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mirror of https://github.com/pcvolkmer/mv64e-onkostar-data.git synced 2025-07-03 02:52:54 +00:00

refactor: use custum type to wrap raw map

This commit is contained in:
2025-06-21 10:38:57 +02:00
parent 6d1ca42d12
commit a70a96980a
13 changed files with 202 additions and 87 deletions

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@ -0,0 +1,82 @@
package dev.pcvolkmer.onco.datamapper;
import java.sql.Date;
import java.util.Map;
/**
* Result set type to wrap <code>Map<String, Object></code>
*
* @author Paul-Christian Volkmer
* @since 0.1
*/
public class ResultSet {
private final Map<String, Object> rawData;
private ResultSet(final Map<String, Object> rawData) {
this.rawData = rawData;
}
public static ResultSet from(final Map<String, Object> rawData) {
return new ResultSet(rawData);
}
public Map<String, Object> getRawData() {
return rawData;
}
/**
* Get column value as String and cast value if possible
* @param columnName The name of the column
* @return The column value as String
*/
public String getString(String columnName) {
var raw = this.rawData.get(columnName);
if (raw == null) {
return null;
} else if (raw instanceof String) {
return raw.toString();
} else if (raw instanceof Integer) {
return ((Integer) raw).toString();
}
throw new IllegalArgumentException("Cannot convert " + raw.getClass() + " to String");
}
/**
* Get column value as Integer and cast value if possible
* @param columnName The name of the column
* @return The column value as Integer
*/
public Integer getInteger(String columnName) {
var raw = this.rawData.get(columnName);
if (raw == null) {
return null;
} else if (raw instanceof Integer) {
return ((Integer) raw);
}
throw new IllegalArgumentException("Cannot convert " + raw.getClass() + " to Integer");
}
/**
* Get column value as Date and cast value if possible
* @param columnName The name of the column
* @return The column value as Date
*/
public Date getDate(String columnName) {
var raw = this.rawData.get(columnName);
if (raw == null) {
return null;
}
if (raw instanceof Date) {
return (Date) raw;
}
throw new IllegalArgumentException("Cannot convert " + raw.getClass() + " to Date");
}
}

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@ -1,31 +0,0 @@
package dev.pcvolkmer.onco.datamapper;
import java.sql.Date;
public class TypeMapper {
public static String asString(Object raw) {
if (raw == null) {
return null;
}
if (raw instanceof String) {
return (String) raw;
} else if (raw instanceof Integer) {
return ((Integer) raw).toString();
}
throw new IllegalArgumentException("Cannot convert " + raw.getClass() + " to String");
}
public static Date asDate(Object raw) {
if (raw == null) {
return null;
}
if (raw instanceof Date) {
return (Date) raw;
}
throw new IllegalArgumentException("Cannot convert " + raw.getClass() + " to Date");
}
}

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@ -1,5 +1,6 @@
package dev.pcvolkmer.onco.datamapper.datacatalogues; package dev.pcvolkmer.onco.datamapper.datacatalogues;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import dev.pcvolkmer.onco.datamapper.exceptions.DataAccessException; import dev.pcvolkmer.onco.datamapper.exceptions.DataAccessException;
import org.springframework.jdbc.core.JdbcTemplate; import org.springframework.jdbc.core.JdbcTemplate;
@ -28,7 +29,7 @@ public abstract class AbstractDataCatalogue implements DataCatalogue {
* @return The procedure id * @return The procedure id
*/ */
@Override @Override
public Map<String, Object> getById(int id) { public ResultSet getById(int id) {
var result = this.jdbcTemplate.queryForList( var result = this.jdbcTemplate.queryForList(
String.format( String.format(
"SELECT * FROM %s JOIN prozedur ON (prozedur.id = %s.id) WHERE geloescht = 0 AND prozedur.id = ?", "SELECT * FROM %s JOIN prozedur ON (prozedur.id = %s.id) WHERE geloescht = 0 AND prozedur.id = ?",
@ -43,7 +44,7 @@ public abstract class AbstractDataCatalogue implements DataCatalogue {
throw new DataAccessException("Multiple records found for id: " + id); throw new DataAccessException("Multiple records found for id: " + id);
} }
return result.get(0); return ResultSet.from(result.get(0));
} }
} }

