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https://github.com/pcvolkmer/onkostar-plugin-dnpm.git
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Issue #5: Vorschlag für den Aufbau des Projekts
* Maven-Projekt direkt im Hauptverzeichnis * Anpassung der Maven-POM-Datei - nicht benötigte Abhängigkeiten entfernt * Gitignore-Datei angelegt
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315
src/main/java/DNPM/DNPMHelper.java
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315
src/main/java/DNPM/DNPMHelper.java
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package DNPM;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import org.hibernate.SQLQuery;
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import org.hibernate.Session;
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import org.hibernate.SessionFactory;
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import org.hibernate.transform.Transformers;
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import org.hibernate.type.StandardBasicTypes;
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import org.springframework.beans.factory.annotation.Autowired;
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import com.fasterxml.jackson.core.JsonProcessingException;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import de.itc.onkostar.api.Disease;
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import de.itc.onkostar.api.IOnkostarApi;
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import de.itc.onkostar.api.Item;
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import de.itc.onkostar.api.Procedure;
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import de.itc.onkostar.api.analysis.AnalyzerRequirement;
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import de.itc.onkostar.api.analysis.IProcedureAnalyzer;
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import de.itc.onkostar.api.analysis.OnkostarPluginType;
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public class DNPMHelper implements IProcedureAnalyzer{
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// Laden der API
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@Autowired
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private IOnkostarApi onkostarApi;
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@Override
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public OnkostarPluginType getType() {
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// Typ des Plugins
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// Für das Interface IProcedureAnalyzer gültig sind ANALYZER und BACKEND_SERVICE
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return OnkostarPluginType.BACKEND_SERVICE;
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}
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@Override
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public String getVersion() {
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return "1";
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}
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@Override
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public String getName() {
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return "UMR DNPM";
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}
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@Override
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public String getDescription() {
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return "Methoden für DNPM-Formulare";
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}
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@Override
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public boolean isRelevantForDeletedProcedure() {
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return false;
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}
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@Override
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public boolean isSynchronous() {
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return true;
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}
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@Override
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public AnalyzerRequirement getRequirement() {
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return AnalyzerRequirement.PROCEDURE;
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}
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@Override
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public boolean isRelevantForAnalyzer(Procedure entry, Disease currentDisease) {
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// Plugin enthält nur Methoden für Formulare und soll nicht ausgeführt werden
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return false;
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}
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@Override
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public void analyze(Procedure entry, Disease currentDisease) {
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// wird nicht benötigt, da dass Plugin nicht ausgeführt wird
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}
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@SuppressWarnings("unchecked")
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public Object getVerweise(final Map<String, Object> input) {
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int ProcedureId = (int) input.get("ProcedureId");
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int PatientId = (int) input.get("PatientId");
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int value = 0;
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List<Map<String, String>> VerbundeneFormulare = new ArrayList<Map<String, String>>();
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try {
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SessionFactory sessionFactory = onkostarApi.getSessionFactory();
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Session session = sessionFactory.getCurrentSession();
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try {
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String sql = "SELECT prozedur.id AS procedure_id, prozedur.data_form_id, data_catalogue.name AS data_catalogue, data_catalogue_entry.name AS data_catalogue_entry, data_form.description AS formname, prozedur.beginndatum AS datum " +
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"FROM prozedur " +
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"LEFT JOIN data_form_data_catalogue ON data_form_data_catalogue.data_form_id = prozedur.data_form_id " +
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"LEFT JOIN data_catalogue_entry ON data_catalogue_entry.data_catalogue_id = data_form_data_catalogue.data_catalogue_id " +
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"LEFT JOIN data_catalogue ON data_catalogue.id = data_catalogue_entry.data_catalogue_id " +
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"LEFT JOIN data_form ON data_form.id = prozedur.data_form_id " +
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"WHERE patient_id = " + PatientId + " " +
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"AND geloescht = 0 " +
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"AND data_catalogue_entry.type = 'formReference' " +
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"GROUP BY prozedur.id, prozedur.data_form_id, data_catalogue.name, data_catalogue_entry.name";
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SQLQuery query = session.createSQLQuery(sql)
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.addScalar("procedure_id", StandardBasicTypes.INTEGER)
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.addScalar("data_form_id", StandardBasicTypes.INTEGER)
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.addScalar("data_catalogue", StandardBasicTypes.STRING)
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.addScalar("data_catalogue_entry", StandardBasicTypes.STRING)
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.addScalar("formname", StandardBasicTypes.STRING)
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.addScalar("datum", StandardBasicTypes.DATE);
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query.setResultTransformer(Transformers.aliasToBean(VerweisVon.class));
