pcvolkmer/mv64e-onkostar-data
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feat: use database id instead of einsendenummer

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Paul-Christian Volkmer
2025-07-06 20:21:50 +02:00
parent 5346798caf
commit 3d520042cb
1 changed files with 2 additions and 2 deletions
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4
src/main/java/dev/pcvolkmer/onco/datamapper/mapper/KpaMolekulargenetikDataMapper.java
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@@ -67,7 +67,7 @@ public class KpaMolekulargenetikDataMapper implements DataMapper<SomaticNgsRepor
.id(data.getString("id")) .id(data.getString("id"))
.patient(data.getPatientReference()) .patient(data.getPatientReference())
.issuedOn(data.getDate("datum")) .issuedOn(data.getDate("datum"))
.specimen(Reference.builder().id(data.getString("einsendenummer")).type("Specimen").build()) .specimen(Reference.builder().id(data.getString("id")).type("Specimen").build())
// TODO: OS.MolDiagSequenzierung kennt keine Unterscheidung zwischen 'genome-long-read' und 'genome-short-read'! -> OTHER // TODO: OS.MolDiagSequenzierung kennt keine Unterscheidung zwischen 'genome-long-read' und 'genome-short-read'! -> OTHER
.type(getNgsReportCoding(data.getString("artdersequenzierung"))) .type(getNgsReportCoding(data.getString("artdersequenzierung")))
.metadata(List.of(getNgsReportMetadata(data.getString("artdersequenzierung")))) .metadata(List.of(getNgsReportMetadata(data.getString("artdersequenzierung"))))
@@ -103,7 +103,7 @@ public class KpaMolekulargenetikDataMapper implements DataMapper<SomaticNgsRepor
TumorCellContent.builder() TumorCellContent.builder()
.id(resultSet.getId().toString()) .id(resultSet.getId().toString())
.patient(resultSet.getPatientReference()) .patient(resultSet.getPatientReference())
.specimen(Reference.builder().id(resultSet.getString("einsendenummer")).type("Specimen").build()) .specimen(Reference.builder().id(resultSet.getString("id")).type("Specimen").build())
.value(resultSet.getLong("tumorzellgehalt") / 100.0) .value(resultSet.getLong("tumorzellgehalt") / 100.0)
// TODO: Missing in OS.Molekulargenetik // TODO: Missing in OS.Molekulargenetik
.method(TumorCellContentMethodCoding.builder().code(TumorCellContentMethodCodingCode.HISTOLOGIC).build()) .method(TumorCellContentMethodCoding.builder().code(TumorCellContentMethodCodingCode.HISTOLOGIC).build())