mirror of
https://github.com/pcvolkmer/onkostar-plugin-dnpm.git
synced 2025-07-04 18:12:55 +00:00
Merge pull request #12 from CCC-MF/issue_11
Übernahme des MTB-Protokolls in DNPM-Therapieplan - Protokollauszug
This commit is contained in:
6
pom.xml
6
pom.xml
@ -47,6 +47,12 @@
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<version>${spring-version}</version>
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<version>${spring-version}</version>
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<scope>provided</scope>
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<scope>provided</scope>
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</dependency>
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</dependency>
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<dependency>
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<groupId>org.springframework.data</groupId>
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<artifactId>spring-data-jpa</artifactId>
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<version>1.2.0.RELEASE</version>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<dependency>
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<groupId>com.fasterxml.jackson.core</groupId>
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<groupId>com.fasterxml.jackson.core</groupId>
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<artifactId>jackson-databind</artifactId>
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<artifactId>jackson-databind</artifactId>
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@ -3,6 +3,7 @@ package DNPM.analyzer;
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import DNPM.services.Studie;
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import DNPM.services.Studie;
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import DNPM.services.StudienService;
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import DNPM.services.StudienService;
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import DNPM.services.TherapieplanServiceFactory;
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import DNPM.services.TherapieplanServiceFactory;
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import DNPM.services.mtb.MtbService;
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import de.itc.onkostar.api.Disease;
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import de.itc.onkostar.api.Disease;
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import de.itc.onkostar.api.Procedure;
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import de.itc.onkostar.api.Procedure;
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import de.itc.onkostar.api.analysis.AnalyseTriggerEvent;
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import de.itc.onkostar.api.analysis.AnalyseTriggerEvent;
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@ -27,12 +28,16 @@ public class TherapieplanAnalyzer implements IProcedureAnalyzer {
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private final TherapieplanServiceFactory therapieplanServiceFactory;
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private final TherapieplanServiceFactory therapieplanServiceFactory;
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private final MtbService mtbService;
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public TherapieplanAnalyzer(
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public TherapieplanAnalyzer(
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final StudienService studienService,
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final StudienService studienService,
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final TherapieplanServiceFactory therapieplanServiceFactory
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final TherapieplanServiceFactory therapieplanServiceFactory,
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final MtbService mtbService
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) {
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) {
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this.studienService = studienService;
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this.studienService = studienService;
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this.therapieplanServiceFactory = therapieplanServiceFactory;
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this.therapieplanServiceFactory = therapieplanServiceFactory;
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this.mtbService = mtbService;
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}
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}
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@Override
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@Override
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@ -110,6 +115,7 @@ public class TherapieplanAnalyzer implements IProcedureAnalyzer {
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* </pre>
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* </pre>
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*
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*
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* @param input Map mit Eingabewerten
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* @param input Map mit Eingabewerten
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* @return Liste mit Studien
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*/
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*/
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public List<Studie> getStudien(Map<String, Object> input) {
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public List<Studie> getStudien(Map<String, Object> input) {
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var query = input.get("q");
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var query = input.get("q");
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@ -120,4 +126,38 @@ public class TherapieplanAnalyzer implements IProcedureAnalyzer {
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return studienService.findByQuery(query.toString());
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return studienService.findByQuery(query.toString());
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}
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}
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/**
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* Übergibt den Text der referenzierten MTBs für den Protokollauszug
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*
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* <p>Wurde der Eingabewert <code>id</code> nicht übergeben, wird ein leerer String zurück gegeben.
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*
