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fix: removed gaps system from GPAS pseudonym value. Also added clean up method, which will replace filename invalid characters witch '_'. (#11)

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jlidke 2023-09-04 15:41:22 +02:00 committed by GitHub
parent 2f32834de0
commit bf8f87b261
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2 changed files with 22 additions and 1 deletions
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16
src/main/java/dev/dnpm/etl/processor/pseudonym/GpasPseudonymGenerator.java
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@ -127,7 +127,21 @@ public class GpasPseudonymGenerator implements Generator {
.orElseGet(ParametersParameterComponent::new).getValue();
// pseudonym
return identifier.getSystem() + "|" + identifier.getValue();
return sanitizeValue(identifier.getValue());
}
/**
* Allow only filename friendly values
*
* @param psnValue GAPS pseudonym value
* @return cleaned up value
*/
public static String sanitizeValue(String psnValue) {
// pattern to match forbidden characters
String forbiddenCharsRegex = "[\\\\/:*?\"<>|;]";
// Replace all forbidden characters with underscores
return psnValue.replaceAll(forbiddenCharsRegex, "_");
}

7
src/test/kotlin/dev/dnpm/etl/processor/pseudonym/PseudonymizeServiceTest.kt
View File

@ -70,6 +70,13 @@ class PseudonymizeServiceTest {
assertThat(mtbFile.patient.id).isEqualTo("123")
}
@Test
fun sanitizeFileName(@Mock generator: GpasPseudonymGenerator) {
val result= GpasPseudonymGenerator.sanitizeValue("l://a\\bs;1*2?3>")
assertThat(result).isEqualTo("l___a_bs_1_2_3_")
}
@Test
fun shouldUsePseudonymPrefixForBuiltin(@Mock generator: AnonymizingGenerator) {
doAnswer {