pcvolkmer/mv64e-onkostar-plugin-export
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HELP.md
.gradle
build/
target/
!gradle/wrapper/gradle-wrapper.jar
!**/src/main/**/build/
!**/src/test/**/build/
!.mvn/wrapper/maven-wrapper.jar
!**/src/main/**/target/
!**/src/test/**/target/
### STS ###
.apt_generated
.classpath
.factorypath
.project
.settings
.springBeans
.sts4-cache
bin/
!**/src/main/**/bin/
!**/src/test/**/bin/
### IntelliJ IDEA ###
.idea
*.iws
*.iml
*.ipr
out/
!**/src/main/**/out/
!**/src/test/**/out/
### NetBeans ###
/nbproject/private/
/nbbuild/
/dist/
/nbdist/
/.nb-gradle/
### VS Code ###
.vscode/
### Onkostar Libs ###
libs/*.jar

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GNU LESSER GENERAL PUBLIC LICENSE
Version 3, 29 June 2007
Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
This version of the GNU Lesser General Public License incorporates
the terms and conditions of version 3 of the GNU General Public
License, supplemented by the additional permissions listed below.
0. Additional Definitions.
As used herein, "this License" refers to version 3 of the GNU Lesser
General Public License, and the "GNU GPL" refers to version 3 of the GNU
General Public License.
"The Library" refers to a covered work governed by this License,
other than an Application or a Combined Work as defined below.
An "Application" is any work that makes use of an interface provided
by the Library, but which is not otherwise based on the Library.
Defining a subclass of a class defined by the Library is deemed a mode
of using an interface provided by the Library.
A "Combined Work" is a work produced by combining or linking an
Application with the Library. The particular version of the Library
with which the Combined Work was made is also called the "Linked
Version".
The "Minimal Corresponding Source" for a Combined Work means the
Corresponding Source for the Combined Work, excluding any source code
for portions of the Combined Work that, considered in isolation, are
based on the Application, and not on the Linked Version.
The "Corresponding Application Code" for a Combined Work means the
object code and/or source code for the Application, including any data
and utility programs needed for reproducing the Combined Work from the
Application, but excluding the System Libraries of the Combined Work.
1. Exception to Section 3 of the GNU GPL.
You may convey a covered work under sections 3 and 4 of this License
without being bound by section 3 of the GNU GPL.
2. Conveying Modified Versions.
If you modify a copy of the Library, and, in your modifications, a
facility refers to a function or data to be supplied by an Application
that uses the facility (other than as an argument passed when the
facility is invoked), then you may convey a copy of the modified
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a) under this License, provided that you make a good faith effort to
ensure that, in the event an Application does not supply the
function or data, the facility still operates, and performs
whatever part of its purpose remains meaningful, or
b) under the GNU GPL, with none of the additional permissions of
this License applicable to that copy.
3. Object Code Incorporating Material from Library Header Files.
The object code form of an Application may incorporate material from
a header file that is part of the Library. You may convey such object
code under terms of your choice, provided that, if the incorporated
material is not limited to numerical parameters, data structure
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4. Combined Works.
You may convey a Combined Work under terms of your choice that,
taken together, effectively do not restrict modification of the
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the Linked Version to produce a modified Combined Work, in the
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Corresponding Source.
1) Use a suitable shared library mechanism for linking with the
Library. A suitable mechanism is one that (a) uses at run time
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e) Provide Installation Information, but only if you would otherwise
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you use option 4d0, the Installation Information must accompany
the Minimal Corresponding Source and Corresponding Application
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for conveying Corresponding Source.)
5. Combined Libraries.
You may place library facilities that are a work based on the
Library side by side in a single library together with other library
facilities that are not Applications and are not covered by this
License, and convey such a combined library under terms of your
choice, if you do both of the following:
a) Accompany the combined library with a copy of the same work based
on the Library, uncombined with any other library facilities,
conveyed under the terms of this License.
b) Give prominent notice with the combined library that part of it
is a work based on the Library, and explaining where to find the
accompanying uncombined form of the same work.
6. Revised Versions of the GNU Lesser General Public License.
The Free Software Foundation may publish revised and/or new versions
of the GNU Lesser General Public License from time to time. Such new
versions will be similar in spirit to the present version, but may
differ in detail to address new problems or concerns.
Each version is given a distinguishing version number. If the
Library as you received it specifies that a certain numbered version
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# Onkostar Plugin "mv64e-onkostar-plugin-export"
Aufgabe dieses Plugins ist es, die Inhalte der DNPM-Formulare in die Datenstruktur des DNPM-Datenmodells 2.1 zu wandeln
und anhand festgelegter Regeln die Notwendigkeit zum Export zu prüfen und diesen durchzuführen.
Hierzu verwendet das Plugin das Projekt https://github.com/pcvolkmer/mv64e-onkostar-data.
## Einstellungen
Zum Betrieb dieses Plugins ist die Angabe der URL der Zielanwendung erforderlich.
Dies lässt sich initial durch folgende Datenbankanfrage anlegen, später dann in den allgemeinen Einstellungen von
Onkostar auch ändern.
```
INSERT INTO einstellung
(name, wert, kategorie, beschreibung)
VALUES(
'dnpmexport_url',
'http://localhost:9000/mtb/etl/patient-record',
'DNPM',
'DNPM-Export - URL'
);
INSERT INTO einstellung
(name, wert, kategorie, beschreibung)
VALUES(
'dnpmexport_prefix',
'TEST',
'DNPM',
'DNPM-Export - Prefix'
);
```
## Einordnung innerhalb einer DNPM-ETL-Strecke
Dieses Plugin erlaubt das Extrahieren (das "E" in ETL) der benötigten Informationen aus Onkostar und das Übertragen an
die weitere ETL-Strecke.
## Ablauf des Exports
Beim Abschließen eines DNPM-Formulars wird für die Formulare (und damit auch Unterformulare)
* DNPM Klinik/Anamnese
* DNPM Therapieplan
* DNPM FollowUp *(aktuell nicht nicht umgesetzt)*
der Inhalt aller zugehörigen DNPM-Formulare für den Patienten und die Erkrankung, für den/die ein DNPM-Formular
abgeschlossen wurde, ermittelt und zusammengetragen.
Hierbei wird im Falle eines Formulars *DNPM Therapieplan* das entsprechende Formular *DNPM Klinik/Anamnese* ermittelt
und in Folge die zugehörigen Formulare ermittelt:
* **DNPM Klinik/Anamnese** => Ermittlung der Formulare *DNPM Therapieplan* die einen Formularverweis auf dieses Formular
eingetragen haben.
* **DNPM Therapieplan** => Ermittlung der Formulare *DNPM FollowUp* die einen Formularverweis auf dieses Formular
eingetragen haben.
Zudem werden die Formulare *OS.Tumorkonferenz* und *OS.Molekulargenetik* anhand der verwendeten Verweise ermittelt.
Die Übermittlung erfolgt ohne weiteres Zutun von Seiten des Anwenders und wird bereits durch das Abschließen eines
DNPM-Formulars ausgelöst.