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* <p>Beispiel zur Nutzung in einem Formularscript
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* <pre>
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* executePluginMethod(
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* 'TherapieplanAnalyzer',
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* 'getProtokollauszug',
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* { id: 12345 },
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* (response) => console.log(response),
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* false
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* );
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* </pre>
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*
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* @param input Map mit Eingabewerten
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* @return Zeichenkette mit Protokollauszug
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*/
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public String getProtokollauszug(Map<String, Object> input) {
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var id = input.get("id");
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if (null == id || 0 == Integer.parseInt(id.toString())) {
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return "";
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}
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var procedureId = Integer.parseInt(id.toString());
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return mtbService.getProtocol(
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therapieplanServiceFactory
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.currentUsableInstance()
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.findReferencedMtbs(procedureId)
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);
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}
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}
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}
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@ -1,10 +1,14 @@
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package DNPM.config;
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package DNPM.config;
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import DNPM.database.SettingsRepository;
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import DNPM.services.*;
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import DNPM.services.*;
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import DNPM.services.mtb.DefaultMtbService;
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import DNPM.services.mtb.MtbService;
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import de.itc.onkostar.api.IOnkostarApi;
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import de.itc.onkostar.api.IOnkostarApi;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.ComponentScan;
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import org.springframework.context.annotation.ComponentScan;
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import org.springframework.context.annotation.Configuration;
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import org.springframework.context.annotation.Configuration;
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import org.springframework.data.jpa.repository.config.EnableJpaRepositories;
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import javax.sql.DataSource;
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import javax.sql.DataSource;
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@ -15,6 +19,7 @@ import javax.sql.DataSource;
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*/
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*/
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@Configuration
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@Configuration
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@ComponentScan(basePackages = "DNPM.analyzer")
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@ComponentScan(basePackages = "DNPM.analyzer")
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@EnableJpaRepositories(basePackages = "DNPM.database")
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public class PluginConfiguration {
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public class PluginConfiguration {
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@Bean
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@Bean
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@ -28,8 +33,22 @@ public class PluginConfiguration {
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}
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}
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@Bean
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@Bean
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public TherapieplanServiceFactory therapieplanServiceFactory(final IOnkostarApi onkostarApi, final FormService formService) {
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public SettingsService settingsService(final SettingsRepository settingsRepository) {
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return new TherapieplanServiceFactory(onkostarApi, formService);
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return new SettingsService(settingsRepository);
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}
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@Bean
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public MtbService mtbService(final SettingsService settingsService) {
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return new DefaultMtbService(settingsService);
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}
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@Bean
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public TherapieplanServiceFactory therapieplanServiceFactory(
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final IOnkostarApi onkostarApi,
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final SettingsService settingsService,
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final FormService formService
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) {
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return new TherapieplanServiceFactory(onkostarApi, settingsService, formService);
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}
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}
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}
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}
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20
src/main/java/DNPM/database/ReadOnlyRepository.java
Normal file
20
src/main/java/DNPM/database/ReadOnlyRepository.java
Normal file
