mirror of
https://github.com/pcvolkmer/bzkf-rwdp-check.git
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140 lines
5.9 KiB
SQL
140 lines
5.9 KiB
SQL
/*
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* This file is part of bzkf-rwdp-check
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*
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* Copyright (C) 2024 Comprehensive Cancer Center Mainfranken and contributors.
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*
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* This program is free software; you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation; either version 2 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License along
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* with this program; if not, write to the Free Software Foundation, Inc.,
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* 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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*/
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SELECT CASE
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WHEN condcodingcode LIKE 'C00%'
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OR condcodingcode LIKE 'C01%'
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OR condcodingcode LIKE 'C02%'
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OR condcodingcode LIKE 'C03%'
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OR condcodingcode LIKE 'C04%'
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OR condcodingcode LIKE 'C05%'
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OR condcodingcode LIKE 'C06%'
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OR condcodingcode LIKE 'C07%'
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OR condcodingcode LIKE 'C08%'
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OR condcodingcode LIKE 'C09%'
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OR condcodingcode LIKE 'C10%'
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OR condcodingcode LIKE 'C11%'
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OR condcodingcode LIKE 'C12%'
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OR condcodingcode LIKE 'C13%'
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OR condcodingcode LIKE 'C14%' THEN 'C00-C14'
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WHEN condcodingcode LIKE 'C15%' THEN 'C15'
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WHEN condcodingcode LIKE 'C16%' THEN 'C16'
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WHEN condcodingcode LIKE 'C18%'
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OR condcodingcode LIKE 'C19%'
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OR condcodingcode LIKE 'C20%'
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OR condcodingcode LIKE 'C21%' THEN 'C18-C21'
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WHEN condcodingcode LIKE 'C22%' THEN 'C22'
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WHEN condcodingcode LIKE 'C23%'
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OR condcodingcode LIKE 'C24%' THEN 'C23-C24'
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WHEN condcodingcode LIKE 'C25%' THEN 'C25'
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WHEN condcodingcode LIKE 'C32%' THEN 'C32'
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WHEN condcodingcode LIKE 'C33%'
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OR condcodingcode LIKE 'C34%' THEN 'C33-C34'
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WHEN condcodingcode LIKE 'C43%' THEN 'C43'
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WHEN condcodingcode LIKE 'C50%'
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OR condcodingcode LIKE 'D05%' THEN 'C50, D05'
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WHEN condcodingcode LIKE 'C53%'
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OR condcodingcode LIKE 'D06%' THEN 'C53, D06'
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WHEN condcodingcode LIKE 'C54%'
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OR condcodingcode LIKE 'C55%' THEN 'C54-C55'
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WHEN condcodingcode LIKE 'C56%'
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OR condcodingcode = 'D39.1' THEN 'C56, D39.1'
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WHEN condcodingcode LIKE 'C61%' THEN 'C61'
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WHEN condcodingcode LIKE 'C62%' THEN 'C62'
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WHEN condcodingcode LIKE 'C64%' THEN 'C64'
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WHEN condcodingcode LIKE 'C67%'
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OR condcodingcode = 'D09.0'
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OR condcodingcode = 'D41.4' THEN 'C67, D09.0, D41.4'
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WHEN condcodingcode LIKE 'C70%'
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OR condcodingcode LIKE 'C71%'
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OR condcodingcode LIKE 'C72%' THEN 'C70-C72'
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WHEN condcodingcode LIKE 'C73%' THEN 'C73'
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WHEN condcodingcode LIKE 'C81%' THEN 'C81'
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WHEN condcodingcode LIKE 'C82%'
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OR condcodingcode LIKE 'C83%'
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OR condcodingcode LIKE 'C84%'
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OR condcodingcode LIKE 'C85%'
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OR condcodingcode LIKE 'C86%'
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OR condcodingcode LIKE 'C87%'
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OR condcodingcode LIKE 'C88%'
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OR condcodingcode LIKE 'C96%' THEN 'C82-C88, C96'
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WHEN condcodingcode LIKE 'C90%' THEN 'C90'
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WHEN condcodingcode LIKE 'C91%'
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OR condcodingcode LIKE 'C92%'
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OR condcodingcode LIKE 'C93%'
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OR condcodingcode LIKE 'C94%'
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OR condcodingcode LIKE 'C95%' THEN 'C91-C95'
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ELSE 'Other'
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END AS ICD10_GROUP,
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COUNT(*) as COUNT
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FROM (
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SELECT DISTINCT
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EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID') AS pid,
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lme.versionsnummer,
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SHA2(CONCAT('https://fhir.diz.uk-erlangen.de/identifiers/onkostar-xml-condition-id|', EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID'), 'condition', EXTRACTVALUE(lme.xml_daten, '//Diagnose/@Tumor_ID')), 256) AS cond_id,
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SUBSTRING_INDEX(EXTRACTVALUE(lm.xml_daten, '//Primaertumor_ICD_Code'), ' ', 1) AS condcodingcode,
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SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lm.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) AS diagnosejahr
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FROM lkr_meldung_export lme
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JOIN lkr_meldung lm ON (lm.id = lme.lkr_meldung AND lme.typ <> '-1' AND lm.extern <= :include_extern)
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WHERE lme.xml_daten LIKE '%ICD_Version%'
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AND SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lm.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) = :year
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AND (lm.xml_daten LIKE '%<cTNM%' OR lm.xml_daten LIKE '%<pTNM%' OR lm.xml_daten LIKE '%<Menge_Histologie>%' OR lm.xml_daten LIKE '%<Menge_Weitere_Klassifikation>%')
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AND (lm.xml_daten NOT LIKE '%histologie_zytologie%' OR 1 = :include_histo_zyto)
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) o1
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LEFT OUTER JOIN (
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SELECT DISTINCT
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SHA2(CONCAT('https://fhir.diz.uk-erlangen.de/identifiers/onkostar-xml-condition-id|', EXTRACTVALUE(lme.xml_daten, '//Patienten_Stammdaten/@Patient_ID'), 'condition', EXTRACTVALUE(lme.xml_daten, '//Diagnose/@Tumor_ID')), 256) AS cond_id,
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CASE WHEN le.exportiert_am < :ignore_exports_since THEN MAX(versionsnummer) ELSE ~0 END AS max_version
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FROM lkr_meldung_export lme
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JOIN lkr_export le ON (lme.lkr_export = le.id)
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WHERE SUBSTRING_INDEX(SUBSTRING_INDEX(EXTRACTVALUE(lme.xml_daten, '//Diagnosedatum'), ' ', 1), '.', -1) = :year
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GROUP BY cond_id ORDER BY cond_id
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) o2
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ON (o1.cond_id = o2.cond_id AND o1.versionsnummer < max_version)
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WHERE diagnosejahr = :year AND o2.cond_id IS NULL
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GROUP BY ICD10_GROUP; |