty("value")
public void setValue(double value) { this.value = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/HrdScoreInterpretationCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class HrdScoreInterpretationCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private InterpretationCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public InterpretationCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(InterpretationCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

60
src/main/java/dev/pcvolkmer/mv64e/mtb/IhcReport.java
View File

@ -1,52 +1,36 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class IhcReport {
@Getter(onMethod_ = {@JsonProperty("blockIds")})
@Setter(onMethod_ = {@JsonProperty("blockIds")})
private List<String> blockIds;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date issuedOn;
@Getter(onMethod_ = {@JsonProperty("journalId")})
@Setter(onMethod_ = {@JsonProperty("journalId")})
private String journalId;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("results")})
@Setter(onMethod_ = {@JsonProperty("results")})
private IhcReportResults results;
@Getter(onMethod_ = {@JsonProperty("specimen")})
@Setter(onMethod_ = {@JsonProperty("specimen")})
private Reference specimen;
@JsonProperty("blockIds")
public List<String> getBlockIds() { return blockIds; }
@JsonProperty("blockIds")
public void setBlockIds(List<String> value) { this.blockIds = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getIssuedOn() { return issuedOn; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setIssuedOn(Date value) { this.issuedOn = value; }
@JsonProperty("journalId")
public String getJournalId() { return journalId; }
@JsonProperty("journalId")
public void setJournalId(String value) { this.journalId = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("results")
public IhcReportResults getResults() { return results; }
@JsonProperty("results")
public void setResults(IhcReportResults value) { this.results = value; }
@JsonProperty("specimen")
public Reference getSpecimen() { return specimen; }
@JsonProperty("specimen")
public void setSpecimen(Reference value) { this.specimen = value; }
}

22
src/main/java/dev/pcvolkmer/mv64e/mtb/IhcReportResults.java
View File

@ -1,19 +1,19 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class IhcReportResults {
@Getter(onMethod_ = {@JsonProperty("msiMmr")})
@Setter(onMethod_ = {@JsonProperty("msiMmr")})
private List<MSIMmr> msiMmr;
@Getter(onMethod_ = {@JsonProperty("proteinExpression")})
@Setter(onMethod_ = {@JsonProperty("proteinExpression")})
private List<ProteinExpression> proteinExpression;
@JsonProperty("msiMmr")
public List<MSIMmr> getMsiMmr() { return msiMmr; }
@JsonProperty("msiMmr")
public void setMsiMmr(List<MSIMmr> value) { this.msiMmr = value; }
@JsonProperty("proteinExpression")
public List<ProteinExpression> getProteinExpression() { return proteinExpression; }
@JsonProperty("proteinExpression")
public void setProteinExpression(List<ProteinExpression> value) { this.proteinExpression = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/InterpretationCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum InterpretationCodingCode {
HIGH, INTERMEDIATE, LOW;

29
src/main/java/dev/pcvolkmer/mv64e/mtb/LevelOfEvidence.java
View File

@ -1,25 +1,22 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class LevelOfEvidence {
@Getter(onMethod_ = {@JsonProperty("addendums")})
@Setter(onMethod_ = {@JsonProperty("addendums")})
private List<LevelOfEvidenceAddendumCoding> addendums;
@Getter(onMethod_ = {@JsonProperty("grading")})
@Setter(onMethod_ = {@JsonProperty("grading")})
private LevelOfEvidenceGradingCoding grading;
@Getter(onMethod_ = {@JsonProperty("publications")})
@Setter(onMethod_ = {@JsonProperty("publications")})
private List<PublicationReference> publications;
@JsonProperty("addendums")
public List<LevelOfEvidenceAddendumCoding> getAddendums() { return addendums; }
@JsonProperty("addendums")
public void setAddendums(List<LevelOfEvidenceAddendumCoding> value) { this.addendums = value; }
@JsonProperty("grading")
public LevelOfEvidenceGradingCoding getGrading() { return grading; }
@JsonProperty("grading")
public void setGrading(LevelOfEvidenceGradingCoding value) { this.grading = value; }
@JsonProperty("publications")
public List<PublicationReference> getPublications() { return publications; }
@JsonProperty("publications")
public void setPublications(List<PublicationReference> value) { this.publications = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/LevelOfEvidenceAddendumCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class LevelOfEvidenceAddendumCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private LevelOfEvidenceAddendumCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public LevelOfEvidenceAddendumCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(LevelOfEvidenceAddendumCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/LevelOfEvidenceAddendumCodingCode.java
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@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum LevelOfEvidenceAddendumCodingCode {
IS, IV, R, Z;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/LevelOfEvidenceGradingCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class LevelOfEvidenceGradingCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private LevelOfEvidenceGradingCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public LevelOfEvidenceGradingCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(LevelOfEvidenceGradingCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/LevelOfEvidenceGradingCodingCode.java
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@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum LevelOfEvidenceGradingCodingCode {
M1A, M1B, M1C, M2A, M2B, M2C, M3, M4, UNDEFINED;

56
src/main/java/dev/pcvolkmer/mv64e/mtb/MSIMmr.java
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@ -1,48 +1,32 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MSIMmr {
@Getter(onMethod_ = {@JsonProperty("icScore")})
@Setter(onMethod_ = {@JsonProperty("icScore")})
private ProteinExpressionIcScoreCoding icScore;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("protein")})
@Setter(onMethod_ = {@JsonProperty("protein")})
private Coding protein;
@Getter(onMethod_ = {@JsonProperty("tcScore")})
@Setter(onMethod_ = {@JsonProperty("tcScore")})
private ProteinExpressionTcScoreCoding tcScore;
@Getter(onMethod_ = {@JsonProperty("tpsScore")})
@Setter(onMethod_ = {@JsonProperty("tpsScore")})
private Long tpsScore;
@Getter(onMethod_ = {@JsonProperty("value")})
@Setter(onMethod_ = {@JsonProperty("value")})
private ProteinExpressionResultCoding value;
@JsonProperty("icScore")
public ProteinExpressionIcScoreCoding getIcScore() { return icScore; }
@JsonProperty("icScore")
public void setIcScore(ProteinExpressionIcScoreCoding value) { this.icScore = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("protein")
public Coding getProtein() { return protein; }
@JsonProperty("protein")
public void setProtein(Coding value) { this.protein = value; }
@JsonProperty("tcScore")
public ProteinExpressionTcScoreCoding getTcScore() { return tcScore; }
@JsonProperty("tcScore")
public void setTcScore(ProteinExpressionTcScoreCoding value) { this.tcScore = value; }
@JsonProperty("tpsScore")
public Long getTpsScore() { return tpsScore; }
@JsonProperty("tpsScore")
public void setTpsScore(Long value) { this.tpsScore = value; }
@JsonProperty("value")
public ProteinExpressionResultCoding getValue() { return value; }
@JsonProperty("value")
public void setValue(ProteinExpressionResultCoding value) { this.value = value; }
}

