pcvolkmer/onkostar-plugin-dnpm
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Code Issues Activity

Issue #28: Verwende erforderliche Informationen ohne Zusammenfassung

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This commit is contained in:
Paul-Christian Volkmer
2023-05-09 08:50:47 +02:00
parent 3afe109494
commit c45dc8f5df
2 changed files with 144 additions and 8 deletions
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49
src/main/java/DNPM/dto/Variant.java
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@ -7,22 +7,46 @@ import java.util.Optional;
public class Variant {
private final Integer id;
private final String shortDescription;
private final String ergebnis;
private final String gen;
private final String exon;
private final String pathogenitaetsklasse;
private Variant(
final int id,
final String shortDescription
final String ergebnis,
final String gen,
final String exon,
final String pathogenitaetsklasse
) {
this.id = id;
this.shortDescription = shortDescription.trim();
this.ergebnis = ergebnis;
this.gen = gen;
this.exon = exon;
this.pathogenitaetsklasse = pathogenitaetsklasse;
}
public Integer getId() {
return id;
}
public String getShortDescription() {
return shortDescription;
public String getErgebnis() {
return ergebnis;
}
public String getGen() {
return gen;
}
public String getExon() {
return exon;
}
public String getPathogenitaetsklasse() {
return pathogenitaetsklasse;
}
public static Optional<Variant> fromProcedure(Procedure procedure) {
@ -43,21 +67,30 @@ public class Variant {
return Optional.of(
new Variant(
procedure.getId(),
String.format("Einfache Variante: %s, %s, %s", gene.getString(), exon.getString(), pathogenitaetsklasse.getString())
"Einfache Variante",
gene.getString(),
exon.getString(),
pathogenitaetsklasse.getString()
)
);
} else if (ergebnis.getString().equals("CNV")) {
return Optional.of(
new Variant(
procedure.getId(),
String.format("Copy Number Variation: %s, %s, %s", gene.getString(), exon.getString(), pathogenitaetsklasse.getString())
"Copy Number Variation",
gene.getString(),
exon.getString(),
pathogenitaetsklasse.getString()
)
);
} else if (ergebnis.getString().equals("F")) {
return Optional.of(
new Variant(
procedure.getId(),
String.format("Fusion: %s, %s, %s", gene.getString(), exon.getString(), pathogenitaetsklasse.getString())
"Fusion",
gene.getString(),
exon.getString(),
pathogenitaetsklasse.getString()
)
);
} else {