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@ -1,9 +1,10 @@
package dev.pcvolkmer.onco.datamapper.datacatalogues; package dev.pcvolkmer.onco.datamapper.datacatalogues;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import org.springframework.jdbc.core.JdbcTemplate; import org.springframework.jdbc.core.JdbcTemplate;
import java.util.List; import java.util.List;
import java.util.Map; import java.util.stream.Collectors;
/** /**
* Common implementations for all data catalogues used in subforms * Common implementations for all data catalogues used in subforms
@ -25,14 +26,17 @@ public abstract class AbstractSubformDataCatalogue extends AbstractDataCatalogue
* @param id The procedure id * @param id The procedure id
* @return The procedure id * @return The procedure id
*/ */
public List<Map<String, Object>> getAllByMainId(int id) { public List<ResultSet> getAllByMainId(int id) {
return this.jdbcTemplate.queryForList( return this.jdbcTemplate.queryForList(
String.format( String.format(
"SELECT * FROM %s JOIN prozedur ON (prozedur.id = %s.id) WHERE geloescht = 0 AND hauptprozedur_id = ?", "SELECT * FROM %s JOIN prozedur ON (prozedur.id = %s.id) WHERE geloescht = 0 AND hauptprozedur_id = ?",
getTableName(), getTableName(),
getTableName() getTableName()
), ),
id); id)
.stream()
.map(ResultSet::from)
.collect(Collectors.toList());
} }
} }

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@ -1,6 +1,6 @@
package dev.pcvolkmer.onco.datamapper.datacatalogues; package dev.pcvolkmer.onco.datamapper.datacatalogues;
import java.util.Map; import dev.pcvolkmer.onco.datamapper.ResultSet;
/** /**
* Common interface for all data catalogues * Common interface for all data catalogues
@ -15,6 +15,6 @@ public interface DataCatalogue {
* @param id The database id (primary key) * @param id The database id (primary key)
* @return The result set * @return The result set
*/ */
Map<String, Object> getById(int id); ResultSet getById(int id);
} }

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@ -1,10 +1,9 @@
package dev.pcvolkmer.onco.datamapper.datacatalogues; package dev.pcvolkmer.onco.datamapper.datacatalogues;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import dev.pcvolkmer.onco.datamapper.exceptions.DataAccessException; import dev.pcvolkmer.onco.datamapper.exceptions.DataAccessException;
import org.springframework.jdbc.core.JdbcTemplate; import org.springframework.jdbc.core.JdbcTemplate;
import java.util.Map;
/** /**
* Load raw result sets from database table 'patient' * Load raw result sets from database table 'patient'
* *
@ -25,11 +24,12 @@ public class PatientCatalogue implements DataCatalogue {
/** /**
* Get patient result set by procedure id * Get patient result set by procedure id
*
* @param id The procedure id * @param id The procedure id
* @return The procedure id * @return The procedure id
*/ */
@Override @Override
public Map<String, Object> getById(int id) { public ResultSet getById(int id) {
var result = this.jdbcTemplate.queryForList( var result = this.jdbcTemplate.queryForList(
"SELECT * FROM patient WHERE id = ?", "SELECT * FROM patient WHERE id = ?",
@ -41,7 +41,7 @@ public class PatientCatalogue implements DataCatalogue {
throw new DataAccessException("Multiple patient records found for id: " + id); throw new DataAccessException("Multiple patient records found for id: " + id);
} }
return result.get(0); return ResultSet.from(result.get(0));
} }
} }