29
src/main/java/dev/pcvolkmer/mv64e/mtb/ModelProjectConsent.java
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@ -1,26 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class ModelProjectConsent {
@Getter(onMethod_ = {@JsonProperty("date")})
@Setter(onMethod_ = {@JsonProperty("date")})
private Date date;
@Getter(onMethod_ = {@JsonProperty("provisions")})
@Setter(onMethod_ = {@JsonProperty("provisions")})
private List<Provision> provisions;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("date")
public Date getDate() { return date; }
@JsonProperty("date")
public void setDate(Date value) { this.date = value; }
@JsonProperty("provisions")
public List<Provision> getProvisions() { return provisions; }
@JsonProperty("provisions")
public void setProvisions(List<Provision> value) { this.provisions = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/ModelProjectConsentPurpose.java
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@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum ModelProjectConsentPurpose {
CASE_IDENTIFICATION, REIDENTIFICATION, SEQUENCING;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MolecularDiagnosticReportCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MolecularDiagnosticReportCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MolecularDiagnosticReportCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MolecularDiagnosticReportCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MolecularDiagnosticReportCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MolecularDiagnosticReportCodingCode.java
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@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MolecularDiagnosticReportCodingCode {
ARRAY, EXOME, FISH, FUSION_PANEL, GENE_PANEL, GENOME_LONG_READ, GENOME_SHORT_READ, KARYOTYPING, OTHER, PANEL, PCR, SINGLE;

134
src/main/java/dev/pcvolkmer/mv64e/mtb/Mtb.java
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@ -1,115 +1,67 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class Mtb {
@Getter(onMethod_ = {@JsonProperty("carePlans")})
@Setter(onMethod_ = {@JsonProperty("carePlans")})
private List<MtbCarePlan> carePlans;
@Getter(onMethod_ = {@JsonProperty("claimResponses")})
@Setter(onMethod_ = {@JsonProperty("claimResponses")})
private List<ClaimResponse> claimResponses;
@Getter(onMethod_ = {@JsonProperty("claims")})
@Setter(onMethod_ = {@JsonProperty("claims")})
private List<Claim> claims;
@Getter(onMethod_ = {@JsonProperty("diagnoses")})
@Setter(onMethod_ = {@JsonProperty("diagnoses")})
private List<MtbDiagnosis> diagnoses;
@Getter(onMethod_ = {@JsonProperty("episodesOfCare")})
@Setter(onMethod_ = {@JsonProperty("episodesOfCare")})
private List<MtbEpisodeOfCare> episodesOfCare;
@Getter(onMethod_ = {@JsonProperty("followUps")})
@Setter(onMethod_ = {@JsonProperty("followUps")})
private List<FollowUp> followUps;
@Getter(onMethod_ = {@JsonProperty("guidelineProcedures")})
@Setter(onMethod_ = {@JsonProperty("guidelineProcedures")})
private List<OncoProcedure> guidelineProcedures;
@Getter(onMethod_ = {@JsonProperty("guidelineTherapies")})
@Setter(onMethod_ = {@JsonProperty("guidelineTherapies")})
private List<MtbSystemicTherapy> guidelineTherapies;
@Getter(onMethod_ = {@JsonProperty("histologyReports")})
@Setter(onMethod_ = {@JsonProperty("histologyReports")})
private List<HistologyReport> histologyReports;
@Getter(onMethod_ = {@JsonProperty("ihcReports")})
@Setter(onMethod_ = {@JsonProperty("ihcReports")})
private List<IhcReport> ihcReports;
@Getter(onMethod_ = {@JsonProperty("metadata")})
@Setter(onMethod_ = {@JsonProperty("metadata")})
private MvhMetadata metadata;
@Getter(onMethod_ = {@JsonProperty("ngsReports")})
@Setter(onMethod_ = {@JsonProperty("ngsReports")})
private List<SomaticNgsReport> ngsReports;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Patient patient;
@Getter(onMethod_ = {@JsonProperty("performanceStatus")})
@Setter(onMethod_ = {@JsonProperty("performanceStatus")})
private List<PerformanceStatus> performanceStatus;
@Getter(onMethod_ = {@JsonProperty("priorDiagnosticReports")})
@Setter(onMethod_ = {@JsonProperty("priorDiagnosticReports")})
private List<PriorDiagnosticReport> priorDiagnosticReports;
@Getter(onMethod_ = {@JsonProperty("responses")})
@Setter(onMethod_ = {@JsonProperty("responses")})
private List<Response> responses;
@Getter(onMethod_ = {@JsonProperty("specimens")})
@Setter(onMethod_ = {@JsonProperty("specimens")})
private List<TumorSpecimen> specimens;
@Getter(onMethod_ = {@JsonProperty("systemicTherapies")})
@Setter(onMethod_ = {@JsonProperty("systemicTherapies")})
private List<SystemicTherapy> systemicTherapies;
@JsonProperty("carePlans")
public List<MtbCarePlan> getCarePlans() { return carePlans; }
@JsonProperty("carePlans")
public void setCarePlans(List<MtbCarePlan> value) { this.carePlans = value; }
@JsonProperty("claimResponses")
public List<ClaimResponse> getClaimResponses() { return claimResponses; }
@JsonProperty("claimResponses")
public void setClaimResponses(List<ClaimResponse> value) { this.claimResponses = value; }
@JsonProperty("claims")
public List<Claim> getClaims() { return claims; }
@JsonProperty("claims")
public void setClaims(List<Claim> value) { this.claims = value; }
@JsonProperty("diagnoses")
public List<MtbDiagnosis> getDiagnoses() { return diagnoses; }
@JsonProperty("diagnoses")
public void setDiagnoses(List<MtbDiagnosis> value) { this.diagnoses = value; }
@JsonProperty("episodesOfCare")
public List<MtbEpisodeOfCare> getEpisodesOfCare() { return episodesOfCare; }
@JsonProperty("episodesOfCare")
public void setEpisodesOfCare(List<MtbEpisodeOfCare> value) { this.episodesOfCare = value; }
@JsonProperty("followUps")
public List<FollowUp> getFollowUps() { return followUps; }
@JsonProperty("followUps")
public void setFollowUps(List<FollowUp> value) { this.followUps = value; }
@JsonProperty("guidelineProcedures")
public List<OncoProcedure> getGuidelineProcedures() { return guidelineProcedures; }
@JsonProperty("guidelineProcedures")
public void setGuidelineProcedures(List<OncoProcedure> value) { this.guidelineProcedures = value; }
@JsonProperty("guidelineTherapies")
public List<MtbSystemicTherapy> getGuidelineTherapies() { return guidelineTherapies; }
@JsonProperty("guidelineTherapies")
public void setGuidelineTherapies(List<MtbSystemicTherapy> value) { this.guidelineTherapies = value; }
@JsonProperty("histologyReports")
public List<HistologyReport> getHistologyReports() { return histologyReports; }
@JsonProperty("histologyReports")
public void setHistologyReports(List<HistologyReport> value) { this.histologyReports = value; }
@JsonProperty("ihcReports")
public List<IhcReport> getIhcReports() { return ihcReports; }
@JsonProperty("ihcReports")
public void setIhcReports(List<IhcReport> value) { this.ihcReports = value; }
@JsonProperty("metadata")
public MvhMetadata getMetadata() { return metadata; }
@JsonProperty("metadata")
public void setMetadata(MvhMetadata value) { this.metadata = value; }
@JsonProperty("ngsReports")
public List<SomaticNgsReport> getNgsReports() { return ngsReports; }
@JsonProperty("ngsReports")
public void setNgsReports(List<SomaticNgsReport> value) { this.ngsReports = value; }
@JsonProperty("patient")
public Patient getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Patient value) { this.patient = value; }
@JsonProperty("performanceStatus")
public List<PerformanceStatus> getPerformanceStatus() { return performanceStatus; }
@JsonProperty("performanceStatus")
public void setPerformanceStatus(List<PerformanceStatus> value) { this.performanceStatus = value; }
@JsonProperty("priorDiagnosticReports")
public List<PriorDiagnosticReport> getPriorDiagnosticReports() { return priorDiagnosticReports; }
@JsonProperty("priorDiagnosticReports")
public void setPriorDiagnosticReports(List<PriorDiagnosticReport> value) { this.priorDiagnosticReports = value; }
@JsonProperty("responses")
public List<Response> getResponses() { return responses; }
@JsonProperty("responses")
public void setResponses(List<Response> value) { this.responses = value; }
@JsonProperty("specimens")
public List<TumorSpecimen> getSpecimens() { return specimens; }
@JsonProperty("specimens")
public void setSpecimens(List<TumorSpecimen> value) { this.specimens = value; }
@JsonProperty("systemicTherapies")
public List<SystemicTherapy> getSystemicTherapies() { return systemicTherapies; }
@JsonProperty("systemicTherapies")
public void setSystemicTherapies(List<SystemicTherapy> value) { this.systemicTherapies = value; }
}