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List<VerweisVon> result = query.list();
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try {
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for (VerweisVon var : result) {
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sql = var.getSQL();
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query = session.createSQLQuery(sql)
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.addScalar("value", StandardBasicTypes.INTEGER);
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if (query.uniqueResult() != null) {
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value = (Integer)query.uniqueResult();
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}
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if (value == ProcedureId) {
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VerbundeneFormulare.add(Map.of("formular", var.getVerbundenesFormular()));
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value = 0;
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}
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}
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} catch (Exception e) {
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// TODO Auto-generated catch block
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e.printStackTrace();
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}
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} catch (Exception e) {
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return null;
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}
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} catch (Exception e) {
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return null;
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}
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return VerbundeneFormulare;
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}
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public Object getSystemischeTherapienFromDiagnose(final Map<String, Object> input) {
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int DiagnoseId = (int) input.get("DiagnoseId");
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String jsonStr = "";
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List<Object> Rueckgabewerte = new ArrayList<Object>();
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List<Procedure> Prozeduren = onkostarApi.getProceduresForDiseaseByForm(DiagnoseId, "OS.Systemische Therapie");
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// für jede Prozedur
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for (Procedure Prozedur : Prozeduren) {
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String Beginn = new String();
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String Ende = new String();
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String Wirkstoffe = new String();
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String Beendigung = new String();
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String Ergebnis = new String();
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// SubstanzenCodesListe enthält die Liste der SubstanzenCodes
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List<Map<String, String>> SubstanzenCodesListe = new ArrayList<Map<String, String>>();
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// alle Werte der Prozedur auslesen
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Map<String, Item> alleWerte = Prozedur.getAllValues();
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// Prozedurwerte enthält nur die interessanten Werte
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Map<String, Object> Prozedurwerte = new HashMap<>();
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// alle Werte durchgehen und die interessanten übernehmen
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for (Map.Entry<String, Item> WerteListe : alleWerte.entrySet()) {
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// Datum des Hauptformulars merken
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if (WerteListe.getKey().equals("Beendigung")) {
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Beendigung = WerteListe.getValue().getValue();
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}
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if (WerteListe.getKey().equals("Ergebnis")) {
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Ergebnis = WerteListe.getValue().getValue();
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}
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if (WerteListe.getKey().equals("Beginn")) {
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Beginn = WerteListe.getValue().getString();// + "," + WerteListe.getValue().getDateAccuracy();
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}
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if (WerteListe.getKey().equals("Ende")) {
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Ende = WerteListe.getValue().getString();// + "," + WerteListe.getValue().getDateAccuracy();
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}
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// im Subformular (SubstanzenList) Substanzen auslesen
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if (WerteListe.getKey().equals("SubstanzenList")) {
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int Index = -1;
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// SubstanzenCodesListe enthält die Liste der SubstanzenCodes eines Subformulars
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ArrayList<Map<String, Map<String, String>>> Subformular = new ArrayList<>();
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Subformular = WerteListe.getValue().getValue();
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// Werte aus Subformular verarbeiten
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for (Map<String, Map<String, String>> SubformularWerte: Subformular) {
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// SubstanzenCodes enthält den Code und den Namen einer Substanz
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Map<String, String> SubstanzenCodes = new HashMap<String, String>();
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// Index des Codes (Substanz)
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Index = Arrays.asList((SubformularWerte.keySet().toArray())).indexOf("Substanz");
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if (SubformularWerte.values().toArray()[Index].toString().matches("[A-V]0[1-9][A-Z]{2}[0-9]{0,2}")) {
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SubstanzenCodes.put("system", "ATC");
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} else {
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SubstanzenCodes.put("system", "other");
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}
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SubstanzenCodes.put("code", (String) SubformularWerte.values().toArray()[Index]);
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// Index der Substanz (Substanz_shortDescription)
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Index = Arrays.asList((SubformularWerte.keySet().toArray())).indexOf("Substanz_shortDescription");
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SubstanzenCodes.put("substance", (String) SubformularWerte.values().toArray()[Index]);
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SubstanzenCodesListe.add(SubstanzenCodes);
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Wirkstoffe = Wirkstoffe + (String) SubformularWerte.values().toArray()[Index] + ", ";
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}
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}
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}
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ObjectMapper Obj = new ObjectMapper();
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try {
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jsonStr = Obj.writeValueAsString(SubstanzenCodesListe);
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} catch (JsonProcessingException e) {
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// TODO Auto-generated catch block
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e.printStackTrace();
