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feat: add tumor staging mapping
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@@ -0,0 +1,87 @@
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package dev.pcvolkmer.onco.datamapper.mapper;
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import dev.pcvolkmer.mv64e.mtb.TumorStaging;
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import dev.pcvolkmer.mv64e.mtb.TumorStagingMethodCoding;
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import dev.pcvolkmer.mv64e.mtb.TumorStagingMethodCodingCode;
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import dev.pcvolkmer.onco.datamapper.ResultSet;
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import dev.pcvolkmer.onco.datamapper.datacatalogues.TumorausbreitungCatalogue;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Test;
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import org.junit.jupiter.api.extension.ExtendWith;
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import org.mockito.Mock;
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import org.mockito.junit.jupiter.MockitoExtension;
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import java.time.Instant;
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import java.util.Date;
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import java.util.List;
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import java.util.Map;
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import static org.assertj.core.api.Assertions.assertThat;
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import static org.mockito.ArgumentMatchers.anyInt;
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import static org.mockito.ArgumentMatchers.anyString;
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import static org.mockito.Mockito.doAnswer;
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import static org.mockito.Mockito.when;
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@ExtendWith(MockitoExtension.class)
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class KpaTumorausbreitungDataMapperTest {
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TumorausbreitungCatalogue catalogue;
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KpaTumorausbreitungDataMapper dataMapper;
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@BeforeEach
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void setUp(@Mock TumorausbreitungCatalogue catalogue) {
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this.catalogue = catalogue;
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this.dataMapper = new KpaTumorausbreitungDataMapper(catalogue);
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}
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@Test
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void shouldMapResultSet(@Mock ResultSet resultSet) {
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var testData = Map.of(
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"id", "1",
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"zeitpunkt", new java.sql.Date(Date.from(Instant.parse("2000-01-01T12:00:00Z")).getTime()),
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"typ", "pathologic",
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"wert", "tumor-free",
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"tnmtprefix", "p",
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"tnmt", "0",
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"tnmnprefix", "p",
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"tnmn", "0",
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"tnmmprefix", "p",
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"tnmm", "0"
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);
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doAnswer(invocationOnMock -> {
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var columnName = invocationOnMock.getArgument(0, String.class);
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return testData.get(columnName);
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}).when(resultSet).getString(anyString());
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doAnswer(invocationOnMock -> {
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var columnName = invocationOnMock.getArgument(0, String.class);
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return testData.get(columnName);
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}).when(resultSet).getDate(anyString());
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when(resultSet.getProcedureId()).thenReturn(1);
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doAnswer(invocationOnMock -> List.of(resultSet))
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.when(catalogue)
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.getAllByParentId(anyInt());
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doAnswer(invocationOnMock -> List.of(resultSet))
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.when(catalogue)
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.getDiseases(anyInt());
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var actualList = this.dataMapper.getByParentId(1);
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assertThat(actualList).hasSize(1);
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var actual = actualList.get(0);
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assertThat(actual).isInstanceOf(TumorStaging.class);
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assertThat(actual.getDate()).isEqualTo(new java.sql.Date(Date.from(Instant.parse("2000-01-01T12:00:00Z")).getTime()));
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assertThat(actual.getMethod()).isEqualTo(TumorStagingMethodCoding.builder().code(TumorStagingMethodCodingCode.PATHOLOGIC).build());
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assertThat(actual.getOtherClassifications()).hasSize(1);
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assertThat(actual.getOtherClassifications().get(0).getCode()).isEqualTo("tumor-free");
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assertThat(actual.getTnmClassification().getTumor().getCode()).isEqualTo("p0");
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assertThat(actual.getTnmClassification().getNodes().getCode()).isEqualTo("p0");
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assertThat(actual.getTnmClassification().getMetastasis().getCode()).isEqualTo("p0");
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}
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}
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