102
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbCarePlan.java
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@ -1,88 +1,54 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbCarePlan {
@Getter(onMethod_ = {@JsonProperty("geneticCounselingRecommendation")})
@Setter(onMethod_ = {@JsonProperty("geneticCounselingRecommendation")})
private GeneticCounselingRecommendation geneticCounselingRecommendation;
@Getter(onMethod_ = {@JsonProperty("histologyReevaluationRequests")})
@Setter(onMethod_ = {@JsonProperty("histologyReevaluationRequests")})
private List<HistologyReevaluationRequest> histologyReevaluationRequests;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date issuedOn;
@Getter(onMethod_ = {@JsonProperty("medicationRecommendations")})
@Setter(onMethod_ = {@JsonProperty("medicationRecommendations")})
private List<MtbMedicationRecommendation> medicationRecommendations;
@Getter(onMethod_ = {@JsonProperty("noSequencingPerformedReason")})
@Setter(onMethod_ = {@JsonProperty("noSequencingPerformedReason")})
private CarePlanNoSequencingPerformedReasonCoding noSequencingPerformedReason;
@Getter(onMethod_ = {@JsonProperty("notes")})
@Setter(onMethod_ = {@JsonProperty("notes")})
private List<String> notes;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("procedureRecommendations")})
@Setter(onMethod_ = {@JsonProperty("procedureRecommendations")})
private List<ProcedureRecommendation> procedureRecommendations;
@Getter(onMethod_ = {@JsonProperty("reason")})
@Setter(onMethod_ = {@JsonProperty("reason")})
private Reference reason;
@Getter(onMethod_ = {@JsonProperty("rebiopsyRequests")})
@Setter(onMethod_ = {@JsonProperty("rebiopsyRequests")})
private List<RebiopsyRequest> rebiopsyRequests;
@Getter(onMethod_ = {@JsonProperty("recommendationsMissingReason")})
@Setter(onMethod_ = {@JsonProperty("recommendationsMissingReason")})
private MtbCarePlanRecommendationsMissingReasonCoding recommendationsMissingReason;
@Getter(onMethod_ = {@JsonProperty("studyEnrollmentRecommendations")})
@Setter(onMethod_ = {@JsonProperty("studyEnrollmentRecommendations")})
private List<MtbStudyEnrollmentRecommendation> studyEnrollmentRecommendations;
@JsonProperty("geneticCounselingRecommendation")
public GeneticCounselingRecommendation getGeneticCounselingRecommendation() { return geneticCounselingRecommendation; }
@JsonProperty("geneticCounselingRecommendation")
public void setGeneticCounselingRecommendation(GeneticCounselingRecommendation value) { this.geneticCounselingRecommendation = value; }
@JsonProperty("histologyReevaluationRequests")
public List<HistologyReevaluationRequest> getHistologyReevaluationRequests() { return histologyReevaluationRequests; }
@JsonProperty("histologyReevaluationRequests")
public void setHistologyReevaluationRequests(List<HistologyReevaluationRequest> value) { this.histologyReevaluationRequests = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getIssuedOn() { return issuedOn; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setIssuedOn(Date value) { this.issuedOn = value; }
@JsonProperty("medicationRecommendations")
public List<MtbMedicationRecommendation> getMedicationRecommendations() { return medicationRecommendations; }
@JsonProperty("medicationRecommendations")
public void setMedicationRecommendations(List<MtbMedicationRecommendation> value) { this.medicationRecommendations = value; }
@JsonProperty("noSequencingPerformedReason")
public CarePlanNoSequencingPerformedReasonCoding getNoSequencingPerformedReason() { return noSequencingPerformedReason; }
@JsonProperty("noSequencingPerformedReason")
public void setNoSequencingPerformedReason(CarePlanNoSequencingPerformedReasonCoding value) { this.noSequencingPerformedReason = value; }
@JsonProperty("notes")
public List<String> getNotes() { return notes; }
@JsonProperty("notes")
public void setNotes(List<String> value) { this.notes = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("procedureRecommendations")
public List<ProcedureRecommendation> getProcedureRecommendations() { return procedureRecommendations; }
@JsonProperty("procedureRecommendations")
public void setProcedureRecommendations(List<ProcedureRecommendation> value) { this.procedureRecommendations = value; }
@JsonProperty("reason")
public Reference getReason() { return reason; }
@JsonProperty("reason")
public void setReason(Reference value) { this.reason = value; }
@JsonProperty("rebiopsyRequests")
public List<RebiopsyRequest> getRebiopsyRequests() { return rebiopsyRequests; }
@JsonProperty("rebiopsyRequests")
public void setRebiopsyRequests(List<RebiopsyRequest> value) { this.rebiopsyRequests = value; }
@JsonProperty("recommendationsMissingReason")
public MtbCarePlanRecommendationsMissingReasonCoding getRecommendationsMissingReason() { return recommendationsMissingReason; }
@JsonProperty("recommendationsMissingReason")
public void setRecommendationsMissingReason(MtbCarePlanRecommendationsMissingReasonCoding value) { this.recommendationsMissingReason = value; }
@JsonProperty("studyEnrollmentRecommendations")
public List<MtbStudyEnrollmentRecommendation> getStudyEnrollmentRecommendations() { return studyEnrollmentRecommendations; }
@JsonProperty("studyEnrollmentRecommendations")
public void setStudyEnrollmentRecommendations(List<MtbStudyEnrollmentRecommendation> value) { this.studyEnrollmentRecommendations = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbCarePlanRecommendationsMissingReasonCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbCarePlanRecommendationsMissingReasonCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MtbCarePlanRecommendationsMissingReasonCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MtbCarePlanRecommendationsMissingReasonCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MtbCarePlanRecommendationsMissingReasonCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbCarePlanRecommendationsMissingReasonCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MtbCarePlanRecommendationsMissingReasonCodingCode {
NO_TARGET;

