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https://github.com/pcvolkmer/osc-variant.git
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Add profile file parser
This commit is contained in:
parent
2b0d1a5bd9
commit
8902a47903
54
Cargo.lock
generated
54
Cargo.lock
generated
@ -8,6 +8,12 @@ version = "1.0.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "41ed9a86bf92ae6580e0a31281f65a1b1d867c0cc68d5346e2ae128dddfa6a7d"
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[[package]]
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name = "autocfg"
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version = "1.1.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa"
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[[package]]
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name = "bitflags"
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version = "1.3.2"
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@ -54,12 +60,34 @@ version = "0.5.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "2da6da31387c7e4ef160ffab6d5e7f00c42626fe39aea70a7b0f1773f7dd6c1b"
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[[package]]
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name = "hashbrown"
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version = "0.12.3"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888"
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[[package]]
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name = "heck"
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version = "0.4.1"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8"
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[[package]]
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name = "indexmap"
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version = "1.9.3"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "bd070e393353796e801d209ad339e89596eb4c8d430d18ede6a1cced8fafbd99"
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dependencies = [
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"autocfg",
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"hashbrown",
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]
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[[package]]
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name = "itoa"
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version = "1.0.6"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "453ad9f582a441959e5f0d088b02ce04cfe8d51a8eaf077f12ac6d3e94164ca6"
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[[package]]
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name = "memchr"
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version = "2.5.0"
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@ -79,6 +107,7 @@ dependencies = [
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"clap",
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"quick-xml",
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"serde",
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"serde_yaml",
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"xml-rs",
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]
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@ -110,6 +139,12 @@ dependencies = [
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"proc-macro2",
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]
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[[package]]
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name = "ryu"
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version = "1.0.13"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "f91339c0467de62360649f8d3e185ca8de4224ff281f66000de5eb2a77a79041"
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[[package]]
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name = "serde"
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version = "1.0.163"
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@ -130,6 +165,19 @@ dependencies = [
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"syn",
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]
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[[package]]
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name = "serde_yaml"
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version = "0.9.21"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "d9d684e3ec7de3bf5466b32bd75303ac16f0736426e5a4e0d6e489559ce1249c"
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dependencies = [
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"indexmap",
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"itoa",
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"ryu",
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"serde",
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"unsafe-libyaml",
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]
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[[package]]
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name = "syn"
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version = "2.0.18"
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@ -147,6 +195,12 @@ version = "1.0.9"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "b15811caf2415fb889178633e7724bad2509101cde276048e013b9def5e51fa0"
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[[package]]
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name = "unsafe-libyaml"
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version = "0.2.8"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "1865806a559042e51ab5414598446a5871b561d21b6764f2eabb0dd481d880a6"
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[[package]]
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name = "xml-rs"
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version = "0.8.13"
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@ -8,5 +8,6 @@ edition = "2021"
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[dependencies]
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clap = { version = "4.3", features = ["std", "help", "usage", "derive", "error-context" ], default-features = false }
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serde = { version = "1.0", features = ["derive"] }
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serde_yaml = "0.9"
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quick-xml = { version = "0.28", features = ["escape-html", "serialize"], default-features=false }
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xml-rs = "0.8"
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@ -35,6 +35,7 @@ use serde::Serialize;
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use crate::model::onkostar_editor::OnkostarEditor;
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mod model;
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mod profile;
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#[derive(Parser)]
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#[command(author, version, about, long_about = None)]
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@ -45,6 +46,11 @@ struct Cli {
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help = "Eingabedatei"
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)]
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input: String,
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#[arg(
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long = "profile",
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help = "Profildatei (Optional)"
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)]
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profile: Option<String>,
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#[arg(
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long = "output",
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help = "Ausgabedatei (Optional)"
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95
src/profile.rs
Normal file
95
src/profile.rs
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@ -0,0 +1,95 @@
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/*
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* MIT License
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*
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* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken
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*
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* Permission is hereby granted, free of charge, to any person obtaining a copy
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* of this software and associated documentation files (the "Software"), to deal
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* in the Software without restriction, including without limitation the rights
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* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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* copies of the Software, and to permit persons to whom the Software is
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* furnished to do so, subject to the following conditions:
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*
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* The above copyright notice and this permission notice shall be included in all
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* copies or substantial portions of the Software.
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*
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* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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* SOFTWARE.
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*/
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use std::str::FromStr;
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use serde::Deserialize;
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#[derive(Deserialize)]
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struct Profile {
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forms: Vec<Form>
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}
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impl FromStr for Profile {
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type Err = String;
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fn from_str(s: &str) -> Result<Self, Self::Err> {
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match serde_yaml::from_str::<Profile>(s) {
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Ok(profile) => Ok(profile),
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Err(err) => Err(err.to_string())
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}
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}
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}
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#[derive(Deserialize)]
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struct Form {
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name: String,
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fields: Vec<FieldChanges>
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}
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#[derive(Deserialize)]
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struct FieldChanges {
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name: String,
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referenced_data_form: Option<String>
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}
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#[cfg(test)]
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mod tests {
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use std::str::FromStr;
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use crate::profile::Profile;
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#[test]
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fn should_deserialize_profile() {
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let content =
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"forms:
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- name: 'DNPM Therapieplan'
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fields:
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- name: ref_first_mtb
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referenced_data_form: 'OS.Tumorkonferenz.VarianteUKW'
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";
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match Profile::from_str(content) {
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Ok(profile) => {
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assert_eq!(profile.forms.len(), 1);
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assert_eq!(profile.forms[0].name, "DNPM Therapieplan");
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assert_eq!(profile.forms[0].fields.len(), 1);
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assert_eq!(profile.forms[0].fields[0].name, "ref_first_mtb");
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assert_eq!(profile.forms[0].fields[0].referenced_data_form, Some("OS.Tumorkonferenz.VarianteUKW".to_string()));
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},
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Err(e) => panic!("Cannot deserialize profile: {}", e)
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}
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}
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#[test]
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fn should_not_deserialize_bad_profile() {
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let content =
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"forms:
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- name: 'DNPM Therapieplan'
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# incomplete profile ...
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";
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let actual = Profile::from_str(content);
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assert!(actual.is_err());
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}
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}
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