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https://github.com/pcvolkmer/mv64e-onkostar-data.git
synced 2025-07-03 02:52:54 +00:00
refactor: extract KpaVerwandteDataMapper
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@ -0,0 +1,74 @@
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package dev.pcvolkmer.onco.datamapper.mapper;
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import dev.pcvolkmer.mv64e.mtb.FamilyMemberHistory;
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import dev.pcvolkmer.mv64e.mtb.FamilyMemberHistoryRelationshipTypeCoding;
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import dev.pcvolkmer.mv64e.mtb.FamilyMemberHistoryRelationshipTypeCodingCode;
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import dev.pcvolkmer.onco.datamapper.ResultSet;
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import dev.pcvolkmer.onco.datamapper.datacatalogues.VerwandteCatalogue;
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import java.util.Arrays;
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import java.util.stream.Collectors;
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import static dev.pcvolkmer.onco.datamapper.mapper.MapperUtils.getPatientReference;
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/**
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* Mapper class to load and map prozedur data from database table 'dk_dnpm_uf_verwandte'
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*
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* @author Paul-Christian Volkmer
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* @since 0.1
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*/
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public class KpaVerwandteDataMapper extends AbstractSubformDataMapper<FamilyMemberHistory> {
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public KpaVerwandteDataMapper(final VerwandteCatalogue catalogue) {
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super(catalogue);
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}
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/**
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* Loads and maps Prozedur related by database id
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*
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* @param id The database id of the procedure data set
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* @return The loaded data set
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*/
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@Override
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public FamilyMemberHistory getById(final int id) {
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var data = catalogue.getById(id);
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return this.map(data);
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}
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@Override
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protected FamilyMemberHistory map(final ResultSet resultSet) {
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var builder = FamilyMemberHistory.builder();
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builder
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.id(resultSet.getId().toString())
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.patient(getPatientReference(resultSet.getString("patient_id")))
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.relationship(
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getFamilyMemberHistoryRelationshipTypeCoding(resultSet.getString("verwandtschaftsgrad"))
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)
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;
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return builder.build();
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}
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private FamilyMemberHistoryRelationshipTypeCoding getFamilyMemberHistoryRelationshipTypeCoding(final String value) {
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if (value == null || !Arrays.stream(FamilyMemberHistoryRelationshipTypeCodingCode.values()).map(FamilyMemberHistoryRelationshipTypeCodingCode::toValue).collect(Collectors.toSet()).contains(value)) {
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return null;
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}
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var resultBuilder = FamilyMemberHistoryRelationshipTypeCoding.builder()
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.system("dnpm-dip/mtb/family-meber-history/relationship-type");
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switch (value) {
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case "FAMMEMB":
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resultBuilder.code(FamilyMemberHistoryRelationshipTypeCodingCode.FAMMEMB).display("Verwandter ersten Grades");
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break;
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case "EXT":
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resultBuilder.code(FamilyMemberHistoryRelationshipTypeCodingCode.EXT).display("Verwandter weiteren Grades");
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break;
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default:
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throw new IllegalArgumentException("Unknown family member history relationship type: " + value);
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}
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return resultBuilder.build();
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}
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}
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@ -1,8 +1,5 @@
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package dev.pcvolkmer.onco.datamapper.mapper;
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package dev.pcvolkmer.onco.datamapper.mapper;
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import dev.pcvolkmer.mv64e.mtb.FamilyMemberHistory;
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import dev.pcvolkmer.mv64e.mtb.FamilyMemberHistoryRelationshipTypeCoding;
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import dev.pcvolkmer.mv64e.mtb.FamilyMemberHistoryRelationshipTypeCodingCode;
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import dev.pcvolkmer.mv64e.mtb.Mtb;
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import dev.pcvolkmer.mv64e.mtb.Mtb;
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import dev.pcvolkmer.onco.datamapper.PropertyCatalogue;
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import dev.pcvolkmer.onco.datamapper.PropertyCatalogue;
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import dev.pcvolkmer.onco.datamapper.datacatalogues.*;
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import dev.pcvolkmer.onco.datamapper.datacatalogues.*;
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@ -15,8 +12,6 @@ import javax.sql.DataSource;
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import java.util.List;
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import java.util.List;
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import java.util.stream.Collectors;
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import java.util.stream.Collectors;
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import static dev.pcvolkmer.onco.datamapper.mapper.MapperUtils.getPatientReference;
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/**
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/**
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* Mapper class to load and map Mtb files from database
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* Mapper class to load and map Mtb files from database
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*
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*
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@ -91,6 +86,8 @@ public class MtbDataMapper implements DataMapper<Mtb> {
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propertyCatalogue
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propertyCatalogue
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);
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);
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var verwandteDataMapper = new KpaVerwandteDataMapper(catalogueFactory.catalogue(VerwandteCatalogue.class));