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@ -4,8 +4,6 @@ import dev.pcvolkmer.mv64e.mtb.Coding;
import dev.pcvolkmer.mv64e.mtb.MtbDiagnosis; import dev.pcvolkmer.mv64e.mtb.MtbDiagnosis;
import dev.pcvolkmer.onco.datamapper.datacatalogues.KpaCatalogue; import dev.pcvolkmer.onco.datamapper.datacatalogues.KpaCatalogue;
import static dev.pcvolkmer.onco.datamapper.TypeMapper.asString;
/** /**
* Mapper class to load and map diagnosis data from database table 'dk_dnpm_kpa' * Mapper class to load and map diagnosis data from database table 'dk_dnpm_kpa'
* *
@ -30,12 +28,12 @@ public class KpaDiagnosisDataMapper implements DataMapper<MtbDiagnosis> {
public MtbDiagnosis getById(int id) { public MtbDiagnosis getById(int id) {
var data = kpaCatalogue.getById(id); var data = kpaCatalogue.getById(id);
var builder = MtbDiagnosis.builder(); var builder = MtbDiagnosis.builder();
builder builder
.id(asString(data.get("id"))) .id(data.getString("id"))
.code( .code(
Coding.builder() Coding.builder()
.code(asString(data.get("icd10"))) .code(data.getString("icd10"))
.build() .build()
); );
return builder.build(); return builder.build();

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@ -1,13 +1,9 @@
package dev.pcvolkmer.onco.datamapper.mapper; package dev.pcvolkmer.onco.datamapper.mapper;
import dev.pcvolkmer.mv64e.mtb.*; import dev.pcvolkmer.mv64e.mtb.*;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import dev.pcvolkmer.onco.datamapper.datacatalogues.KpaCatalogue; import dev.pcvolkmer.onco.datamapper.datacatalogues.KpaCatalogue;
import java.util.Map;
import static dev.pcvolkmer.onco.datamapper.TypeMapper.asDate;
import static dev.pcvolkmer.onco.datamapper.TypeMapper.asString;
/** /**
* Mapper class to load and map patient data from database table 'dk_dnpm_kpa' * Mapper class to load and map patient data from database table 'dk_dnpm_kpa'
* *
@ -34,18 +30,18 @@ public class KpaPatientDataMapper implements DataMapper<Patient> {
var builder = Patient.builder(); var builder = Patient.builder();
builder builder
.id(asString(kpaData.get("patient_id"))) .id(kpaData.getString("patient_id"))
.gender(getGenderCoding(kpaData)) .gender(getGenderCoding(kpaData))
.birthDate(mapDate(asDate(kpaData.get("geburtsdatum")))) .birthDate(mapDate(kpaData.getDate("geburtsdatum")))
.dateOfDeath(mapDate(asDate(kpaData.get("todesdatum")))) .dateOfDeath(mapDate(kpaData.getDate("todesdatum")))
.healthInsurance(getHealthInsurance(kpaData)) .healthInsurance(getHealthInsurance(kpaData))
; ;
return builder.build(); return builder.build();
} }
private GenderCoding getGenderCoding(Map<String, Object> data) { private GenderCoding getGenderCoding(ResultSet data) {
var genderCodingBuilder = GenderCoding.builder(); var genderCodingBuilder = GenderCoding.builder();
String geschlecht = asString(data.get("geschlecht")); String geschlecht = data.getString("geschlecht");
switch (geschlecht) { switch (geschlecht) {
case "m": case "m":
genderCodingBuilder.code(GenderCodingCode.MALE); genderCodingBuilder.code(GenderCodingCode.MALE);
@ -63,9 +59,9 @@ public class KpaPatientDataMapper implements DataMapper<Patient> {
return genderCodingBuilder.build(); return genderCodingBuilder.build();
} }
private HealthInsurance getHealthInsurance(Map<String, Object> data) { private HealthInsurance getHealthInsurance(ResultSet data) {
var healthInsuranceCodingBuilder = HealthInsuranceCoding.builder(); var healthInsuranceCodingBuilder = HealthInsuranceCoding.builder();
String healthInsuranceType = asString(data.get("artderkrankenkasse")); String healthInsuranceType = data.getString("artderkrankenkasse");
if (healthInsuranceType == null) { if (healthInsuranceType == null) {
healthInsuranceCodingBuilder.code(HealthInsuranceCodingCode.UNK).build(); healthInsuranceCodingBuilder.code(HealthInsuranceCodingCode.UNK).build();
return HealthInsurance.builder().type(healthInsuranceCodingBuilder.build()).build(); return HealthInsurance.builder().type(healthInsuranceCodingBuilder.build()).build();

