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Issue #11: Service zum Generieren des Protokollauszugs aus MTBs

Implementierungen vorhanden für die Formulare:
* OS.Tumorkonferenz
* OS.Tumorkonferenz.VarianteUKW
This commit is contained in:
2023-03-20 16:43:07 +01:00
parent ef5c91a352
commit 887221d5ae
6 changed files with 243 additions and 0 deletions

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package DNPM.services.mtb;
import DNPM.services.SettingsService;
import de.itc.onkostar.api.Procedure;
import java.util.List;
public class DefaultMtbService implements MtbService {
private final SettingsService settingsService;
public DefaultMtbService(final SettingsService settingsService) {
this.settingsService = settingsService;
}
@Override
public String getProtocol(List<Procedure> procedures) {
ProcedureToProtocolMapper mapper = null;
var sid = settingsService.getSID();
if (sid.isPresent()) {
switch (sid.get()) {
case "20119":
mapper = new OsTumorkonferenzVarianteUkwToProtocolMapper();
default:
if (!settingsService.multipleMtbsInMtbEpisode()) {
mapper = new OsTumorkonferenzToProtocolMapper();
}
}
}
if (null == mapper) {
return "";
}
return mapper.apply(procedures).orElse("");
}
}

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package DNPM.services.mtb;
import de.itc.onkostar.api.Procedure;
import java.util.List;
public interface MtbService {
String getProtocol(List<Procedure> procedures);
}

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package DNPM.services.mtb;
import de.itc.onkostar.api.Procedure;
import java.util.List;
import java.util.Optional;
public class OsTumorkonferenzToProtocolMapper implements ProcedureToProtocolMapper {
@Override
public Optional<String> apply(List<Procedure> procedures) {
assert(procedures.size() == 1);
var procedure = procedures.get(0);
assert(procedure.getFormName().equals("OS.Tumorkonferenz"));
var fragestellung = procedure.getValue("Fragestellung");
var empfehlung = procedure.getValue("Empfehlung");
if (
null != fragestellung && !fragestellung.getString().isBlank()
&& null != empfehlung && !empfehlung.getString().isBlank()
) {
return Optional.of(String.format("%s\n%s", fragestellung.getString(), empfehlung.getString()));
} else if (null != fragestellung && !fragestellung.getString().isBlank()) {
return Optional.of(fragestellung.getString());
} else if (null != empfehlung && !empfehlung.getString().isBlank()) {
return Optional.of(empfehlung.getString());
}
return Optional.empty();
}
}

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package DNPM.services.mtb;
import de.itc.onkostar.api.Procedure;
import java.util.Comparator;
import java.util.List;
import java.util.Optional;
import java.util.stream.Collectors;
public class OsTumorkonferenzVarianteUkwToProtocolMapper implements ProcedureToProtocolMapper {
@Override
public Optional<String> apply(List<Procedure> procedures) {
procedures.forEach(procedure -> {
assert (procedure.getFormName().equals("OS.Tumorkonferenz.VarianteUKW"));
});
procedures.sort(Comparator.comparing(Procedure::getStartDate));
var result = procedures.stream().map(procedure -> {
var fragestellung = procedure.getValue("Fragestellung");
var empfehlung = procedure.getValue("Empfehlung");
if (
null != fragestellung && !fragestellung.getString().isBlank()
&& null != empfehlung && !empfehlung.getString().isBlank()
) {
return String.format("%s\n%s", fragestellung.getString(), empfehlung.getString());
} else if (null != fragestellung && !fragestellung.getString().isBlank()) {
return fragestellung.getString();
} else if (null != empfehlung && !empfehlung.getString().isBlank()) {
return empfehlung.getString();
}
return "";
}).collect(Collectors.joining("\n"));
if (!result.isBlank()) {
return Optional.of(result);
}
return Optional.empty();
}
}