@ -0,0 +1,20 @@
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package DNPM.database;
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import org.springframework.data.repository.NoRepositoryBean;
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import org.springframework.data.repository.Repository;
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import java.io.Serializable;
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import java.util.List;
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/**
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* Basis-Repository for ReadOnly Spring-Data-JPA Repositories
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* <p>Entity-Klassen müssen in Package <code>de.itc.db.dnpm</code> liegen
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* @param <T> Typ des Entities
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* @param <ID> Typ der ID
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*/
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@NoRepositoryBean
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public interface ReadOnlyRepository<T, ID extends Serializable> extends Repository<T, ID> {
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List<T> findAll();
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}
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14
src/main/java/DNPM/database/SettingsRepository.java
Normal file
14
src/main/java/DNPM/database/SettingsRepository.java
Normal file
@ -0,0 +1,14 @@
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package DNPM.database;
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import de.itc.db.dnpm.Setting;
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import org.springframework.stereotype.Repository;
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/**
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* Spring Data JPA Repository zum Lesen von Einstellungen
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*/
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@Repository("dnpmSettingRepository")
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public interface SettingsRepository extends ReadOnlyRepository<Setting, Long> {
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Setting findByName(String name);
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}
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@ -6,6 +6,7 @@ import de.itc.onkostar.api.Procedure;
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import org.slf4j.Logger;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.slf4j.LoggerFactory;
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import java.util.List;
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import java.util.Objects;
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import java.util.Objects;
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import static DNPM.services.FormService.hasValue;
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import static DNPM.services.FormService.hasValue;
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@ -36,6 +37,40 @@ public class DefaultTherapieplanService implements TherapieplanService {
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this.updateMtbInSubforms(procedure);
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this.updateMtbInSubforms(procedure);
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}
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}
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/**
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* Finde verlinkte MTBs in Hauptformular und Unterformularen
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*
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* @param procedure Die Prozedur mit Hauptformular
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* @return Liste mit verlinkten MTBs
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*/
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@Override
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public List<Procedure> findReferencedMtbs(Procedure procedure) {
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if (!hasValue(procedure, "referstemtb")) {
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return List.of();
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}
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var mtbProcedure = this.onkostarApi.getProcedure(procedure.getValue("referstemtb").getInt());
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if (null == mtbProcedure) {
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return List.of();
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}
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return List.of(mtbProcedure);
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}
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/**
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* Finde verlinkte MTBs in Hauptformular und Unterformularen
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*
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* @param procedureId ID der Prozedur mit Hauptformular
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* @return Liste mit verlinkten MTBs
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*/
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@Override
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public List<Procedure> findReferencedMtbs(int procedureId) {
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var procedure = this.onkostarApi.getProcedure(procedureId);
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if (null == procedure) {
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return List.of();
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}
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return findReferencedMtbs(procedure);
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}
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private void updateMtbInSections(Procedure procedure) {
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private void updateMtbInSections(Procedure procedure) {
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if (!isYes(procedure, "humangenberatung") && !isYes(procedure, "reevaluation")) {
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if (!isYes(procedure, "humangenberatung") && !isYes(procedure, "reevaluation")) {
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return;
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return;
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@ -1,12 +1,75 @@
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package DNPM.services;
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package DNPM.services;