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@ -4,14 +4,10 @@ import dev.pcvolkmer.mv64e.mtb.Address;
import dev.pcvolkmer.mv64e.mtb.GenderCoding; import dev.pcvolkmer.mv64e.mtb.GenderCoding;
import dev.pcvolkmer.mv64e.mtb.GenderCodingCode; import dev.pcvolkmer.mv64e.mtb.GenderCodingCode;
import dev.pcvolkmer.mv64e.mtb.Patient; import dev.pcvolkmer.mv64e.mtb.Patient;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import dev.pcvolkmer.onco.datamapper.datacatalogues.PatientCatalogue; import dev.pcvolkmer.onco.datamapper.datacatalogues.PatientCatalogue;
import dev.pcvolkmer.onco.datamapper.exceptions.DataAccessException; import dev.pcvolkmer.onco.datamapper.exceptions.DataAccessException;
import java.util.Map;
import static dev.pcvolkmer.onco.datamapper.TypeMapper.asDate;
import static dev.pcvolkmer.onco.datamapper.TypeMapper.asString;
/** /**
* Mapper class to load and map diagnosis data from database table 'dk_dnpm_kpa' * Mapper class to load and map diagnosis data from database table 'dk_dnpm_kpa'
* *
@ -33,23 +29,23 @@ public class PatientDataMapper implements DataMapper<Patient> {
* @return The loaded MtbDiagnosis file * @return The loaded MtbDiagnosis file
*/ */
@Override @Override
public Patient getById(int id) { public Patient getById(final int id) {
var patientData = patientCatalogue.getById(id); var patientData = patientCatalogue.getById(id);
var builder = Patient.builder(); var builder = Patient.builder();
builder builder
.id(asString(patientData.get("id"))) .id(patientData.getString("id"))
.gender(getGenderCoding(patientData)) .gender(getGenderCoding(patientData))
.birthDate(mapDate(asDate(patientData.get("geburtsdatum")))) .birthDate(mapDate(patientData.getDate("geburtsdatum")))
.dateOfDeath(mapDate(asDate(patientData.get("sterbedatum")))) .dateOfDeath(mapDate(patientData.getDate("sterbedatum")))
.address(Address.builder().municipalityCode(getMunicipalityCode(patientData)).build()) .address(Address.builder().municipalityCode(getMunicipalityCode(patientData)).build())
; ;
return builder.build(); return builder.build();
} }
private GenderCoding getGenderCoding(Map<String, Object> data) { private GenderCoding getGenderCoding(final ResultSet data) {
var genderCodingBuilder = GenderCoding.builder(); var genderCodingBuilder = GenderCoding.builder();
String geschlecht = asString(data.get("geschlecht")); String geschlecht = data.getString("geschlecht");
switch (geschlecht) { switch (geschlecht) {
case "M": case "M":
genderCodingBuilder.code(GenderCodingCode.MALE); genderCodingBuilder.code(GenderCodingCode.MALE);
@ -66,8 +62,8 @@ public class PatientDataMapper implements DataMapper<Patient> {
return genderCodingBuilder.build(); return genderCodingBuilder.build();
} }
private String getMunicipalityCode(Map<String, Object> data) { private String getMunicipalityCode(final ResultSet data) {
var gkz = asString(data.get("GKZ")); var gkz = data.getString("GKZ");
if (gkz == null || gkz.trim().length() != 8) { if (gkz == null || gkz.trim().length() != 8) {
throw new DataAccessException("Municipality code not found"); throw new DataAccessException("Municipality code not found");
} }