95
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbDiagnosis.java
View File

@ -1,82 +1,51 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbDiagnosis {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private Coding code;
@Getter(onMethod_ = {@JsonProperty("germlineCodes")})
@Setter(onMethod_ = {@JsonProperty("germlineCodes")})
private List<Coding> germlineCodes;
@Getter(onMethod_ = {@JsonProperty("grading")})
@Setter(onMethod_ = {@JsonProperty("grading")})
private Grading grading;
@Getter(onMethod_ = {@JsonProperty("guidelineTreatmentStatus")})
@Setter(onMethod_ = {@JsonProperty("guidelineTreatmentStatus")})
private MtbDiagnosisGuidelineTreatmentStatusCoding guidelineTreatmentStatus;
@Getter(onMethod_ = {@JsonProperty("histology")})
@Setter(onMethod_ = {@JsonProperty("histology")})
private List<Reference> histology;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("notes")})
@Setter(onMethod_ = {@JsonProperty("notes")})
private List<String> notes;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("recordedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("recordedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date recordedOn;
@Getter(onMethod_ = {@JsonProperty("staging")})
@Setter(onMethod_ = {@JsonProperty("staging")})
private Staging staging;
@Getter(onMethod_ = {@JsonProperty("topography")})
@Setter(onMethod_ = {@JsonProperty("topography")})
private Coding topography;
@Getter(onMethod_ = {@JsonProperty("type")})
@Setter(onMethod_ = {@JsonProperty("type")})
private Type type;
@JsonProperty("code")
public Coding getCode() { return code; }
@JsonProperty("code")
public void setCode(Coding value) { this.code = value; }
@JsonProperty("germlineCodes")
public List<Coding> getGermlineCodes() { return germlineCodes; }
@JsonProperty("germlineCodes")
public void setGermlineCodes(List<Coding> value) { this.germlineCodes = value; }
@JsonProperty("grading")
public Grading getGrading() { return grading; }
@JsonProperty("grading")
public void setGrading(Grading value) { this.grading = value; }
@JsonProperty("guidelineTreatmentStatus")
public MtbDiagnosisGuidelineTreatmentStatusCoding getGuidelineTreatmentStatus() { return guidelineTreatmentStatus; }
@JsonProperty("guidelineTreatmentStatus")
public void setGuidelineTreatmentStatus(MtbDiagnosisGuidelineTreatmentStatusCoding value) { this.guidelineTreatmentStatus = value; }
@JsonProperty("histology")
public List<Reference> getHistology() { return histology; }
@JsonProperty("histology")
public void setHistology(List<Reference> value) { this.histology = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("notes")
public List<String> getNotes() { return notes; }
@JsonProperty("notes")
public void setNotes(List<String> value) { this.notes = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("recordedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getRecordedOn() { return recordedOn; }
@JsonProperty("recordedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setRecordedOn(Date value) { this.recordedOn = value; }
@JsonProperty("staging")
public Staging getStaging() { return staging; }
@JsonProperty("staging")
public void setStaging(Staging value) { this.staging = value; }
@JsonProperty("topography")
public Coding getTopography() { return topography; }
@JsonProperty("topography")
public void setTopography(Coding value) { this.topography = value; }
@JsonProperty("type")
public Type getType() { return type; }
@JsonProperty("type")
public void setType(Type value) { this.type = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbDiagnosisCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbDiagnosisCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private ValueCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public ValueCode getCode() { return code; }
@JsonProperty("code")
public void setCode(ValueCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbDiagnosisGuidelineTreatmentStatusCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbDiagnosisGuidelineTreatmentStatusCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MtbDiagnosisGuidelineTreatmentStatusCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MtbDiagnosisGuidelineTreatmentStatusCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MtbDiagnosisGuidelineTreatmentStatusCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbDiagnosisGuidelineTreatmentStatusCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MtbDiagnosisGuidelineTreatmentStatusCodingCode {
EXHAUSTED, IMPOSSIBLE, NON_EXHAUSTED, NO_GUIDELINES_AVAILABLE, UNKNOWN;