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import de.itc.onkostar.api.IOnkostarApi;
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import de.itc.onkostar.api.Procedure;
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import de.itc.onkostar.api.Procedure;
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import java.util.ArrayList;
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import java.util.Comparator;
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import java.util.List;
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import java.util.Objects;
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import java.util.stream.Collectors;
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import static DNPM.services.FormService.hasValue;
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import static DNPM.services.FormService.isYes;
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public class MultipleMtbTherapieplanService implements TherapieplanService {
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public class MultipleMtbTherapieplanService implements TherapieplanService {
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private final IOnkostarApi onkostarApi;
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private final FormService formService;
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public MultipleMtbTherapieplanService(final IOnkostarApi onkostarApi, final FormService formService) {
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this.onkostarApi = onkostarApi;
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this.formService = formService;
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}
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@Override
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@Override
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public void updateRequiredMtbEntries(Procedure procedure) {
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public void updateRequiredMtbEntries(Procedure procedure) {
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// No action required
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// No action required
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}
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}
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|
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@Override
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public List<Procedure> findReferencedMtbs(Procedure procedure) {
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var procedureIds = new ArrayList<Integer>();
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|
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var mtbReference = procedure.getValue("referstemtb").getInt();
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procedureIds.add(mtbReference);
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|
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if (isYes(procedure, "humangenberatung") && hasValue(procedure, "reftkhumangenber")) {
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procedureIds.add(procedure.getValue("reftkhumangenber").getInt());
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}
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if (isYes(procedure, "reevaluation") && hasValue(procedure, "reftkreevaluation")) {
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procedureIds.add(procedure.getValue("reftkreevaluation").getInt());
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|
}
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|
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|
formService.getSubFormProcedureIds(procedure.getId()).stream()
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.map(onkostarApi::getProcedure)
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|
.filter(Objects::nonNull)
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|
.forEach(subform -> {
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|
if (subform.getFormName().equals("DNPM UF Einzelempfehlung")) {
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|
procedureIds.add(subform.getValue("mtb").getInt());
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|
}
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|
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|
if (subform.getFormName().equals("DNPM UF Rebiopsie")) {
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|
procedureIds.add(subform.getValue("reftumorkonferenz").getInt());
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|
}
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|
});
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|
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|
return procedureIds.stream()
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|
.distinct()
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|
.map(onkostarApi::getProcedure)
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|
.filter(Objects::nonNull)
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|
.sorted(Comparator.comparing(Procedure::getStartDate))
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|
.collect(Collectors.toList());
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|
}
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|
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|
@Override
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|
public List<Procedure> findReferencedMtbs(int procedureId) {
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|
var procedure = this.onkostarApi.getProcedure(procedureId);
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|
if (null == procedure) {
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|
return List.of();
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|
}
|
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|
return findReferencedMtbs(procedure);
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|
}
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}
|
}
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|
47
src/main/java/DNPM/services/SettingsService.java
Normal file
47
src/main/java/DNPM/services/SettingsService.java
Normal file
@ -0,0 +1,47 @@
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|
package DNPM.services;
|
||||||
|
|
||||||
|
import DNPM.database.SettingsRepository;
|
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|
|
||||||
|
import java.util.Optional;
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Implementiert den Dienst zur Ermittlung von Systemeinstellungen
|
||||||
|
*/
|
||||||
|
public class SettingsService {
|
||||||
|
|
||||||
|
private final SettingsRepository settingsRepository;
|
||||||
|
|
||||||
|
public SettingsService(final SettingsRepository settingsRepository) {
|
||||||
|
this.settingsRepository = settingsRepository;