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@ -0,0 +1,46 @@
package dev.pcvolkmer.onco.datamapper;
import org.junit.jupiter.api.Test;
import java.time.Instant;
import java.sql.Date;
import java.util.Map;
import static org.assertj.core.api.Assertions.assertThat;
class ResultSetTest {
@Test
void shouldReturnStringValues() {
var data = getTestData();
assertThat(data.getString("null")).isNull();
assertThat(data.getString("string")).isEqualTo("TestString");
assertThat(data.getString("int")).isEqualTo("42");
}
@Test
void shouldReturnIntegerValues() {
var data = getTestData();
assertThat(data.getInteger("int")).isEqualTo(42);
}
@Test
void shouldReturnDateValues() {
var data = getTestData();
assertThat(data.getDate("date")).isEqualTo(new Date(Date.from(Instant.parse("2025-06-21T12:00:00Z")).getTime()));
}
static ResultSet getTestData() {
return ResultSet.from(
Map.of(
"string", "TestString",
"int", 42,
"date", new Date(Date.from(Instant.parse("2025-06-21T12:00:00Z")).getTime())
)
);
}
}

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@ -1,6 +1,7 @@
package dev.pcvolkmer.onco.datamapper.mapper; package dev.pcvolkmer.onco.datamapper.mapper;
import dev.pcvolkmer.mv64e.mtb.MtbDiagnosis; import dev.pcvolkmer.mv64e.mtb.MtbDiagnosis;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import dev.pcvolkmer.onco.datamapper.datacatalogues.KpaCatalogue; import dev.pcvolkmer.onco.datamapper.datacatalogues.KpaCatalogue;
import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test; import org.junit.jupiter.api.Test;
@ -35,11 +36,11 @@ class KpaDiagnosisDataMapperTest {
} }
@Test @Test
void shouldCreateDiagnosis(@Mock Map<String, Object> resultSet) { void shouldCreateDiagnosis(@Mock ResultSet resultSet) {
doAnswer(invocationOnMock -> { doAnswer(invocationOnMock -> {
var columnName = invocationOnMock.getArgument(0, String.class); var columnName = invocationOnMock.getArgument(0, String.class);
return testData().get(columnName); return testData().get(columnName);
}).when(resultSet).get(anyString()); }).when(resultSet).getString(anyString());
doAnswer(invocationOnMock -> resultSet) doAnswer(invocationOnMock -> resultSet)
.when(kpaCatalogue) .when(kpaCatalogue)

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@ -1,6 +1,7 @@
package dev.pcvolkmer.onco.datamapper.mapper; package dev.pcvolkmer.onco.datamapper.mapper;
import dev.pcvolkmer.mv64e.mtb.*; import dev.pcvolkmer.mv64e.mtb.*;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import dev.pcvolkmer.onco.datamapper.datacatalogues.KpaCatalogue; import dev.pcvolkmer.onco.datamapper.datacatalogues.KpaCatalogue;
import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test; import org.junit.jupiter.api.Test;
@ -37,7 +38,7 @@ class KpaPatientDataMapperTest {
} }
@Test @Test
void shouldCreatePatientAlive(@Mock Map<String, Object> resultSet) { void shouldCreatePatientAlive(@Mock ResultSet resultSet) {
var testData = Map.of( var testData = Map.of(
"patient_id", "1", "patient_id", "1",
"geschlecht", "m", "geschlecht", "m",
@ -49,7 +50,12 @@ class KpaPatientDataMapperTest {
doAnswer(invocationOnMock -> { doAnswer(invocationOnMock -> {
var columnName = invocationOnMock.getArgument(0, String.class); var columnName = invocationOnMock.getArgument(0, String.class);
return testData.get(columnName); return testData.get(columnName);
}).when(resultSet).get(anyString()); }).when(resultSet).getString(anyString());
doAnswer(invocationOnMock -> {
var columnName = invocationOnMock.getArgument(0, String.class);
return testData.get(columnName);
}).when(resultSet).getDate(anyString());
doAnswer(invocationOnMock -> resultSet) doAnswer(invocationOnMock -> resultSet)
.when(kpaCatalogue) .when(kpaCatalogue)
@ -67,7 +73,7 @@ class KpaPatientDataMapperTest {
} }
@Test @Test
void shouldCreatePatientDead(@Mock Map<String, Object> resultSet) { void shouldCreatePatientDead(@Mock ResultSet resultSet) {
var testData = Map.of( var testData = Map.of(
"patient_id", "1", "patient_id", "1",
"geschlecht", "w", "geschlecht", "w",
@ -78,7 +84,12 @@ class KpaPatientDataMapperTest {
doAnswer(invocationOnMock -> { doAnswer(invocationOnMock -> {
var columnName = invocationOnMock.getArgument(0, String.class); var columnName = invocationOnMock.getArgument(0, String.class);
return testData.get(columnName); return testData.get(columnName);
}).when(resultSet).get(anyString()); }).when(resultSet).getString(anyString());
doAnswer(invocationOnMock -> {
var columnName = invocationOnMock.getArgument(0, String.class);
return testData.get(columnName);
}).when(resultSet).getDate(anyString());
doAnswer(invocationOnMock -> resultSet) doAnswer(invocationOnMock -> resultSet)
.when(kpaCatalogue) .when(kpaCatalogue)