36
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbEpisodeOfCare.java
View File

@ -1,31 +1,25 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbEpisodeOfCare {
@Getter(onMethod_ = {@JsonProperty("diagnoses")})
@Setter(onMethod_ = {@JsonProperty("diagnoses")})
private List<Reference> diagnoses;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("period")})
@Setter(onMethod_ = {@JsonProperty("period")})
private PeriodDate period;
@JsonProperty("diagnoses")
public List<Reference> getDiagnoses() { return diagnoses; }
@JsonProperty("diagnoses")
public void setDiagnoses(List<Reference> value) { this.diagnoses = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("period")
public PeriodDate getPeriod() { return period; }
@JsonProperty("period")
public void setPeriod(PeriodDate value) { this.period = value; }
}

81
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbMedicationRecommendation.java
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@ -1,70 +1,45 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbMedicationRecommendation {
@Getter(onMethod_ = {@JsonProperty("category")})
@Setter(onMethod_ = {@JsonProperty("category")})
private MtbMedicationRecommendationCategoryCoding category;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date issuedOn;
@Getter(onMethod_ = {@JsonProperty("levelOfEvidence")})
@Setter(onMethod_ = {@JsonProperty("levelOfEvidence")})
private LevelOfEvidence levelOfEvidence;
@Getter(onMethod_ = {@JsonProperty("medication")})
@Setter(onMethod_ = {@JsonProperty("medication")})
private List<AtcUnregisteredMedicationCoding> medication;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("priority")})
@Setter(onMethod_ = {@JsonProperty("priority")})
private RecommendationPriorityCoding priority;
@Getter(onMethod_ = {@JsonProperty("reason")})
@Setter(onMethod_ = {@JsonProperty("reason")})
private Reference reason;
@Getter(onMethod_ = {@JsonProperty("supportingVariants")})
@Setter(onMethod_ = {@JsonProperty("supportingVariants")})
private List<GeneAlterationReference> supportingVariants;
@Getter(onMethod_ = {@JsonProperty("useType")})
@Setter(onMethod_ = {@JsonProperty("useType")})
private MtbMedicationRecommendationUseTypeCoding useType;
@JsonProperty("category")
public MtbMedicationRecommendationCategoryCoding getCategory() { return category; }
@JsonProperty("category")
public void setCategory(MtbMedicationRecommendationCategoryCoding value) { this.category = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getIssuedOn() { return issuedOn; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setIssuedOn(Date value) { this.issuedOn = value; }
@JsonProperty("levelOfEvidence")
public LevelOfEvidence getLevelOfEvidence() { return levelOfEvidence; }
@JsonProperty("levelOfEvidence")
public void setLevelOfEvidence(LevelOfEvidence value) { this.levelOfEvidence = value; }
@JsonProperty("medication")
public List<AtcUnregisteredMedicationCoding> getMedication() { return medication; }
@JsonProperty("medication")
public void setMedication(List<AtcUnregisteredMedicationCoding> value) { this.medication = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("priority")
public RecommendationPriorityCoding getPriority() { return priority; }
@JsonProperty("priority")
public void setPriority(RecommendationPriorityCoding value) { this.priority = value; }
@JsonProperty("reason")
public Reference getReason() { return reason; }
@JsonProperty("reason")
public void setReason(Reference value) { this.reason = value; }
@JsonProperty("supportingVariants")
public List<GeneAlterationReference> getSupportingVariants() { return supportingVariants; }
@JsonProperty("supportingVariants")
public void setSupportingVariants(List<GeneAlterationReference> value) { this.supportingVariants = value; }
@JsonProperty("useType")
public MtbMedicationRecommendationUseTypeCoding getUseType() { return useType; }
@JsonProperty("useType")
public void setUseType(MtbMedicationRecommendationUseTypeCoding value) { this.useType = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbMedicationRecommendationCategoryCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbMedicationRecommendationCategoryCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MtbMedicationRecommendationCategoryCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MtbMedicationRecommendationCategoryCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MtbMedicationRecommendationCategoryCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbMedicationRecommendationCategoryCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MtbMedicationRecommendationCategoryCodingCode {
CH, HO, IM, SO, SZ, ZS;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbMedicationRecommendationUseTypeCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbMedicationRecommendationUseTypeCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MtbMedicationRecommendationUseTypeCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MtbMedicationRecommendationUseTypeCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MtbMedicationRecommendationUseTypeCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbMedicationRecommendationUseTypeCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MtbMedicationRecommendationUseTypeCodingCode {
COMPASSIONATE, IN_LABEL, OFF_LABEL, SEC_PREVENTIVE, UNKNOWN;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbProcedureRecommendationCategoryCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbProcedureRecommendationCategoryCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MtbProcedureRecommendationCategoryCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MtbProcedureRecommendationCategoryCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MtbProcedureRecommendationCategoryCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbProcedureRecommendationCategoryCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MtbProcedureRecommendationCategoryCodingCode {
AS, OP, SO, ST, WS, WW;

74
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbStudyEnrollmentRecommendation.java
View File