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}
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Prozedurwerte.put("Beginn", Beginn);
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Prozedurwerte.put("Ende", Ende);
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Prozedurwerte.put("Beendigung", Beendigung);
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Prozedurwerte.put("Ergebnis", Ergebnis);
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Prozedurwerte.put("Wirkstoffe", Wirkstoffe.substring(0, Wirkstoffe.length()-2));
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Prozedurwerte.put("WirkstoffCodes", jsonStr);
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Rueckgabewerte.add(Prozedurwerte);
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}
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return Rueckgabewerte;
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}
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public Object getProzedurenFromDiagnose(final Map<String, Object> input) {
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String dataForm = (String) input.get("dataForm");
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int DiagnoseId = (int) input.get("DiagnoseId");
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int PatientId = (int) input.get("PatientId");
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// Prozedur, Feldname, Wert
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List<Object> Formulare = new ArrayList<Object>();
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String jsonStr = "";
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List<Procedure> Prozeduren = onkostarApi.getProceduresByPatientId(PatientId);
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for (Procedure Prozedur: Prozeduren ) {
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// Formular gehört zur aktuellen Diagnose und hat den angegebenen Namen
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if (Prozedur.getDiseaseIds().contains(DiagnoseId) && Prozedur.getFormName().contains(dataForm)) {
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// alle Werte auslesen
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Map<String, Item> Werte = Prozedur.getAllValues();
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Map<String, Object> Values = new HashMap<>();
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for (Map.Entry<String, Item> WerteListe: Werte.entrySet()) {
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Values.put(WerteListe.getKey(), WerteListe.getValue());
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// System.out.println(WerteListe.getKey() + ": " + WerteListe.getValue());
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}
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Map<String, Object> Formular = new HashMap<>();
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Formular.put("Formular", Prozedur.getFormName());
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Formular.put("Felder", Values);
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Formulare.add(Formular);
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}
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}
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ObjectMapper Obj = new ObjectMapper();
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try {
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jsonStr = Obj.writeValueAsString(Formulare);
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} catch (JsonProcessingException e) {
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// TODO Auto-generated catch block
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e.printStackTrace();
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}
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return jsonStr;
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}
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public Object getEmpfehlung(final Map<String, Object> input) {
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// Auslesen der Parameter aus 'input'
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int ProcedureID = (int) input.get("ProcedureID");
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String sql;
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try {
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SessionFactory sessionFactory = onkostarApi.getSessionFactory();
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Session session = sessionFactory.getCurrentSession();
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try {
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sql = "SELECT * FROM prozedur "
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+ "LEFT JOIN dk_mtb_einzelempfehlung em ON em.id = prozedur.id "
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+ "WHERE prozedur.hauptprozedur_id = " + ProcedureID + " AND prozedur.geloescht = 0 AND prozedur.data_form_id = 489 "
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+ "ORDER BY beginndatum";
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SQLQuery query = session.createSQLQuery(sql)
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.addScalar("id", StandardBasicTypes.STRING)
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.addScalar("genname", StandardBasicTypes.STRING)
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.addScalar("geneid", StandardBasicTypes.STRING)
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.addScalar("geneidlink", StandardBasicTypes.STRING)
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.addScalar("empfehlung", StandardBasicTypes.STRING)
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.addScalar("beginndatum", StandardBasicTypes.STRING);
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@SuppressWarnings("unchecked")
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List<String[]> rows = query.list();
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return rows;
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} catch (Exception e) {
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return null;
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}
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} catch (Exception e) {
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return null;
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}
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}
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public Object updateEmpfehlungPrio(final Map<String, Object> input) {
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// Auslesen der Parameter aus 'input'
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//int rid = (int) input.get("rid");
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Object rid = input.get("rid");
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Object strDate = input.get("bd");
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SQLQuery result = null;
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//String strD = strDate.toString();
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//String CompareDate = strD.substring(1, 11);
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//DateFormat simpleDateFormat=new SimpleDateFormat("yyyy-MM-dd");
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String sql;
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try {
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sql = "UPDATE prozedur SET beginndatum = '"+ strDate +"' WHERE id = '"+ rid +"' ";
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result = onkostarApi.getSessionFactory().getCurrentSession().createSQLQuery(sql);
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result.executeUpdate();
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return true;
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} catch (Exception e) {
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return "Achtung: Ein Fehler ist aufgetreten, Änderung konnte nicht gespeichert werden!";
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//return null;
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}
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}
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}
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