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||||||
|
}
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Übergibt ein <code>Optional</code> für die Einstellung mit angegebenen Namen
|
||||||
|
* @param name Name der Einstellung
|
||||||
|
* @return Optional mit Wert der Einstellung oder ein leeres Optional, wenn Einstellung nicht gefunden
|
||||||
|
*/
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||||||
|
public Optional<String> getSetting(String name) {
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||||||
|
var sid = settingsRepository.findByName(name);
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||||||
|
if (null == sid) {
|
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|
return Optional.empty();
|
||||||
|
}
|
||||||
|
return Optional.of(sid.getValue());
|
||||||
|
}
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Übergibt die SID als <code>Optional</code>
|
||||||
|
* @return Optional mit Wert der SID
|
||||||
|
*/
|
||||||
|
public Optional<String> getSID() {
|
||||||
|
return getSetting("SID");
|
||||||
|
}
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Übergibt die Einstellung für <code>mehrere_mtb_in_mtbepisode</code>
|
||||||
|
* @return Übergibt <code>true</code>, wenn <code>mehrere_mtb_in_mtbepisode</code> auf "Ja" gesetzt ist.
|
||||||
|
*/
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||||||
|
public boolean multipleMtbsInMtbEpisode() {
|
||||||
|
var setting = getSetting("mehrere_mtb_in_mtbepisode");
|
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|
return setting.isPresent() && setting.get().equals("true");
|
||||||
|
}
|
||||||
|
}
|
@ -2,6 +2,8 @@ package DNPM.services;
|
|||||||
|
|
||||||
import de.itc.onkostar.api.Procedure;
|
import de.itc.onkostar.api.Procedure;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
public interface TherapieplanService {
|
public interface TherapieplanService {
|
||||||
|
|
||||||
/**
|
/**
|
||||||
@ -12,4 +14,20 @@ public interface TherapieplanService {
|
|||||||
*/
|
*/
|
||||||
void updateRequiredMtbEntries(Procedure procedure);
|
void updateRequiredMtbEntries(Procedure procedure);
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Finde verlinkte MTBs in Hauptformular und Unterformularen
|
||||||
|
*
|
||||||
|
* @param procedure Die Prozedur mit Hauptformular
|
||||||
|
* @return Liste mit verlinkten MTBs
|
||||||
|
*/
|
||||||
|
List<Procedure> findReferencedMtbs(Procedure procedure);
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Finde verlinkte MTBs in Hauptformular und Unterformularen
|
||||||
|
*
|
||||||
|
* @param procedureId ID der Prozedur mit Hauptformular
|
||||||
|
* @return Liste mit verlinkten MTBs
|
||||||
|
*/
|
||||||
|
List<Procedure> findReferencedMtbs(int procedureId);
|
||||||
|
|
||||||
}
|
}
|
||||||
|
@ -6,19 +6,23 @@ public class TherapieplanServiceFactory {
|
|||||||
|
|
||||||
private final IOnkostarApi onkostarApi;
|
private final IOnkostarApi onkostarApi;
|
||||||
|
|
||||||
|
private final SettingsService settingsService;
|
||||||
|
|
||||||
private final FormService formService;
|
private final FormService formService;
|
||||||
|
|
||||||
public TherapieplanServiceFactory(IOnkostarApi onkostarApi, FormService formService) {
|
public TherapieplanServiceFactory(
|
||||||
|
final IOnkostarApi onkostarApi,
|
||||||
|
final SettingsService settingsService,
|
||||||
|
final FormService formService
|
||||||
|
) {
|
||||||
this.onkostarApi = onkostarApi;
|
this.onkostarApi = onkostarApi;
|
||||||
|
this.settingsService = settingsService;
|
||||||
this.formService = formService;
|
this.formService = formService;
|
||||||
}
|
}
|
||||||
|
|
||||||
public TherapieplanService currentUsableInstance() {
|
public TherapieplanService currentUsableInstance() {
|
||||||
if (
|
if (settingsService.multipleMtbsInMtbEpisode()) {
|
||||||
null != onkostarApi.getGlobalSetting("mehrere_mtb_in_mtbepisode")
|
return new MultipleMtbTherapieplanService(onkostarApi, formService);
|
||||||
&& onkostarApi.getGlobalSetting("mehrere_mtb_in_mtbepisode").equals("true")
|
|
||||||
) {
|
|
||||||
return new MultipleMtbTherapieplanService();
|
|
||||||
}
|
}
|
||||||
|
|
||||||
return new DefaultTherapieplanService(onkostarApi, formService);
|
return new DefaultTherapieplanService(onkostarApi, formService);
|
||||||
|
39
src/main/java/DNPM/services/mtb/DefaultMtbService.java
Normal file
39
src/main/java/DNPM/services/mtb/DefaultMtbService.java
Normal file
@ -0,0 +1,39 @@
|
|||||||
|
package DNPM.services.mtb;
|
||||||
|
|
||||||
|
import DNPM.services.SettingsService;
|
||||||
|
import de.itc.onkostar.api.Procedure;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
public class DefaultMtbService implements MtbService {
|
||||||
|
|
||||||
|
private final SettingsService settingsService;
|
||||||
|
|
||||||
|
public DefaultMtbService(final SettingsService settingsService) {
|
||||||
|
this.settingsService = settingsService;
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public String getProtocol(List<Procedure> procedures) {
|
||||||
|
ProcedureToProtocolMapper mapper = null;
|
||||||
|
var sid = settingsService.getSID();
|
||||||
|
|
||||||
|
if (sid.isPresent()) {
|
||||||
|
switch (sid.get()) {
|
||||||
|
case "20119":
|
||||||
|
mapper = new OsTumorkonferenzVarianteUkwToProtocolMapper();
|
||||||
|
default:
|
||||||
|
if (!settingsService.multipleMtbsInMtbEpisode()) {
|
||||||
|
mapper = new OsTumorkonferenzToProtocolMapper();
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
if (null == mapper) {
|
||||||
|
return "";
|
||||||
|
}
|
||||||
|
|
||||||
|
return mapper.apply(procedures).orElse("");
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
9
src/main/java/DNPM/services/mtb/MtbService.java
Normal file
9
src/main/java/DNPM/services/mtb/MtbService.java
Normal file
@ -0,0 +1,9 @@
|
|||||||
|
package DNPM.services.mtb;
|
||||||
|
|
||||||
|
import de.itc.onkostar.api.Procedure;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
public interface MtbService {
|
||||||
|
String getProtocol(List<Procedure> procedures);
|
||||||
|
}
|
@ -0,0 +1,33 @@
|
|||||||
|
package DNPM.services.mtb;
|
||||||
|
|
||||||
|
import de.itc.onkostar.api.Procedure;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
import java.util.Optional;
|
||||||
|
|
||||||
|
public class OsTumorkonferenzToProtocolMapper implements ProcedureToProtocolMapper {
|
||||||
|
@Override
|
||||||
|
public Optional<String> apply(List<Procedure> procedures) {
|
||||||
|
assert(procedures.size() == 1);
|
||||||
|
|
||||||
|
var procedure = procedures.get(0);
|
||||||
|
|
||||||
|
assert(procedure.getFormName().equals("OS.Tumorkonferenz"));
|
||||||
|
|
||||||
|
var fragestellung = procedure.getValue("Fragestellung");
|
||||||
|
var empfehlung = procedure.getValue("Empfehlung");
|
||||||
|
|
||||||
|
if (
|
||||||
|