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plugins {
id 'java-library'
}
group = 'dev.pcvolkmer.onco'
version = '0.1.0-SNAPSHOT'
description = 'OS Export-Plugin für das DNPM-Datenmodell 2.1'
java.sourceCompatibility = JavaVersion.VERSION_11
repositories {
mavenLocal()
mavenCentral()
}
configurations {
configureEach {
resolutionStrategy {
cacheChangingModulesFor(5, "minutes")
}
}
}
ext {
onkostarVersion = '2.14.1'
springVersion = '4.3.8.RELEASE'
slf4jVersion = '1.7.2'
junitVersion = '5.12.1'
assertjVersion = '3.27.3'
mockitoVersion = '5.16.1'
}
dependencies {
implementation files("./libs/onkostar-api-${onkostarVersion}.jar")
implementation "org.springframework:spring-beans:${springVersion}"
implementation "org.springframework:spring-context:${springVersion}"
implementation "org.springframework:spring-jdbc:${springVersion}"
implementation "org.slf4j:slf4j-api:${slf4jVersion}"
implementation("dev.pcvolkmer.onco:mv64e-onkostar-data:0.1.0-SNAPSHOT") { changing = true }
testImplementation "org.springframework:spring-test:${springVersion}"
testImplementation "org.junit.jupiter:junit-jupiter-engine:${junitVersion}"
testImplementation "org.junit.jupiter:junit-jupiter-params:${junitVersion}"
testImplementation "org.assertj:assertj-core:${assertjVersion}"
testImplementation "org.mockito:mockito-core:${mockitoVersion}"
testImplementation "org.mockito:mockito-junit-jupiter:${mockitoVersion}"
testImplementation "ca.uhn.hapi:hapi-structures-v26:2.3"
testImplementation "org.hibernate:hibernate-core:4.3.11.Final"
}
tasks.named('test') {
useJUnitPlatform()
}