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var resultBuilder = Mtb.builder();
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var resultBuilder = Mtb.builder();
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try {
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try {
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@ -105,20 +102,7 @@ public class MtbDataMapper implements DataMapper<Mtb> {
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.guidelineProcedures(prozedurMapper.getByParentId(kpaId))
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.guidelineProcedures(prozedurMapper.getByParentId(kpaId))
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.guidelineTherapies(therapielinieMapper.getByParentId(kpaId))
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.guidelineTherapies(therapielinieMapper.getByParentId(kpaId))
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.performanceStatus(ecogMapper.getByParentId(kpaId))
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.performanceStatus(ecogMapper.getByParentId(kpaId))
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// TODO Refactoring of inlined mapping
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.familyMemberHistories(verwandteDataMapper.getByParentId(kpaId))
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.familyMemberHistories(
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catalogueFactory.catalogue(VerwandteCatalogue.class).getAllByParentId(kpaId).stream()
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.map(it -> FamilyMemberHistory.builder()
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.id(it.getId().toString())
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.patient(getPatientReference(patient.getId()))
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.relationship(FamilyMemberHistoryRelationshipTypeCoding.builder().code(
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it.getString("verwandschaftsgrad").equals("FAMMEMB")
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? FamilyMemberHistoryRelationshipTypeCodingCode.FAMMEMB
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: FamilyMemberHistoryRelationshipTypeCodingCode.EXT
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).build())
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.build()
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).collect(Collectors.toList())
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)
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// DNPM Therapieplan
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// DNPM Therapieplan
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.carePlans(
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.carePlans(
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therapieplanCatalogue
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therapieplanCatalogue
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@ -0,0 +1,78 @@
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package dev.pcvolkmer.onco.datamapper.mapper;
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import dev.pcvolkmer.mv64e.mtb.FamilyMemberHistory;
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import dev.pcvolkmer.mv64e.mtb.FamilyMemberHistoryRelationshipTypeCoding;
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import dev.pcvolkmer.mv64e.mtb.FamilyMemberHistoryRelationshipTypeCodingCode;
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import dev.pcvolkmer.mv64e.mtb.Reference;
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import dev.pcvolkmer.onco.datamapper.ResultSet;
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import dev.pcvolkmer.onco.datamapper.datacatalogues.VerwandteCatalogue;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Test;
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import org.junit.jupiter.api.extension.ExtendWith;
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import org.mockito.Mock;
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import org.mockito.junit.jupiter.MockitoExtension;
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import java.util.List;
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import java.util.Map;
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import static org.assertj.core.api.Assertions.assertThat;
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import static org.mockito.ArgumentMatchers.anyInt;
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import static org.mockito.ArgumentMatchers.anyString;
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import static org.mockito.Mockito.doAnswer;
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import static org.mockito.Mockito.when;
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@ExtendWith(MockitoExtension.class)
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class KpaVerwandteDataMapperTest {
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VerwandteCatalogue catalogue;
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KpaVerwandteDataMapper dataMapper;
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@BeforeEach
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void setUp(@Mock VerwandteCatalogue catalogue) {
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this.catalogue = catalogue;
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this.dataMapper = new KpaVerwandteDataMapper(catalogue);
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}
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@Test
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void shouldMapResultSet(@Mock ResultSet resultSet) {
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var testData = Map.of(
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"id", "1",
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"patient_id", "42",
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"verwandtschaftsgrad", "EXT"
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);
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doAnswer(invocationOnMock -> {
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var columnName = invocationOnMock.getArgument(0, String.class);
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return testData.get(columnName);
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}).when(resultSet).getString(anyString());
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when(resultSet.getId()).thenReturn(1);
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doAnswer(invocationOnMock -> List.of(resultSet))
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.when(catalogue)
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.getAllByParentId(anyInt());
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var actualList = this.dataMapper.getByParentId(1);
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assertThat(actualList).hasSize(1);
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var actual = actualList.get(0);
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assertThat(actual).isInstanceOf(FamilyMemberHistory.class);
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assertThat(actual.getId()).isEqualTo("1");
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assertThat(actual.getPatient())
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.isEqualTo(Reference.builder()
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.id("42")
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.type("Patient")
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.build()
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);
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assertThat(actual.getRelationship())
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.isEqualTo(
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FamilyMemberHistoryRelationshipTypeCoding.builder()
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.code(FamilyMemberHistoryRelationshipTypeCodingCode.EXT)
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.display("Verwandter weiteren Grades")
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.system("dnpm-dip/mtb/family-meber-history/relationship-type")
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.build()
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);
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}
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}
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