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mirror of https://github.com/pcvolkmer/etl-processor.git synced 2025-07-17 21:02:54 +00:00
Commit Graph

445 Commits

Author SHA1 Message Date
f5aff88758 fix: throw unexpected exception in case gaps returns other than 2xx Code 2025-07-17 11:29:55 +02:00
d34127701c chore: prepare test submission for genomDe 2025-07-17 11:13:36 +02:00
0475bed377 fix: add missing return statement 2025-07-17 09:36:08 +02:00
58e46b4736 fix: improved error response in case gPas is not available. 2025-07-17 09:14:06 +02:00
dc6a4c6cb9 refactor: moved consent evaluation to new ConsentProcessor.kt 2025-07-16 15:20:26 +02:00
38eec60189 refactor: moved consent processing from RequestProcessor.kt to new class ConsentProcessor.kt 2025-07-16 11:02:11 +02:00
600ac84ff3 fix: serialize fhir consent resources to string, object map 2025-07-15 17:05:26 +02:00
be592b1a2a refactor: simplify consent check 2025-07-11 14:57:23 +02:00
90d1378e12 fix: pseudonymize patient reference at embedded consent resources 2025-07-10 15:15:14 +02:00
cc525d3f4f fix: added missing genomeDe consent version and date; moved embedding consent resources into base class of GicsConsentService 2025-07-10 11:43:37 +02:00
48fd491278 fix: ICheckConsent get genomDE consent 2025-07-10 09:48:10 +02:00
3a2f37c34c fix: serialization issue with fhir consent and embedding research consent 2025-07-09 19:08:42 +02:00
357abe2b05 fix: endpoint gPas connection check 2025-07-09 18:00:06 +02:00
0e48207e20 test: update fake patient test data 2025-07-09 15:09:34 +02:00
d343b79caa fix: reimplement broad consent and genomDE consent check and embedding them into mtb data 2025-07-09 13:26:29 +02:00
f855df5e5f Merge branch 'refs/heads/master' into 63-check-consent-status 2025-06-26 14:37:00 +02:00
27f81ab30e fix: check consent unknownStateIsConsideredAsDecline = false 2025-06-26 14:16:14 +02:00
7543785116 chore: update to Spring Boot 3.5.3 (#116) 2025-06-26 01:14:07 +02:00
858189aa59 chore: data model changes (#117)
See: 3234082af1
2025-06-26 01:08:30 +02:00
9ad4466d69 feat: Broad Consent and GenomDE Consent can be embedded into mtb file 2025-06-25 16:16:35 +02:00
92f34459c3 chore: add HL7 Fhir serialization to ObjectMapper, so we can add FHIR consent resources to mtb file 2025-06-25 14:17:47 +02:00
60a1a351b1 refactor: rename method getIsConsentedParam -> getIsConsentedRequestParam 2025-06-24 12:45:22 +02:00
3686fd84a8 test: added test data -> gICS responses permit and deny 2025-06-24 12:03:28 +02:00
10cbf49777 feat: GicsConsentService can request consent resources from gICS based on domain (WIP) 2025-06-23 16:51:23 +02:00
1eefd1b27a Merge branch 'refs/heads/master' into 63-check-consent-status 2025-06-23 08:55:11 +02:00
17f4dc3512 chore: update to Spring Boot 3.5.0 (#115) 2025-06-08 20:02:16 +02:00
1dd601e8db chore: update dnpm mtb dto library (#113) 2025-05-30 22:36:38 +02:00
b748603c06 chore: update Spring Boot (#112) 2025-05-24 09:46:20 +02:00
d991f2a94d fix: added missing gIcs connection status to configuration view * also small refactoring 2025-05-14 09:22:59 +02:00
77df6f38ec refactor: renamed misleading enum value TtpConsentStatus.IGNORED to TtpConsentStatus.UNKNOWN_CHECK_FILE also impl. ConsentCheckedIgnored has been renamed to ConsentCheckFileBased - since consent status should never be ignored.
Also renamed ICheckConsent.isConsented ICheckConsent.getTtpConsentStatus since new method name is more descriptive.
2025-05-12 11:25:45 +02:00
542dc61811 fix: * Status prüfung gIcs überarbeitet.* Tests für GicsConsentService implementiert. * Überschreiben des MTB-File Consent, falls gICS aktiviert ist 2025-05-05 12:28:54 +02:00
2a28a4b3d4 doc: Konfiguration gICS Prüfung Einwilligungsstatus beschrieben 2025-05-05 12:25:44 +02:00
41d0a38c1d chore: some refactoring merge ttp consent status missing and rejected into one CONSENT_MISSING_OR_REJECTED 2025-04-28 15:10:20 +02:00
8517ba749c Merge branch 'master' into check-consent-status
# Conflicts:
#	build.gradle.kts
#	src/main/kotlin/dev/dnpm/etl/processor/config/AppConfiguration.kt
#	src/main/kotlin/dev/dnpm/etl/processor/input/MtbFileRestController.kt
#	src/main/kotlin/dev/dnpm/etl/processor/services/RequestProcessor.kt
#	src/test/kotlin/dev/dnpm/etl/processor/input/KafkaInputListenerTest.kt
#	src/test/kotlin/dev/dnpm/etl/processor/input/MtbFileRestControllerTest.kt
2025-04-28 12:33:39 +02:00
9074212575 chore: update .gitignore 2025-04-28 11:46:38 +02:00
b27670535f feat: check consent via gICS before process mtb file 2025-04-28 11:44:26 +02:00
b939b2bf57 chore: update Spring Boot (#111) 2025-04-26 11:18:40 +02:00
c6b37fda69 feat: support multiple request content types (#109) 2025-04-06 22:17:46 +02:00
8e3de6a220 feat: add pseudonymization for patient IDs (#107) 2025-04-06 14:42:09 +02:00
c5c553f817 refactor: move CustomMediaType into types.kt (#105) 2025-04-06 13:43:58 +02:00
7d97365aea feat: add endpoint for DNPM-Datamodel V2 using content negotiation (#104)
This simply adds an REST endpoint without proper implementation. The goal is to accept DNPM V2 JSON data.
2025-04-06 13:36:30 +02:00
48b1e62e22 feat: remove obsolete config params (#101) 2025-04-04 17:31:50 +02:00
66cc818755 feat: remove SSL-CA-Location config (#99) 2025-04-04 17:06:09 +02:00
9d4786fae3 refactor: update use of deprecated methods (#96) 2025-04-04 16:39:47 +02:00
b78dc3519b refactor: replace deprecated MockBean annotations (#95) 2025-04-04 16:13:07 +02:00
46015c5b66 chore: update to Spring Boot 3.4 2025-04-04 15:33:49 +02:00
a4d0b73d2b docs: update some information in README.md 2025-04-04 14:55:14 +02:00
9307fc0dad docs: change etl image and highlight important information 2025-04-04 14:49:37 +02:00
586d388e57 docs: add info about DNPM:DIP support 2025-04-04 14:36:30 +02:00
7ae34719fd feat: add new MTB endpoint path (#93) 2025-04-04 14:34:31 +02:00