@ -1,64 +1,42 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbStudyEnrollmentRecommendation {
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("issuedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date issuedOn;
@Getter(onMethod_ = {@JsonProperty("levelOfEvidence")})
@Setter(onMethod_ = {@JsonProperty("levelOfEvidence")})
private LevelOfEvidence levelOfEvidence;
@Getter(onMethod_ = {@JsonProperty("medication")})
@Setter(onMethod_ = {@JsonProperty("medication")})
private List<AtcUnregisteredMedicationCoding> medication;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("priority")})
@Setter(onMethod_ = {@JsonProperty("priority")})
private RecommendationPriorityCoding priority;
@Getter(onMethod_ = {@JsonProperty("reason")})
@Setter(onMethod_ = {@JsonProperty("reason")})
private Reference reason;
@Getter(onMethod_ = {@JsonProperty("study")})
@Setter(onMethod_ = {@JsonProperty("study")})
private List<StudyReference> study;
@Getter(onMethod_ = {@JsonProperty("supportingVariants")})
@Setter(onMethod_ = {@JsonProperty("supportingVariants")})
private List<GeneAlterationReference> supportingVariants;
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getIssuedOn() { return issuedOn; }
@JsonProperty("issuedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setIssuedOn(Date value) { this.issuedOn = value; }
@JsonProperty("levelOfEvidence")
public LevelOfEvidence getLevelOfEvidence() { return levelOfEvidence; }
@JsonProperty("levelOfEvidence")
public void setLevelOfEvidence(LevelOfEvidence value) { this.levelOfEvidence = value; }
@JsonProperty("medication")
public List<AtcUnregisteredMedicationCoding> getMedication() { return medication; }
@JsonProperty("medication")
public void setMedication(List<AtcUnregisteredMedicationCoding> value) { this.medication = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("priority")
public RecommendationPriorityCoding getPriority() { return priority; }
@JsonProperty("priority")
public void setPriority(RecommendationPriorityCoding value) { this.priority = value; }
@JsonProperty("reason")
public Reference getReason() { return reason; }
@JsonProperty("reason")
public void setReason(Reference value) { this.reason = value; }
@JsonProperty("study")
public List<StudyReference> getStudy() { return study; }
@JsonProperty("study")
public void setStudy(List<StudyReference> value) { this.study = value; }
@JsonProperty("supportingVariants")
public List<GeneAlterationReference> getSupportingVariants() { return supportingVariants; }
@JsonProperty("supportingVariants")
public void setSupportingVariants(List<GeneAlterationReference> value) { this.supportingVariants = value; }
}

116
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbSystemicTherapy.java
View File

@ -1,100 +1,60 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonFormat;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.Date;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbSystemicTherapy {
@Getter(onMethod_ = {@JsonProperty("basedOn")})
@Setter(onMethod_ = {@JsonProperty("basedOn")})
private Reference basedOn;
@Getter(onMethod_ = {@JsonProperty("category")})
@Setter(onMethod_ = {@JsonProperty("category")})
private MtbSystemicTherapyCategoryCoding category;
@Getter(onMethod_ = {@JsonProperty("dosage")})
@Setter(onMethod_ = {@JsonProperty("dosage")})
private MtbSystemicTherapyDosageDensityCoding dosage;
@Getter(onMethod_ = {@JsonProperty("id")})
@Setter(onMethod_ = {@JsonProperty("id")})
private String id;
@Getter(onMethod_ = {@JsonProperty("intent")})
@Setter(onMethod_ = {@JsonProperty("intent")})
private MtbTherapyIntentCoding intent;
@Getter(onMethod_ = {@JsonProperty("medication")})
@Setter(onMethod_ = {@JsonProperty("medication")})
private List<AtcUnregisteredMedicationCoding> medication;
@Getter(onMethod_ = {@JsonProperty("notes")})
@Setter(onMethod_ = {@JsonProperty("notes")})
private List<String> notes;
@Getter(onMethod_ = {@JsonProperty("patient")})
@Setter(onMethod_ = {@JsonProperty("patient")})
private Reference patient;
@Getter(onMethod_ = {@JsonProperty("period")})
@Setter(onMethod_ = {@JsonProperty("period")})
private PeriodDate period;
@Getter(onMethod_ = {@JsonProperty("reason")})
@Setter(onMethod_ = {@JsonProperty("reason")})
private Reference reason;
@Getter(onMethod_ = {@JsonProperty("recommendationFulfillmentStatus")})
@Setter(onMethod_ = {@JsonProperty("recommendationFulfillmentStatus")})
private MtbSystemicTherapyRecommendationFulfillmentStatusCoding recommendationFulfillmentStatus;
@Getter(onMethod_ = {@JsonProperty("recordedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
@Setter(onMethod_ = {@JsonProperty("recordedOn"), @JsonFormat(pattern = "yyyy-MM-dd")})
private Date recordedOn;
@Getter(onMethod_ = {@JsonProperty("status")})
@Setter(onMethod_ = {@JsonProperty("status")})
private TherapyStatusCoding status;
@Getter(onMethod_ = {@JsonProperty("statusReason")})
@Setter(onMethod_ = {@JsonProperty("statusReason")})
private MtbTherapyStatusReasonCoding statusReason;
@Getter(onMethod_ = {@JsonProperty("therapyLine")})
@Setter(onMethod_ = {@JsonProperty("therapyLine")})
private Long therapyLine;
@JsonProperty("basedOn")
public Reference getBasedOn() { return basedOn; }
@JsonProperty("basedOn")
public void setBasedOn(Reference value) { this.basedOn = value; }
@JsonProperty("category")
public MtbSystemicTherapyCategoryCoding getCategory() { return category; }
@JsonProperty("category")
public void setCategory(MtbSystemicTherapyCategoryCoding value) { this.category = value; }
@JsonProperty("dosage")
public MtbSystemicTherapyDosageDensityCoding getDosage() { return dosage; }
@JsonProperty("dosage")
public void setDosage(MtbSystemicTherapyDosageDensityCoding value) { this.dosage = value; }
@JsonProperty("id")
public String getId() { return id; }
@JsonProperty("id")
public void setId(String value) { this.id = value; }
@JsonProperty("intent")
public MtbTherapyIntentCoding getIntent() { return intent; }
@JsonProperty("intent")
public void setIntent(MtbTherapyIntentCoding value) { this.intent = value; }
@JsonProperty("medication")
public List<AtcUnregisteredMedicationCoding> getMedication() { return medication; }
@JsonProperty("medication")
public void setMedication(List<AtcUnregisteredMedicationCoding> value) { this.medication = value; }
@JsonProperty("notes")
public List<String> getNotes() { return notes; }
@JsonProperty("notes")
public void setNotes(List<String> value) { this.notes = value; }
@JsonProperty("patient")
public Reference getPatient() { return patient; }
@JsonProperty("patient")
public void setPatient(Reference value) { this.patient = value; }
@JsonProperty("period")
public PeriodDate getPeriod() { return period; }
@JsonProperty("period")
public void setPeriod(PeriodDate value) { this.period = value; }
@JsonProperty("reason")
public Reference getReason() { return reason; }
@JsonProperty("reason")
public void setReason(Reference value) { this.reason = value; }
@JsonProperty("recommendationFulfillmentStatus")
public MtbSystemicTherapyRecommendationFulfillmentStatusCoding getRecommendationFulfillmentStatus() { return recommendationFulfillmentStatus; }
@JsonProperty("recommendationFulfillmentStatus")
public void setRecommendationFulfillmentStatus(MtbSystemicTherapyRecommendationFulfillmentStatusCoding value) { this.recommendationFulfillmentStatus = value; }
@JsonProperty("recordedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public Date getRecordedOn() { return recordedOn; }
@JsonProperty("recordedOn")
@JsonFormat(pattern = "yyyy-MM-dd")
public void setRecordedOn(Date value) { this.recordedOn = value; }
@JsonProperty("status")
public TherapyStatusCoding getStatus() { return status; }
@JsonProperty("status")
public void setStatus(TherapyStatusCoding value) { this.status = value; }
@JsonProperty("statusReason")
public MtbTherapyStatusReasonCoding getStatusReason() { return statusReason; }
@JsonProperty("statusReason")
public void setStatusReason(MtbTherapyStatusReasonCoding value) { this.statusReason = value; }
@JsonProperty("therapyLine")
public Long getTherapyLine() { return therapyLine; }
@JsonProperty("therapyLine")
public void setTherapyLine(Long value) { this.therapyLine = value; }
}