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distributionBase=GRADLE_USER_HOME
distributionPath=wrapper/dists
distributionUrl=https\://services.gradle.org/distributions/gradle-8.10-bin.zip
networkTimeout=10000
validateDistributionUrl=true
zipStoreBase=GRADLE_USER_HOME
zipStorePath=wrapper/dists

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#!/bin/sh
#
# Copyright © 2015-2021 the original authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# SPDX-License-Identifier: Apache-2.0
#
##############################################################################
#
# Gradle start up script for POSIX generated by Gradle.
#
# Important for running:
#
# (1) You need a POSIX-compliant shell to run this script. If your /bin/sh is
# noncompliant, but you have some other compliant shell such as ksh or
# bash, then to run this script, type that shell name before the whole
# command line, like:
#
# ksh Gradle
#
# Busybox and similar reduced shells will NOT work, because this script
# requires all of these POSIX shell features:
# * functions;
# * expansions «$var», «${var}», «${var:-default}», «${var+SET}»,
# «${var#prefix}», «${var%suffix}», and «$( cmd )»;
# * compound commands having a testable exit status, especially «case»;
# * various built-in commands including «command», «set», and «ulimit».
#
# Important for patching:
#
# (2) This script targets any POSIX shell, so it avoids extensions provided
# by Bash, Ksh, etc; in particular arrays are avoided.
#
# The "traditional" practice of packing multiple parameters into a
# space-separated string is a well documented source of bugs and security
# problems, so this is (mostly) avoided, by progressively accumulating
# options in "$@", and eventually passing that to Java.
#
# Where the inherited environment variables (DEFAULT_JVM_OPTS, JAVA_OPTS,
# and GRADLE_OPTS) rely on word-splitting, this is performed explicitly;
# see the in-line comments for details.
#
# There are tweaks for specific operating systems such as AIX, CygWin,
# Darwin, MinGW, and NonStop.
#
# (3) This script is generated from the Groovy template
# https://github.com/gradle/gradle/blob/HEAD/platforms/jvm/plugins-application/src/main/resources/org/gradle/api/internal/plugins/unixStartScript.txt
# within the Gradle project.
#
# You can find Gradle at https://github.com/gradle/gradle/.
#
##############################################################################
# Attempt to set APP_HOME
# Resolve links: $0 may be a link
app_path=$0
# Need this for daisy-chained symlinks.
while
APP_HOME=${app_path%"${app_path##*/}"} # leaves a trailing /; empty if no leading path
[ -h "$app_path" ]
do
ls=$( ls -ld "$app_path" )
link=${ls#*' -> '}
case $link in #(
/*) app_path=$link ;; #(
*) app_path=$APP_HOME$link ;;
esac
done
# This is normally unused
# shellcheck disable=SC2034
APP_BASE_NAME=${0##*/}
# Discard cd standard output in case $CDPATH is set (https://github.com/gradle/gradle/issues/25036)
APP_HOME=$( cd -P "${APP_HOME:-./}" > /dev/null && printf '%s
' "$PWD" ) || exit
# Use the maximum available, or set MAX_FD != -1 to use that value.
MAX_FD=maximum
warn () {
echo "$*"
} >&2
die () {
echo
echo "$*"
echo
exit 1
} >&2
# OS specific support (must be 'true' or 'false').
cygwin=false
msys=false
darwin=false
nonstop=false
case "$( uname )" in #(
CYGWIN* ) cygwin=true ;; #(
Darwin* ) darwin=true ;; #(
MSYS* | MINGW* ) msys=true ;; #(
NONSTOP* ) nonstop=true ;;
esac
CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar
# Determine the Java command to use to start the JVM.
if [ -n "$JAVA_HOME" ] ; then
if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
# IBM's JDK on AIX uses strange locations for the executables
JAVACMD=$JAVA_HOME/jre/sh/java
else
JAVACMD=$JAVA_HOME/bin/java
fi