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package DNPM.services.mtb;
import de.itc.onkostar.api.Procedure;
import java.util.List;
import java.util.Optional;
import java.util.function.Function;
@FunctionalInterface
public interface ProcedureToProtocolMapper extends Function<List<Procedure>, Optional<String>> {}

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package DNPM.services.mtb;
import DNPM.services.SettingsService;
import de.itc.onkostar.api.IOnkostarApi;
import de.itc.onkostar.api.Item;
import de.itc.onkostar.api.Procedure;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
import org.mockito.Mock;
import org.mockito.junit.jupiter.MockitoExtension;
import java.time.Instant;
import java.util.Arrays;
import java.util.Date;
import java.util.List;
import java.util.Optional;
import static org.assertj.core.api.Assertions.assertThat;
import static org.mockito.Mockito.when;
@ExtendWith(MockitoExtension.class)
public class DefaultMtbServiceTest {
@Mock
private IOnkostarApi onkostarApi;
@Mock
private SettingsService settingsService;
private DefaultMtbService service;
@BeforeEach
void setup() {
this.service = new DefaultMtbService(settingsService);
}
@Test
void testShouldReturnMtbProtocolForDefaultImplementation() {
when(settingsService.getSID()).thenReturn(Optional.of("12345"));
when(settingsService.multipleMtbsInMtbEpisode()).thenReturn(false);
var procedure1 = new Procedure(onkostarApi);
procedure1.setFormName("OS.Tumorkonferenz");
procedure1.setStartDate(Date.from(Instant.parse("2023-01-01T00:00:00Z")));
procedure1.setValue("Fragestellung", new Item("Fragestellung", "Test ok?"));
procedure1.setValue("Empfehlung", new Item("Empfehlung", "Rerun Test if not ok!"));
var procedures = List.of(
procedure1
);
var actual = service.getProtocol(procedures);
assertThat(actual).isEqualTo("Test ok?\nRerun Test if not ok!");
}
@Test
void testShouldReturnEmptyMtbProtocolForMultipleMtb() {
when(settingsService.getSID()).thenReturn(Optional.of("12345"));
when(settingsService.multipleMtbsInMtbEpisode()).thenReturn(true);
var procedure1 = new Procedure(onkostarApi);
procedure1.setFormName("OS.Tumorkonferenz");
procedure1.setStartDate(Date.from(Instant.parse("2023-01-01T00:00:00Z")));
procedure1.setValue("Fragestellung", new Item("Fragestellung", "Test ok?"));
procedure1.setValue("Empfehlung", new Item("Empfehlung", "Rerun Test if not ok!"));
var procedures = List.of(
procedure1
);
var actual = service.getProtocol(procedures);
assertThat(actual).isEmpty();
}
@Test
void testShouldReturnMtbProtocolForSID20119() {
when(settingsService.getSID()).thenReturn(Optional.of("20119"));
when(settingsService.multipleMtbsInMtbEpisode()).thenReturn(true);
var procedure1 = new Procedure(onkostarApi);
procedure1.setFormName("OS.Tumorkonferenz.VarianteUKW");
procedure1.setStartDate(Date.from(Instant.parse("2023-02-01T00:00:00Z")));
procedure1.setValue("Fragestellung", new Item("Fragestellung", "Test immer noch ok?"));
procedure1.setValue("Empfehlung", new Item("Empfehlung", "Do not rerun Test if ok!"));
var procedure2 = new Procedure(onkostarApi);
procedure2.setFormName("OS.Tumorkonferenz.VarianteUKW");
procedure2.setStartDate(Date.from(Instant.parse("2023-01-01T00:00:00Z")));
procedure2.setValue("Fragestellung", new Item("Fragestellung", "Test ok?"));
procedure2.setValue("Empfehlung", new Item("Empfehlung", "Rerun Test if not ok!"));
var procedures = Arrays.asList(
procedure1,
procedure2
);
var actual = service.getProtocol(procedures);
assertThat(actual).isEqualTo(
"Test ok?\nRerun Test if not ok!\nTest immer noch ok?\nDo not rerun Test if ok!"
);
}
}