null != fragestellung && !fragestellung.getString().isBlank()
|
||||||
|
&& null != empfehlung && !empfehlung.getString().isBlank()
|
||||||
|
) {
|
||||||
|
return Optional.of(String.format("Fragestellung:\n%s\n\nEmpfehlung:\n%s", fragestellung.getString(), empfehlung.getString()));
|
||||||
|
} else if (null != fragestellung && !fragestellung.getString().isBlank()) {
|
||||||
|
return Optional.of(fragestellung.getString());
|
||||||
|
} else if (null != empfehlung && !empfehlung.getString().isBlank()) {
|
||||||
|
return Optional.of(empfehlung.getString());
|
||||||
|
}
|
||||||
|
|
||||||
|
return Optional.empty();
|
||||||
|
}
|
||||||
|
}
|
@ -0,0 +1,42 @@
|
|||||||
|
package DNPM.services.mtb;
|
||||||
|
|
||||||
|
import de.itc.onkostar.api.Procedure;
|
||||||
|
|
||||||
|
import java.util.Comparator;
|
||||||
|
import java.util.List;
|
||||||
|
import java.util.Optional;
|
||||||
|
import java.util.stream.Collectors;
|
||||||
|
|
||||||
|
public class OsTumorkonferenzVarianteUkwToProtocolMapper implements ProcedureToProtocolMapper {
|
||||||
|
@Override
|
||||||
|
public Optional<String> apply(List<Procedure> procedures) {
|
||||||
|
procedures.forEach(procedure -> {
|
||||||
|
assert (procedure.getFormName().equals("OS.Tumorkonferenz.VarianteUKW"));
|
||||||
|
});
|
||||||
|
|
||||||
|
procedures.sort(Comparator.comparing(Procedure::getStartDate));
|
||||||
|
|
||||||
|
var result = procedures.stream().map(procedure -> {
|
||||||
|
var fragestellung = procedure.getValue("Fragestellung");
|
||||||
|
var empfehlung = procedure.getValue("Empfehlung");
|
||||||
|
|
||||||
|
if (
|
||||||
|
null != fragestellung && !fragestellung.getString().isBlank()
|
||||||
|
&& null != empfehlung && !empfehlung.getString().isBlank()
|
||||||
|
) {
|
||||||
|
return String.format("Fragestellung:\n%s\n\nEmpfehlung:\n%s", fragestellung.getString().trim(), empfehlung.getString().trim());
|
||||||
|
} else if (null != fragestellung && !fragestellung.getString().isBlank()) {
|
||||||
|
return fragestellung.getString().trim();
|
||||||
|
} else if (null != empfehlung && !empfehlung.getString().isBlank()) {
|
||||||
|
return empfehlung.getString().trim();
|
||||||
|
}
|
||||||
|
return "";
|
||||||
|
}).collect(Collectors.joining("\n\n"));
|
||||||
|
|
||||||
|
if (!result.isBlank()) {
|
||||||
|
return Optional.of(result);
|
||||||
|
}
|
||||||
|
|
||||||
|
return Optional.empty();
|
||||||
|
}
|
||||||
|
}
|
@ -0,0 +1,10 @@
|
|||||||
|
package DNPM.services.mtb;
|
||||||
|
|
||||||
|
import de.itc.onkostar.api.Procedure;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
import java.util.Optional;
|
||||||
|
import java.util.function.Function;
|
||||||
|
|
||||||
|
@FunctionalInterface
|
||||||
|
public interface ProcedureToProtocolMapper extends Function<List<Procedure>, Optional<String>> {}
|
43
src/main/java/de/itc/db/dnpm/Setting.java
Normal file
43
src/main/java/de/itc/db/dnpm/Setting.java
Normal file
@ -0,0 +1,43 @@
|
|||||||
|
package de.itc.db.dnpm;
|
||||||
|
|
||||||
|
import org.hibernate.annotations.Immutable;
|
||||||
|
|
||||||
|
import javax.persistence.Column;
|
||||||
|
import javax.persistence.Entity;
|
||||||
|
import javax.persistence.Id;
|
||||||
|
import javax.persistence.Table;
|
||||||
|
|
||||||
|
@Entity
|
||||||
|
@Immutable
|
||||||
|
@Table(name = "einstellung")
|
||||||
|
public class Setting {
|
||||||
|
@Id
|
||||||
|
private Long id;
|
||||||
|
|
||||||
|
private String name;
|
||||||
|
|
||||||
|
@Column(name = "wert")
|
||||||
|
private String value;
|
||||||
|
|
||||||
|
protected Setting() {
|
||||||
|
// No content
|
||||||
|
}
|
||||||
|
|
||||||
|
public Setting(Long id, String name, String value) {
|
||||||
|
this.id = id;
|
||||||
|
this.name = name;
|
||||||
|
this.value = value;
|
||||||
|
}
|
||||||
|
|
||||||
|
public Long getId() {
|
||||||
|
return id;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getName() {
|
||||||
|
return name;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getValue() {
|
||||||
|
return value;
|
||||||
|
}
|
||||||
|
}
|
@ -1,9 +1,9 @@
|
|||||||
package DNPM.analyzer;
|
package DNPM.analyzer;
|
||||||
|
|
||||||
import DNPM.services.MultipleMtbTherapieplanService;
|
import DNPM.services.*;
|
||||||
import DNPM.services.StudienService;
|
import DNPM.services.mtb.MtbService;
|
||||||
import DNPM.services.TherapieplanServiceFactory;
|
|
||||||
import de.itc.onkostar.api.IOnkostarApi;
|
import de.itc.onkostar.api.IOnkostarApi;
|
||||||
|
import de.itc.onkostar.api.Item;
|
||||||
import de.itc.onkostar.api.Procedure;
|
import de.itc.onkostar.api.Procedure;
|
||||||
import org.junit.jupiter.api.BeforeEach;
|
import org.junit.jupiter.api.BeforeEach;
|
||||||
import org.junit.jupiter.api.Test;
|
import org.junit.jupiter.api.Test;
|
||||||
@ -13,6 +13,7 @@ import org.mockito.Mock;
|
|||||||
import org.mockito.junit.jupiter.MockitoExtension;
|
import org.mockito.junit.jupiter.MockitoExtension;
|
||||||
|
|
||||||
import java.util.HashMap;
|
import java.util.HashMap;
|
||||||
|
import java.util.List;
|
||||||
import java.util.Map;
|
import java.util.Map;
|
||||||
|
|
||||||
import static org.assertj.core.api.Assertions.assertThat;
|
import static org.assertj.core.api.Assertions.assertThat;
|
||||||
@ -24,22 +25,32 @@ public class TherapieplanAnalyzerTest {
|
|||||||
@Mock
|
@Mock
|
||||||
private IOnkostarApi onkostarApi;
|
private IOnkostarApi onkostarApi;
|
||||||
|
|
||||||
|
@Mock
|
||||||
|
private FormService formService;
|
||||||
|
|
||||||
@Mock
|
@Mock
|
||||||
private StudienService studienService;
|
private StudienService studienService;
|
||||||
|
|
||||||
@Mock
|
@Mock
|
||||||
private TherapieplanServiceFactory therapieplanServiceFactory;
|
private TherapieplanServiceFactory therapieplanServiceFactory;
|
||||||
|
|
||||||
|
@Mock
|
||||||
|
private TherapieplanService therapieplanService;
|
||||||
|
|
||||||
|
@Mock
|
||||||
|
private MtbService mtbService;
|
||||||
|
|
||||||
private TherapieplanAnalyzer therapieplanAnalyzer;
|
private TherapieplanAnalyzer therapieplanAnalyzer;
|
||||||
|
|
||||||
@BeforeEach
|
@BeforeEach
|
||||||
void setUp() {
|
void setUp() {
|
||||||
this.therapieplanAnalyzer = new TherapieplanAnalyzer(studienService, therapieplanServiceFactory);
|
this.therapieplanAnalyzer = new TherapieplanAnalyzer(studienService, therapieplanServiceFactory, mtbService);
|
||||||
}
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
void shouldRunServiceMethodsOnAnalyzeCalled() {
|
void shouldRunServiceMethodsOnAnalyzeCalled() {
|
||||||
when(this.therapieplanServiceFactory.currentUsableInstance()).thenReturn(new MultipleMtbTherapieplanService());
|
when(this.therapieplanServiceFactory.currentUsableInstance())
|
||||||
|
.thenReturn(new MultipleMtbTherapieplanService(onkostarApi, formService));
|
||||||
|
|
||||||
this.therapieplanAnalyzer.analyze(new Procedure(onkostarApi), null);
|