if [ ! -x "$JAVACMD" ] ; then
die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME
Please set the JAVA_HOME variable in your environment to match the
location of your Java installation."
fi
else
JAVACMD=java
if ! command -v java >/dev/null 2>&1
then
die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
Please set the JAVA_HOME variable in your environment to match the
location of your Java installation."
fi
fi
# Increase the maximum file descriptors if we can.
if ! "$cygwin" && ! "$darwin" && ! "$nonstop" ; then
case $MAX_FD in #(
max*)
# In POSIX sh, ulimit -H is undefined. That's why the result is checked to see if it worked.
# shellcheck disable=SC2039,SC3045
MAX_FD=$( ulimit -H -n ) ||
warn "Could not query maximum file descriptor limit"
esac
case $MAX_FD in #(
'' | soft) :;; #(
*)
# In POSIX sh, ulimit -n is undefined. That's why the result is checked to see if it worked.
# shellcheck disable=SC2039,SC3045
ulimit -n "$MAX_FD" ||
warn "Could not set maximum file descriptor limit to $MAX_FD"
esac
fi
# Collect all arguments for the java command, stacking in reverse order:
# * args from the command line
# * the main class name
# * -classpath
# * -D...appname settings
# * --module-path (only if needed)
# * DEFAULT_JVM_OPTS, JAVA_OPTS, and GRADLE_OPTS environment variables.
# For Cygwin or MSYS, switch paths to Windows format before running java
if "$cygwin" || "$msys" ; then
APP_HOME=$( cygpath --path --mixed "$APP_HOME" )
CLASSPATH=$( cygpath --path --mixed "$CLASSPATH" )
JAVACMD=$( cygpath --unix "$JAVACMD" )
# Now convert the arguments - kludge to limit ourselves to /bin/sh
for arg do
if
case $arg in #(
-*) false ;; # don't mess with options #(
/?*) t=${arg#/} t=/${t%%/*} # looks like a POSIX filepath
[ -e "$t" ] ;; #(
*) false ;;
esac
then
arg=$( cygpath --path --ignore --mixed "$arg" )
fi
# Roll the args list around exactly as many times as the number of
# args, so each arg winds up back in the position where it started, but
# possibly modified.
#
# NB: a `for` loop captures its iteration list before it begins, so
# changing the positional parameters here affects neither the number of
# iterations, nor the values presented in `arg`.
shift # remove old arg
set -- "$@" "$arg" # push replacement arg
done
fi
# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
# Collect all arguments for the java command:
# * DEFAULT_JVM_OPTS, JAVA_OPTS, JAVA_OPTS, and optsEnvironmentVar are not allowed to contain shell fragments,
# and any embedded shellness will be escaped.
# * For example: A user cannot expect ${Hostname} to be expanded, as it is an environment variable and will be
# treated as '${Hostname}' itself on the command line.
set -- \
"-Dorg.gradle.appname=$APP_BASE_NAME" \
-classpath "$CLASSPATH" \
org.gradle.wrapper.GradleWrapperMain \
"$@"
# Stop when "xargs" is not available.
if ! command -v xargs >/dev/null 2>&1
then
die "xargs is not available"
fi
# Use "xargs" to parse quoted args.
#
# With -n1 it outputs one arg per line, with the quotes and backslashes removed.
#
# In Bash we could simply go:
#
# readarray ARGS < <( xargs -n1 <<<"$var" ) &&
# set -- "${ARGS[@]}" "$@"
#
# but POSIX shell has neither arrays nor command substitution, so instead we
# post-process each arg (as a line of input to sed) to backslash-escape any
# character that might be a shell metacharacter, then use eval to reverse
# that process (while maintaining the separation between arguments), and wrap
# the whole thing up as a single "set" statement.
#
# This will of course break if any of these variables contains a newline or
# an unmatched quote.
#
eval "set -- $(
printf '%s\n' "$DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS" |
xargs -n1 |
sed ' s~[^-[:alnum:]+,./:=@_]~\\&~g; ' |
tr '\n' ' '
)" '"$@"'
exec "$JAVACMD" "$@"