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbSystemicTherapyCategoryCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbSystemicTherapyCategoryCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MtbSystemicTherapyCategoryCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MtbSystemicTherapyCategoryCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MtbSystemicTherapyCategoryCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbSystemicTherapyCategoryCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MtbSystemicTherapyCategoryCodingCode {
A, I, N, O, S;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbSystemicTherapyDosageDensityCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbSystemicTherapyDosageDensityCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MtbSystemicTherapyDosageDensityCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MtbSystemicTherapyDosageDensityCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MtbSystemicTherapyDosageDensityCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbSystemicTherapyDosageDensityCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MtbSystemicTherapyDosageDensityCodingCode {
OVER_50, UNDER_50;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbSystemicTherapyRecommendationFulfillmentStatusCoding.java
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@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbSystemicTherapyRecommendationFulfillmentStatusCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MtbSystemicTherapyRecommendationFulfillmentStatusCodingCode {
COMPLETE, PARTIAL;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbTherapyIntentCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbTherapyIntentCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MtbTherapyIntentCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MtbTherapyIntentCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MtbTherapyIntentCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbTherapyIntentCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MtbTherapyIntentCodingCode {
K, P, S, X;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbTherapyStatusReasonCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MtbTherapyStatusReasonCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private MtbTherapyStatusReasonCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public MtbTherapyStatusReasonCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(MtbTherapyStatusReasonCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MtbTherapyStatusReasonCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MtbTherapyStatusReasonCodingCode {
BEST_SUPPORTIVE_CARE, CHRONIC_REMISSION, DETERIORATION, LOST_TO_FU, MEDICAL_REASONS, NO_INDICATION, OTHER, OTHER_THERAPY_CHOSEN, PATIENT_DEATH, PATIENT_REFUSAL, PATIENT_WISH, PAYMENT_ENDED, PAYMENT_PENDING, PAYMENT_REFUSED, PROGRESSION, REGULAR_COMPLETION, REGULAR_COMPLETION_WITH_DOSAGE_REDUCTION, REGULAR_COMPLETION_WITH_SUBSTANCE_CHANGE, TOXICITY;

36
src/main/java/dev/pcvolkmer/mv64e/mtb/MvhMetadata.java
View File

@ -1,32 +1,26 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.List;
import java.util.Map;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class MvhMetadata {
@Getter(onMethod_ = {@JsonProperty("modelProjectConsent")})
@Setter(onMethod_ = {@JsonProperty("modelProjectConsent")})
private ModelProjectConsent modelProjectConsent;
@Getter(onMethod_ = {@JsonProperty("researchConsents")})
@Setter(onMethod_ = {@JsonProperty("researchConsents")})
private List<Map<String, Object>> researchConsents;
@Getter(onMethod_ = {@JsonProperty("transferTAN")})
@Setter(onMethod_ = {@JsonProperty("transferTAN")})
private String transferTan;
@Getter(onMethod_ = {@JsonProperty("type")})
@Setter(onMethod_ = {@JsonProperty("type")})
private MvhSubmissionType type;
@JsonProperty("modelProjectConsent")
public ModelProjectConsent getModelProjectConsent() { return modelProjectConsent; }
@JsonProperty("modelProjectConsent")
public void setModelProjectConsent(ModelProjectConsent value) { this.modelProjectConsent = value; }
@JsonProperty("researchConsents")
public List<Map<String, Object>> getResearchConsents() { return researchConsents; }
@JsonProperty("researchConsents")
public void setResearchConsents(List<Map<String, Object>> value) { this.researchConsents = value; }
@JsonProperty("transferTAN")
public String getTransferTan() { return transferTan; }
@JsonProperty("transferTAN")
public void setTransferTan(String value) { this.transferTan = value; }
@JsonProperty("type")
public MvhSubmissionType getType() { return type; }
@JsonProperty("type")
public void setType(MvhSubmissionType value) { this.type = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/MvhSubmissionType.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum MvhSubmissionType {
ADDITION, CORRECTION, FOLLOWUP, INITIAL;

35
src/main/java/dev/pcvolkmer/mv64e/mtb/NgsReportCoding.java
View File

@ -1,30 +1,23 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class NgsReportCoding {
@Getter(onMethod_ = {@JsonProperty("code")})
@Setter(onMethod_ = {@JsonProperty("code")})
private NgsReportCodingCode code;
@Getter(onMethod_ = {@JsonProperty("display")})
@Setter(onMethod_ = {@JsonProperty("display")})
private String display;
@Getter(onMethod_ = {@JsonProperty("system")})
@Setter(onMethod_ = {@JsonProperty("system")})
private String system;
@Getter(onMethod_ = {@JsonProperty("version")})
@Setter(onMethod_ = {@JsonProperty("version")})
private String version;
@JsonProperty("code")
public NgsReportCodingCode getCode() { return code; }
@JsonProperty("code")
public void setCode(NgsReportCodingCode value) { this.code = value; }
@JsonProperty("display")
public String getDisplay() { return display; }
@JsonProperty("display")
public void setDisplay(String value) { this.display = value; }
@JsonProperty("system")
public String getSystem() { return system; }
@JsonProperty("system")
public void setSystem(String value) { this.system = value; }
@JsonProperty("version")
public String getVersion() { return version; }
@JsonProperty("version")
public void setVersion(String value) { this.version = value; }
}