this.therapieplanAnalyzer.analyze(new Procedure(onkostarApi), null);
|
||||||
|
|
||||||
@ -72,4 +83,23 @@ public class TherapieplanAnalyzerTest {
|
|||||||
assertThat(captor.getValue()).isEqualTo("NCT-123");
|
assertThat(captor.getValue()).isEqualTo("NCT-123");
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void shouldRequestProtokollauszug() {
|
||||||
|
doAnswer(invocationOnMock -> {
|
||||||
|
var procedure = new Procedure(onkostarApi);
|
||||||
|
procedure.setValue("referstemtb", new Item("referstemtb", 2345));
|
||||||
|
return List.of(procedure);
|
||||||
|
}).when(this.therapieplanService).findReferencedMtbs(anyInt());
|
||||||
|
|
||||||
|
when(this.therapieplanServiceFactory.currentUsableInstance())
|
||||||
|
.thenReturn(therapieplanService);
|
||||||
|
|
||||||
|
var input = Map.of("id", (Object) 1234);
|
||||||
|
this.therapieplanAnalyzer.getProtokollauszug(input);
|
||||||
|
|
||||||
|
var captor = ArgumentCaptor.forClass(List.class);
|
||||||
|
verify(mtbService, times(1)).getProtocol(captor.capture());
|
||||||
|
assertThat(captor.getValue()).hasSize(1);
|
||||||
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
|
@ -1,6 +1,7 @@
|
|||||||
package DNPM.config;
|
package DNPM.config;
|
||||||
|
|
||||||
import DNPM.services.FormService;
|
import DNPM.services.FormService;
|
||||||
|
import DNPM.services.SettingsService;
|
||||||
import DNPM.services.TherapieplanServiceFactory;
|
import DNPM.services.TherapieplanServiceFactory;
|
||||||
import de.itc.onkostar.api.IOnkostarApi;
|
import de.itc.onkostar.api.IOnkostarApi;
|
||||||
import org.junit.jupiter.api.BeforeEach;
|
import org.junit.jupiter.api.BeforeEach;
|
||||||
@ -17,6 +18,9 @@ public class PluginConfigurationTest {
|
|||||||
@Mock
|
@Mock
|
||||||
private IOnkostarApi onkostarApi;
|
private IOnkostarApi onkostarApi;
|
||||||
|
|
||||||
|
@Mock
|
||||||
|
private SettingsService settingsService;
|
||||||
|
|
||||||
@Mock
|
@Mock
|
||||||
private FormService formService;
|
private FormService formService;
|
||||||
|
|
||||||
@ -29,7 +33,7 @@ public class PluginConfigurationTest {
|
|||||||
|
|
||||||
@Test
|
@Test
|
||||||
void testShouldReturnTherapieplanServiceFactory() {
|
void testShouldReturnTherapieplanServiceFactory() {
|
||||||
var actual = this.configuration.therapieplanServiceFactory(onkostarApi, formService);
|
var actual = this.configuration.therapieplanServiceFactory(onkostarApi, settingsService, formService);
|
||||||
assertThat(actual).isInstanceOf(TherapieplanServiceFactory.class);
|
assertThat(actual).isInstanceOf(TherapieplanServiceFactory.class);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
@ -1,9 +1,6 @@
|
|||||||
package DNPM.config;
|
package DNPM.config;
|
||||||
|
|
||||||
import DNPM.services.DefaultTherapieplanService;
|
import DNPM.services.*;
|
||||||
import DNPM.services.FormService;
|
|
||||||
import DNPM.services.MultipleMtbTherapieplanService;
|
|
||||||
import DNPM.services.TherapieplanServiceFactory;
|
|
||||||
import de.itc.onkostar.api.IOnkostarApi;
|
import de.itc.onkostar.api.IOnkostarApi;
|
||||||
import org.junit.jupiter.api.BeforeEach;
|
import org.junit.jupiter.api.BeforeEach;
|
||||||
import org.junit.jupiter.api.Test;
|
import org.junit.jupiter.api.Test;
|
||||||
@ -12,8 +9,6 @@ import org.mockito.Mock;
|
|||||||
import org.mockito.junit.jupiter.MockitoExtension;
|
import org.mockito.junit.jupiter.MockitoExtension;
|
||||||
|
|
||||||
import static org.assertj.core.api.Assertions.assertThat;
|
import static org.assertj.core.api.Assertions.assertThat;
|
||||||
import static org.mockito.ArgumentMatchers.anyString;
|
|
||||||
import static org.mockito.Mockito.doAnswer;
|
|
||||||
import static org.mockito.Mockito.when;
|
import static org.mockito.Mockito.when;
|
||||||
|
|
||||||
@ExtendWith(MockitoExtension.class)
|
@ExtendWith(MockitoExtension.class)
|
||||||
@ -25,31 +20,19 @@ public class TherapieplanServiceFactoryTest {
|
|||||||
@Mock
|
@Mock
|
||||||
private FormService formService;
|
private FormService formService;
|
||||||
|
|
||||||
|
@Mock
|
||||||
|
private SettingsService settingsService;
|
||||||
|
|
||||||
private TherapieplanServiceFactory therapieplanServiceFactory;
|
private TherapieplanServiceFactory therapieplanServiceFactory;
|
||||||
|
|
||||||
@BeforeEach
|
@BeforeEach
|
||||||
void setup() {
|
void setup() {
|
||||||
this.therapieplanServiceFactory = new TherapieplanServiceFactory(onkostarApi, formService);
|
this.therapieplanServiceFactory = new TherapieplanServiceFactory(onkostarApi, settingsService, formService);
|
||||||
}
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
void testShouldReturnDefaultTherapieplanServiceIfSettingIsFalse() {
|
void testShouldReturnDefaultTherapieplanServiceIfSettingIsFalse() {
|
||||||
doAnswer(invocationOnMock -> {
|
when(settingsService.multipleMtbsInMtbEpisode()).thenReturn(false);
|
||||||
var settingName = invocationOnMock.getArgument(0, String.class);
|
|
||||||
if (settingName.equals("mehrere_mtb_in_mtbepisode")) {
|
|
||||||
return "false";
|
|
||||||
}
|
|
||||||
return null;
|
|
||||||
}).when(onkostarApi).getGlobalSetting(anyString());
|
|
||||||
|
|
||||||
var actual = this.therapieplanServiceFactory.currentUsableInstance();
|
|
||||||
|
|
||||||
assertThat(actual).isInstanceOf(DefaultTherapieplanService.class);
|
|
||||||
}
|
|
||||||
|
|
||||||
@Test
|
|
||||||
void testShouldReturnDefaultTherapieplanServiceIfNoSetting() {
|
|
||||||
when(onkostarApi.getGlobalSetting(anyString())).thenReturn(null);
|
|
||||||
|
|
||||||
var actual = this.therapieplanServiceFactory.currentUsableInstance();
|
var actual = this.therapieplanServiceFactory.currentUsableInstance();
|
||||||
|
|
||||||
@ -58,13 +41,7 @@ public class TherapieplanServiceFactoryTest {
|
|||||||
|
|
||||||
@Test
|
@Test
|
||||||
void testShouldReturnMultipleMtbTherapieplanServiceIfSettingIsTrue() {
|
void testShouldReturnMultipleMtbTherapieplanServiceIfSettingIsTrue() {
|
||||||
doAnswer(invocationOnMock -> {
|
when(settingsService.multipleMtbsInMtbEpisode()).thenReturn(true);
|
||||||
var settingName = invocationOnMock.getArgument(0, String.class);
|
|
||||||
if (settingName.equals("mehrere_mtb_in_mtbepisode")) {
|
|
||||||
return "true";
|
|
||||||
}
|
|
||||||
return null;
|
|
||||||
}).when(onkostarApi).getGlobalSetting(anyString());
|
|
||||||
|
|
||||||
var actual = this.therapieplanServiceFactory.currentUsableInstance();
|
var actual = this.therapieplanServiceFactory.currentUsableInstance();
|
||||||
|
|
||||||
|
58
src/test/java/DNPM/services/SettingsServiceTest.java
Normal file
58
src/test/java/DNPM/services/SettingsServiceTest.java
Normal file
@ -0,0 +1,58 @@
|
|||||||
|
package DNPM.services;
|
||||||
|
|
||||||
|
import DNPM.database.SettingsRepository;
|
||||||
|
import de.itc.db.dnpm.Setting;
|
||||||
|
import org.junit.jupiter.api.BeforeEach;
|
||||||
|
import org.junit.jupiter.api.Test;