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@rem
@rem Copyright 2015 the original author or authors.
@rem
@rem Licensed under the Apache License, Version 2.0 (the "License");
@rem you may not use this file except in compliance with the License.
@rem You may obtain a copy of the License at
@rem
@rem https://www.apache.org/licenses/LICENSE-2.0
@rem
@rem Unless required by applicable law or agreed to in writing, software
@rem distributed under the License is distributed on an "AS IS" BASIS,
@rem WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
@rem See the License for the specific language governing permissions and
@rem limitations under the License.
@rem
@rem SPDX-License-Identifier: Apache-2.0
@rem
@if "%DEBUG%"=="" @echo off
@rem ##########################################################################
@rem
@rem Gradle startup script for Windows
@rem
@rem ##########################################################################
@rem Set local scope for the variables with windows NT shell
if "%OS%"=="Windows_NT" setlocal
set DIRNAME=%~dp0
if "%DIRNAME%"=="" set DIRNAME=.
@rem This is normally unused
set APP_BASE_NAME=%~n0
set APP_HOME=%DIRNAME%
@rem Resolve any "." and ".." in APP_HOME to make it shorter.
for %%i in ("%APP_HOME%") do set APP_HOME=%%~fi
@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
set DEFAULT_JVM_OPTS="-Xmx64m" "-Xms64m"
@rem Find java.exe
if defined JAVA_HOME goto findJavaFromJavaHome
set JAVA_EXE=java.exe
%JAVA_EXE% -version >NUL 2>&1
if %ERRORLEVEL% equ 0 goto execute
echo. 1>&2
echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH. 1>&2
echo. 1>&2
echo Please set the JAVA_HOME variable in your environment to match the 1>&2
echo location of your Java installation. 1>&2
goto fail
:findJavaFromJavaHome
set JAVA_HOME=%JAVA_HOME:"=%
set JAVA_EXE=%JAVA_HOME%/bin/java.exe
if exist "%JAVA_EXE%" goto execute
echo. 1>&2
echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME% 1>&2
echo. 1>&2
echo Please set the JAVA_HOME variable in your environment to match the 1>&2
echo location of your Java installation. 1>&2
goto fail
:execute
@rem Setup the command line
set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar
@rem Execute Gradle
"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %*
:end
@rem End local scope for the variables with windows NT shell
if %ERRORLEVEL% equ 0 goto mainEnd
:fail
rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of
rem the _cmd.exe /c_ return code!
set EXIT_CODE=%ERRORLEVEL%
if %EXIT_CODE% equ 0 set EXIT_CODE=1
if not ""=="%GRADLE_EXIT_CONSOLE%" exit %EXIT_CODE%
exit /b %EXIT_CODE%
:mainEnd
if "%OS%"=="Windows_NT" endlocal
:omega

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Place onkostar-api.jar here

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rootProject.name = 'mv64e-onkostar-export'

