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Code Issues Activity

Issue #28: Erweitere Text für Ergebnis, Exon und Pathogenitätsklasse

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closes #28
This commit is contained in:
Paul-Christian Volkmer
2023-05-09 14:08:33 +02:00
parent b4c836f7ed
commit 2da02d1cf3
2 changed files with 16 additions and 16 deletions
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26
src/main/java/DNPM/dto/Variant.java
View File

@ -50,7 +50,7 @@ public class Variant {
} }
public static Optional<Variant> fromProcedure(Procedure procedure) { public static Optional<Variant> fromProcedure(Procedure procedure) {
if (! "OS.Molekulargenetische Untersuchung".equals(procedure.getFormName())) { if (!"OS.Molekulargenetische Untersuchung".equals(procedure.getFormName())) {
return Optional.empty(); return Optional.empty();
} }
@ -67,30 +67,30 @@ public class Variant {
return Optional.of( return Optional.of(
new Variant( new Variant(
procedure.getId(), procedure.getId(),
"Einfache Variante", "Einfache Variante (Mutation)",
gene.getString(), gene.getString().isBlank() ? "-" : gene.getString(),
exon.getString(), null == exon || exon.getString().isBlank() ? "-" : exon.getString(),
pathogenitaetsklasse.getString() null == pathogenitaetsklasse || pathogenitaetsklasse.getString().isBlank() ? "-" : pathogenitaetsklasse.getString()
) )
); );
} else if (ergebnis.getString().equals("CNV")) { } else if (ergebnis.getString().equals("CNV")) {
return Optional.of( return Optional.of(
new Variant( new Variant(
procedure.getId(), procedure.getId(),
"Copy Number Variation", "Copy Number Variation (CNV)",
gene.getString(), gene.getString().isBlank() ? "-" : gene.getString(),
exon.getString(), null == exon || exon.getString().isBlank() ? "-" : exon.getString(),
pathogenitaetsklasse.getString() null == pathogenitaetsklasse || pathogenitaetsklasse.getString().isBlank() ? "-" : pathogenitaetsklasse.getString()
) )
); );
} else if (ergebnis.getString().equals("F")) { } else if (ergebnis.getString().equals("F")) {
return Optional.of( return Optional.of(
new Variant( new Variant(
procedure.getId(), procedure.getId(),
"Fusion", "Fusion (Translokation Inversion Insertion)",
gene.getString(), gene.getString().isBlank() ? "-" : gene.getString(),
exon.getString(), null == exon || exon.getString().isBlank() ? "-" : exon.getString(),
pathogenitaetsklasse.getString() null == pathogenitaetsklasse || pathogenitaetsklasse.getString().isBlank() ? "-" : pathogenitaetsklasse.getString()
) )
); );
} else { } else {

6
src/test/java/DNPM/dto/VariantTest.java
View File

@ -23,7 +23,7 @@ public class VariantTest {
assertThat(actual).isPresent(); assertThat(actual).isPresent();
assertThat(actual.get().getId()).isEqualTo(12345); assertThat(actual.get().getId()).isEqualTo(12345);
assertThat(actual.get().getErgebnis()).isEqualTo("Einfache Variante"); assertThat(actual.get().getErgebnis()).isEqualTo("Einfache Variante (Mutation)");
assertThat(actual.get().getGen()).isEqualTo("BRAF"); assertThat(actual.get().getGen()).isEqualTo("BRAF");
assertThat(actual.get().getExon()).isEqualTo("123"); assertThat(actual.get().getExon()).isEqualTo("123");
assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2"); assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2");
@ -44,7 +44,7 @@ public class VariantTest {
assertThat(actual).isPresent(); assertThat(actual).isPresent();
assertThat(actual.get().getId()).isEqualTo(12345); assertThat(actual.get().getId()).isEqualTo(12345);
assertThat(actual.get().getErgebnis()).isEqualTo("Copy Number Variation"); assertThat(actual.get().getErgebnis()).isEqualTo("Copy Number Variation (CNV)");
assertThat(actual.get().getGen()).isEqualTo("BRAF"); assertThat(actual.get().getGen()).isEqualTo("BRAF");
assertThat(actual.get().getExon()).isEqualTo("123"); assertThat(actual.get().getExon()).isEqualTo("123");
assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2"); assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2");
@ -65,7 +65,7 @@ public class VariantTest {
assertThat(actual).isPresent(); assertThat(actual).isPresent();
assertThat(actual.get().getId()).isEqualTo(12345); assertThat(actual.get().getId()).isEqualTo(12345);
assertThat(actual.get().getErgebnis()).isEqualTo("Fusion"); assertThat(actual.get().getErgebnis()).isEqualTo("Fusion (Translokation Inversion Insertion)");
assertThat(actual.get().getGen()).isEqualTo("BRAF"); assertThat(actual.get().getGen()).isEqualTo("BRAF");
assertThat(actual.get().getExon()).isEqualTo("123"); assertThat(actual.get().getExon()).isEqualTo("123");
assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2"); assertThat(actual.get().getPathogenitaetsklasse()).isEqualTo("2");