|
||||||
|
import org.junit.jupiter.api.extension.ExtendWith;
|
||||||
|
import org.mockito.Mock;
|
||||||
|
import org.mockito.junit.jupiter.MockitoExtension;
|
||||||
|
|
||||||
|
import static org.assertj.core.api.Assertions.assertThat;
|
||||||
|
import static org.mockito.Mockito.anyString;
|
||||||
|
import static org.mockito.Mockito.doAnswer;
|
||||||
|
|
||||||
|
@ExtendWith(MockitoExtension.class)
|
||||||
|
public class SettingsServiceTest {
|
||||||
|
|
||||||
|
@Mock
|
||||||
|
private SettingsRepository settingsRepository;
|
||||||
|
|
||||||
|
private SettingsService service;
|
||||||
|
|
||||||
|
@BeforeEach
|
||||||
|
void setUp() {
|
||||||
|
this.service = new SettingsService(settingsRepository);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void shouldReturnSID() {
|
||||||
|
doAnswer(invocationOnMock -> {
|
||||||
|
var name = invocationOnMock.getArgument(0, String.class);
|
||||||
|
if (null != name && name.equals("SID")) {
|
||||||
|
return new Setting(1L, "SID", "12345");
|
||||||
|
}
|
||||||
|
return null;
|
||||||
|
}).when(settingsRepository).findByName(anyString());
|
||||||
|
|
||||||
|
var actual = service.getSID();
|
||||||
|
assertThat(actual).isPresent();
|
||||||
|
assertThat(actual.get()).isEqualTo("12345");
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void shouldReturnSIDByName() {
|
||||||
|
doAnswer(invocationOnMock -> {
|
||||||
|
var name = invocationOnMock.getArgument(0, String.class);
|
||||||
|
if (null != name && name.equals("SID")) {
|
||||||
|
return new Setting(1L, "SID", "12345");
|
||||||
|
}
|
||||||
|
return null;
|
||||||
|
}).when(settingsRepository).findByName(anyString());
|
||||||
|
|
||||||
|
var actual = service.getSetting("SID");
|
||||||
|
assertThat(actual).isPresent();
|
||||||
|
assertThat(actual.get()).isEqualTo("12345");
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
112
src/test/java/DNPM/services/mtb/DefaultMtbServiceTest.java
Normal file
112
src/test/java/DNPM/services/mtb/DefaultMtbServiceTest.java
Normal file
@ -0,0 +1,112 @@
|
|||||||
|
package DNPM.services.mtb;
|
||||||
|
|
||||||
|
import DNPM.services.SettingsService;
|
||||||
|
import de.itc.onkostar.api.IOnkostarApi;
|
||||||
|
import de.itc.onkostar.api.Item;
|
||||||
|
import de.itc.onkostar.api.Procedure;
|
||||||
|
import org.junit.jupiter.api.BeforeEach;
|
||||||
|
import org.junit.jupiter.api.Test;
|
||||||
|
import org.junit.jupiter.api.extension.ExtendWith;
|
||||||
|
import org.mockito.Mock;
|
||||||
|
import org.mockito.junit.jupiter.MockitoExtension;
|
||||||
|
|
||||||
|
import java.time.Instant;
|
||||||
|
import java.util.Arrays;
|
||||||
|
import java.util.Date;
|
||||||
|
import java.util.List;
|
||||||
|
import java.util.Optional;
|
||||||
|
|
||||||
|
import static org.assertj.core.api.Assertions.assertThat;
|
||||||
|
import static org.mockito.Mockito.when;
|
||||||
|
|
||||||
|
@ExtendWith(MockitoExtension.class)
|
||||||
|
public class DefaultMtbServiceTest {
|
||||||
|
|
||||||
|
private IOnkostarApi onkostarApi;
|
||||||
|
|
||||||
|
private SettingsService settingsService;
|
||||||
|
|
||||||
|
private DefaultMtbService service;
|
||||||
|
|
||||||
|
@BeforeEach
|
||||||
|
void setup(
|
||||||
|
@Mock IOnkostarApi onkostarApi,
|
||||||
|
@Mock SettingsService settingsService
|
||||||
|
) {
|
||||||
|
this.onkostarApi = onkostarApi;
|
||||||
|
this.settingsService = settingsService;
|
||||||
|
this.service = new DefaultMtbService(settingsService);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void testShouldReturnMtbProtocolForDefaultImplementation() {
|
||||||
|
when(settingsService.getSID()).thenReturn(Optional.of("12345"));
|
||||||
|
when(settingsService.multipleMtbsInMtbEpisode()).thenReturn(false);
|
||||||
|
|
||||||
|
var procedure1 = new Procedure(onkostarApi);
|
||||||
|
procedure1.setFormName("OS.Tumorkonferenz");
|
||||||
|
procedure1.setStartDate(Date.from(Instant.parse("2023-01-01T00:00:00Z")));
|
||||||
|
procedure1.setValue("Fragestellung", new Item("Fragestellung", "Test ok?"));
|
||||||
|
procedure1.setValue("Empfehlung", new Item("Empfehlung", "Rerun Test if not ok!"));
|
||||||
|
|
||||||
|
var procedures = List.of(
|
||||||
|
procedure1
|
||||||
|
);
|
||||||
|
|
||||||
|
var actual = service.getProtocol(procedures);
|
||||||
|
|
||||||
|
assertThat(actual).isEqualTo("Fragestellung:\nTest ok?\n\nEmpfehlung:\nRerun Test if not ok!");
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void testShouldReturnEmptyMtbProtocolForMultipleMtb() {
|
||||||
|
when(settingsService.getSID()).thenReturn(Optional.of("12345"));
|
||||||
|
when(settingsService.multipleMtbsInMtbEpisode()).thenReturn(true);
|
||||||
|
|
||||||
|
var procedure1 = new Procedure(onkostarApi);
|
||||||
|
procedure1.setFormName("OS.Tumorkonferenz");
|
||||||
|
procedure1.setStartDate(Date.from(Instant.parse("2023-01-01T00:00:00Z")));
|
||||||
|
procedure1.setValue("Fragestellung", new Item("Fragestellung", "Test ok?"));
|
||||||
|
procedure1.setValue("Empfehlung", new Item("Empfehlung", "Rerun Test if not ok!"));
|
||||||
|
|
||||||
|
var procedures = List.of(
|
||||||
|
procedure1
|
||||||
|
);
|
||||||
|
|
||||||
|
var actual = service.getProtocol(procedures);
|
||||||
|
|
||||||
|
assertThat(actual).isEmpty();
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void testShouldReturnMtbProtocolForSID20119() {
|
||||||
|
when(settingsService.getSID()).thenReturn(Optional.of("20119"));
|
||||||
|
when(settingsService.multipleMtbsInMtbEpisode()).thenReturn(true);
|
||||||
|
|
||||||
|
var procedure1 = new Procedure(onkostarApi);
|
||||||
|
procedure1.setFormName("OS.Tumorkonferenz.VarianteUKW");
|
||||||
|
procedure1.setStartDate(Date.from(Instant.parse("2023-02-01T00:00:00Z")));
|
||||||
|
procedure1.setValue("Fragestellung", new Item("Fragestellung", "Test immer noch ok?"));
|
||||||
|
procedure1.setValue("Empfehlung", new Item("Empfehlung", "Do not rerun Test if ok!"));
|
||||||
|
|
||||||
|
var procedure2 = new Procedure(onkostarApi);
|
||||||
|
procedure2.setFormName("OS.Tumorkonferenz.VarianteUKW");
|
||||||
|
procedure2.setStartDate(Date.from(Instant.parse("2023-01-01T00:00:00Z")));
|
||||||
|
procedure2.setValue("Fragestellung", new Item("Fragestellung", "Test ok?"));
|
||||||
|
procedure2.setValue("Empfehlung", new Item("Empfehlung", "Rerun Test if not ok!"));
|
||||||
|
|
||||||
|
|
||||||
|
var procedures = Arrays.asList(
|
||||||
|
procedure1,
|
||||||
|
procedure2
|
||||||
|
);
|
||||||
|
|
||||||
|
var actual = service.getProtocol(procedures);
|
||||||
|
|
||||||
|
assertThat(actual).isEqualTo(
|
||||||
|
"Fragestellung:\nTest ok?\n\nEmpfehlung:\nRerun Test if not ok!\n\n" +
|
||||||
|
"Fragestellung:\nTest immer noch ok?\n\nEmpfehlung:\nDo not rerun Test if ok!"
|
||||||
|
);
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
Reference in New Issue
Block a user