4
src/main/java/dev/pcvolkmer/mv64e/mtb/NgsReportCodingCode.java
View File

@ -1,7 +1,9 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonValue;
import java.io.IOException;
import com.fasterxml.jackson.annotation.*;
public enum NgsReportCodingCode {
ARRAY, EXOME, GENOME_LONG_READ, GENOME_SHORT_READ, KARYOTYPING, OTHER, PANEL, SINGLE;

42
src/main/java/dev/pcvolkmer/mv64e/mtb/NgsReportMetadata.java
View File

@ -1,36 +1,26 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class NgsReportMetadata {
@Getter(onMethod_ = {@JsonProperty("kitManufacturer")})
@Setter(onMethod_ = {@JsonProperty("kitManufacturer")})
private String kitManufacturer;
@Getter(onMethod_ = {@JsonProperty("kitType")})
@Setter(onMethod_ = {@JsonProperty("kitType")})
private String kitType;
@Getter(onMethod_ = {@JsonProperty("pipeline")})
@Setter(onMethod_ = {@JsonProperty("pipeline")})
private String pipeline;
@Getter(onMethod_ = {@JsonProperty("referenceGenome")})
@Setter(onMethod_ = {@JsonProperty("referenceGenome")})
private String referenceGenome;
@Getter(onMethod_ = {@JsonProperty("sequencer")})
@Setter(onMethod_ = {@JsonProperty("sequencer")})
private String sequencer;
@JsonProperty("kitManufacturer")
public String getKitManufacturer() { return kitManufacturer; }
@JsonProperty("kitManufacturer")
public void setKitManufacturer(String value) { this.kitManufacturer = value; }
@JsonProperty("kitType")
public String getKitType() { return kitType; }
@JsonProperty("kitType")
public void setKitType(String value) { this.kitType = value; }
@JsonProperty("pipeline")
public String getPipeline() { return pipeline; }
@JsonProperty("pipeline")
public void setPipeline(String value) { this.pipeline = value; }
@JsonProperty("referenceGenome")
public String getReferenceGenome() { return referenceGenome; }
@JsonProperty("referenceGenome")
public void setReferenceGenome(String value) { this.referenceGenome = value; }
@JsonProperty("sequencer")
public String getSequencer() { return sequencer; }
@JsonProperty("sequencer")
public void setSequencer(String value) { this.sequencer = value; }
}

71
src/main/java/dev/pcvolkmer/mv64e/mtb/NgsReportResults.java
View File

@ -1,61 +1,40 @@
package dev.pcvolkmer.mv64e.mtb;
import com.fasterxml.jackson.annotation.*;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.*;
import java.util.List;
@Data
@AllArgsConstructor
@NoArgsConstructor
@Builder
public class NgsReportResults {
@Getter(onMethod_ = {@JsonProperty("brcaness")})
@Setter(onMethod_ = {@JsonProperty("brcaness")})
private Brcaness brcaness;
@Getter(onMethod_ = {@JsonProperty("copyNumberVariants")})
@Setter(onMethod_ = {@JsonProperty("copyNumberVariants")})
private List<Cnv> copyNumberVariants;
@Getter(onMethod_ = {@JsonProperty("dnaFusions")})
@Setter(onMethod_ = {@JsonProperty("dnaFusions")})
private List<DnaFusion> dnaFusions;
@Getter(onMethod_ = {@JsonProperty("hrdScore")})
@Setter(onMethod_ = {@JsonProperty("hrdScore")})
private HrdScore hrdScore;
@Getter(onMethod_ = {@JsonProperty("rnaFusions")})
@Setter(onMethod_ = {@JsonProperty("rnaFusions")})
private List<RnaFusion> rnaFusions;
@Getter(onMethod_ = {@JsonProperty("rnaSeqs")})
@Setter(onMethod_ = {@JsonProperty("rnaSeqs")})
private List<RnaSeq> rnaSeqs;
@Getter(onMethod_ = {@JsonProperty("simpleVariants")})
@Setter(onMethod_ = {@JsonProperty("simpleVariants")})
private List<Snv> simpleVariants;
@Getter(onMethod_ = {@JsonProperty("tmb")})
@Setter(onMethod_ = {@JsonProperty("tmb")})
private Tmb tmb;
@Getter(onMethod_ = {@JsonProperty("tumorCellContent")})
@Setter(onMethod_ = {@JsonProperty("tumorCellContent")})
private TumorCellContent tumorCellContent;
@JsonProperty("brcaness")
public Brcaness getBrcaness() { return brcaness; }
@JsonProperty("brcaness")
public void setBrcaness(Brcaness value) { this.brcaness = value; }
@JsonProperty("copyNumberVariants")
public List<Cnv> getCopyNumberVariants() { return copyNumberVariants; }
@JsonProperty("copyNumberVariants")
public void setCopyNumberVariants(List<Cnv> value) { this.copyNumberVariants = value; }
@JsonProperty("dnaFusions")
public List<DnaFusion> getDnaFusions() { return dnaFusions; }
@JsonProperty("dnaFusions")
public void setDnaFusions(List<DnaFusion> value) { this.dnaFusions = value; }
@JsonProperty("hrdScore")
public HrdScore getHrdScore() { return hrdScore; }
@JsonProperty("hrdScore")
public void setHrdScore(HrdScore value) { this.hrdScore = value; }
@JsonProperty("rnaFusions")
public List<RnaFusion> getRnaFusions() { return rnaFusions; }
@JsonProperty("rnaFusions")
public void setRnaFusions(List<RnaFusion> value) { this.rnaFusions = value; }
@JsonProperty("rnaSeqs")
public List<RnaSeq> getRnaSeqs() { return rnaSeqs; }
@JsonProperty("rnaSeqs")
public void setRnaSeqs(List<RnaSeq> value) { this.rnaSeqs = value; }
@JsonProperty("simpleVariants")
public List<Snv> getSimpleVariants() { return simpleVariants; }
@JsonProperty("simpleVariants")
public void setSimpleVariants(List<Snv> value) { this.simpleVariants = value; }
@JsonProperty("tmb")
public Tmb getTmb() { return tmb; }
@JsonProperty("tmb")
public void setTmb(Tmb value) { this.tmb = value; }
@JsonProperty("tumorCellContent")
public TumorCellContent getTumorCellContent() { return tumorCellContent; }
@JsonProperty("tumorCellContent")
public void setTumorCellContent(TumorCellContent value) { this.tumorCellContent = value; }
}

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