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package dev.pcvolkmer.onco.dnpmexport;
import de.itc.onkostar.api.Disease;
import de.itc.onkostar.api.IOnkostarApi;
import de.itc.onkostar.api.Procedure;
import de.itc.onkostar.api.analysis.AnalyzerRequirement;
import de.itc.onkostar.api.analysis.IProcedureAnalyzer;
import de.itc.onkostar.api.analysis.OnkostarPluginType;
import dev.pcvolkmer.onco.datamapper.mapper.MtbDataMapper;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.stereotype.Component;
import javax.sql.DataSource;
/**
* Analyzer to start export if DNPM Klinik/Anamnese or DNPM Therapieplan form gets locked
*
* @author Paul-Christian Volkmer
* @since 0.1
*/
@Component
public class ExportAnalyzer implements IProcedureAnalyzer {
private static final Logger logger = LoggerFactory.getLogger(ExportAnalyzer.class);
private final IOnkostarApi onkostarApi;
private final MtbDataMapper mtbDataMapper;
public ExportAnalyzer(final IOnkostarApi onkostarApi, final DataSource dataSource) {
this.onkostarApi = onkostarApi;
// Reuse default Onkostar DataSource for MtbDataMapper
this.mtbDataMapper = MtbDataMapper.create(dataSource);
}
@Override
public OnkostarPluginType getType() {
return OnkostarPluginType.ANALYZER;
}
@Override
public String getVersion() {
return "0.1.0";
}
@Override
public String getName() {
return "DNPM-Export-Plugin";
}
@Override
public String getDescription() {
return "OS Export-Plugin für das DNPM-Datenmodell 2.1";
}
@Override
public boolean isSynchronous() {
return false;
}
@Override
public AnalyzerRequirement getRequirement() {
return AnalyzerRequirement.PROCEDURE;
}
@Override
public boolean isRelevantForDeletedProcedure() {
return false;
}
@Override
public boolean isRelevantForAnalyzer(final Procedure procedure, final Disease disease) {
return null != procedure
&& ("DNPM Klinik/Anamnese".equals(procedure.getFormName()) || "DNPM Therapieplan".equals(procedure.getFormName()));
}
@Override
public void analyze(final Procedure procedure, final Disease disease) {
logger.info("Starting export for procedure {}", procedure.getId());
try {
String caseId = "";
switch (procedure.getFormName()) {
case "DNPM Klinik/Anamnese":
caseId = procedure.getValue("FallnummrMV").getString();
break;
case "DNPM Therapieplan":
var kpaProcedure = onkostarApi.getProcedure(
procedure.getValue("ref_dnpm_klinikanamnese").getInt()
);
caseId = kpaProcedure.getValue("FallnummrMV").getString();
break;
default:
logger.info("Cannot handle procedure form {}", procedure.getFormName());
return;
}
var mtb = mtbDataMapper.getByCaseId(caseId);
// TODO: Send MTB data to remote application
} catch (Exception e) {
logger.error("Could export mtb data for procedure {}", procedure.getId(), e);
}
}
}

10
src/main/resources/de/itc/onkostar/library/moduleContext.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans"
xmlns:context="http://www.springframework.org/schema/context"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.1.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.1.xsd">
<context:component-scan base-package="dev.pcvolkmer.onco.dnpmexport" />
</beans>

1
src/main/resources/onkostar-config.properties Normal file
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onkostar-api=2.14.1

34
src/test/java/dev/pcvolkmer/onco/dnpmexport/ExportAnalyzerTest.java Normal file
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package dev.pcvolkmer.onco.dnpmexport;
import de.itc.onkostar.api.IOnkostarApi;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
import org.mockito.Mock;
import org.mockito.junit.jupiter.MockitoExtension;
import javax.sql.DataSource;
@ExtendWith(MockitoExtension.class)
class ExportAnalyzerTest {
private IOnkostarApi onkostarApi;
private DataSource dataSource;
private ExportAnalyzer analyzer;
@BeforeEach
void setup(
@Mock IOnkostarApi onkostarApi,
@Mock DataSource dataSource
) {
this.onkostarApi = onkostarApi;
this.dataSource = dataSource;
this.analyzer = new ExportAnalyzer(onkostarApi, dataSource);
}
@Test
void testShouldTestSomeAnalyzerImplementation() {
// Implement your first test
}
}