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@ -3,6 +3,7 @@ package dev.pcvolkmer.onco.datamapper.mapper;
import dev.pcvolkmer.mv64e.mtb.Address; import dev.pcvolkmer.mv64e.mtb.Address;
import dev.pcvolkmer.mv64e.mtb.GenderCodingCode; import dev.pcvolkmer.mv64e.mtb.GenderCodingCode;
import dev.pcvolkmer.mv64e.mtb.Patient; import dev.pcvolkmer.mv64e.mtb.Patient;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import dev.pcvolkmer.onco.datamapper.datacatalogues.PatientCatalogue; import dev.pcvolkmer.onco.datamapper.datacatalogues.PatientCatalogue;
import org.junit.jupiter.api.BeforeEach; import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test; import org.junit.jupiter.api.Test;
@ -39,7 +40,7 @@ class PatientDataMapperTest {
} }
@Test @Test
void shouldCreatePatientAlive(@Mock Map<String, Object> resultSet) { void shouldCreatePatientAlive(@Mock ResultSet resultSet) {
var testData = Map.of( var testData = Map.of(
"id", "1", "id", "1",
"geschlecht", "M", "geschlecht", "M",
@ -51,7 +52,12 @@ class PatientDataMapperTest {
doAnswer(invocationOnMock -> { doAnswer(invocationOnMock -> {
var columnName = invocationOnMock.getArgument(0, String.class); var columnName = invocationOnMock.getArgument(0, String.class);
return testData.get(columnName); return testData.get(columnName);
}).when(resultSet).get(anyString()); }).when(resultSet).getString(anyString());
doAnswer(invocationOnMock -> {
var columnName = invocationOnMock.getArgument(0, String.class);
return testData.get(columnName);
}).when(resultSet).getDate(anyString());
doAnswer(invocationOnMock -> resultSet) doAnswer(invocationOnMock -> resultSet)
.when(patientCatalogue) .when(patientCatalogue)
@ -67,7 +73,7 @@ class PatientDataMapperTest {
} }
@Test @Test
void shouldCreatePatientDead(@Mock Map<String, Object> resultSet) { void shouldCreatePatientDead(@Mock ResultSet resultSet) {
var testData = Map.of( var testData = Map.of(
"id", "1", "id", "1",
"geschlecht", "M", "geschlecht", "M",
@ -78,7 +84,12 @@ class PatientDataMapperTest {
doAnswer(invocationOnMock -> { doAnswer(invocationOnMock -> {
var columnName = invocationOnMock.getArgument(0, String.class); var columnName = invocationOnMock.getArgument(0, String.class);
return testData.get(columnName); return testData.get(columnName);
}).when(resultSet).get(anyString()); }).when(resultSet).getString(anyString());
doAnswer(invocationOnMock -> {
var columnName = invocationOnMock.getArgument(0, String.class);
return testData.get(columnName);
}).when(resultSet).getDate(anyString());
doAnswer(invocationOnMock -> resultSet) doAnswer(invocationOnMock -> resultSet)
.when(patientCatalogue) .when(patientCatalogue)