mirror of
https://github.com/pcvolkmer/onkostar-plugin-dnpm.git
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Issue #4: Verschiebe Backend-Methode in EinzelempfehlungAnalyzer
This commit is contained in:
@ -1,8 +1,10 @@
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package DNPM.analyzer;
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import DNPM.dto.Studie;
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import DNPM.dto.Variant;
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import DNPM.security.PermissionType;
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import DNPM.security.PersonPoolBasedPermissionEvaluator;
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import DNPM.services.StudienService;
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import DNPM.services.molekulargenetik.MolekulargenetikFormService;
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import de.itc.onkostar.api.Disease;
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import de.itc.onkostar.api.IOnkostarApi;
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@ -32,14 +34,18 @@ public class EinzelempfehlungAnalyzer implements IProcedureAnalyzer {
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private final MolekulargenetikFormService molekulargenetikFormService;
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private final StudienService studienService;
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private final PersonPoolBasedPermissionEvaluator permissionEvaluator;
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public EinzelempfehlungAnalyzer(
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final IOnkostarApi onkostarApi,
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final StudienService studienService,
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final MolekulargenetikFormService molekulargenetikFormService,
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final PersonPoolBasedPermissionEvaluator permissionEvaluator
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) {
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this.onkostarApi = onkostarApi;
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this.studienService = studienService;
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this.molekulargenetikFormService = molekulargenetikFormService;
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this.permissionEvaluator = permissionEvaluator;
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}
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@ -112,4 +118,32 @@ public class EinzelempfehlungAnalyzer implements IProcedureAnalyzer {
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}
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}
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/**
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* Übergibt alle Studien, deren (Kurz-)Beschreibung oder NCT-Nummer den übergebenen Eingabewert <code>q</code> enthält
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*
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* <p>Wurde der Eingabewert nicht angegeben oder ist leer, werden alle Studien übergeben.
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*
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* <p>Beispiel zur Nutzung in einem Formularscript
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* <pre>
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* executePluginMethod(
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* 'TherapieplanAnalyzer',
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* 'getStudien',
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* { q: 'NCT-12' },
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* (response) => console.log(response),
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* false
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* );
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* </pre>
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*
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* @param input Map mit Eingabewerten
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* @return Liste mit Studien
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*/
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public List<Studie> getStudien(Map<String, Object> input) {
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var query = AnalyzerUtils.getRequiredValue(input, "q", String.class);
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if (query.isEmpty() || query.get().isBlank()) {
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return studienService.findAll();
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}
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return studienService.findByQuery(query.get());
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}
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}
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@ -1,9 +1,7 @@
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package DNPM.analyzer;
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import DNPM.dto.Studie;
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import DNPM.security.DelegatingDataBasedPermissionEvaluator;
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import DNPM.security.PermissionType;
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import DNPM.services.StudienService;
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import DNPM.services.mtb.MtbService;
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import DNPM.services.therapieplan.TherapieplanServiceFactory;
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import de.itc.onkostar.api.Disease;
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@ -15,7 +13,6 @@ import de.itc.onkostar.api.analysis.OnkostarPluginType;
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import org.springframework.security.core.context.SecurityContextHolder;
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import org.springframework.stereotype.Component;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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@ -27,8 +24,6 @@ import java.util.Set;
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@Component
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public class TherapieplanAnalyzer implements IProcedureAnalyzer {
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private final StudienService studienService;
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private final TherapieplanServiceFactory therapieplanServiceFactory;
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private final MtbService mtbService;
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@ -36,12 +31,10 @@ public class TherapieplanAnalyzer implements IProcedureAnalyzer {
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private final DelegatingDataBasedPermissionEvaluator permissionEvaluator;
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public TherapieplanAnalyzer(
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final StudienService studienService,
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final TherapieplanServiceFactory therapieplanServiceFactory,
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final MtbService mtbService,
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final DelegatingDataBasedPermissionEvaluator permissionEvaluator
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) {
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this.studienService = studienService;
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this.therapieplanServiceFactory = therapieplanServiceFactory;
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this.mtbService = mtbService;
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this.permissionEvaluator = permissionEvaluator;
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@ -104,35 +97,6 @@ public class TherapieplanAnalyzer implements IProcedureAnalyzer {
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therapieplanServiceFactory.currentUsableInstance().updateRequiredMtbEntries(procedure);
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}
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/**
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* Übergibt alle Studien, deren (Kurz-)Beschreibung oder NCT-Nummer den übergebenen Eingabewert <code>q</code> enthält
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*
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* <p>Wurde der Eingabewert nicht angegeben oder ist leer, werden alle Studien übergeben.
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*
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* <p>Beispiel zur Nutzung in einem Formularscript
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* <pre>
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* executePluginMethod(
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* 'TherapieplanAnalyzer',
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* 'getStudien',
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* { q: 'NCT-12' },
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* (response) => console.log(response),
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* false
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* );
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* </pre>
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*
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* @param input Map mit Eingabewerten
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* @return Liste mit Studien
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*/
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public List<Studie> getStudien(Map<String, Object> input) {
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var query = AnalyzerUtils.getRequiredValue(input, "q", String.class);
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if (query.isEmpty() || query.get().isBlank()) {
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return studienService.findAll();
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}
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return studienService.findByQuery(query.get());
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}
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/**
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* Übergibt den Text der referenzierten MTBs für den Protokollauszug
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*
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@ -2,17 +2,21 @@ package DNPM.analyzer;
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import DNPM.security.PermissionType;
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import DNPM.security.PersonPoolBasedPermissionEvaluator;
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import DNPM.services.StudienService;
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import DNPM.services.molekulargenetik.MolekulargenetikFormService;
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import de.itc.onkostar.api.IOnkostarApi;
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import de.itc.onkostar.api.Procedure;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Test;
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import org.junit.jupiter.api.extension.ExtendWith;
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import org.mockito.ArgumentCaptor;
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import org.mockito.Mock;
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import org.mockito.junit.jupiter.MockitoExtension;
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import java.util.HashMap;
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import java.util.Map;
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import static org.assertj.core.api.Assertions.assertThat;
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import static org.mockito.ArgumentMatchers.any;
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import static org.mockito.Mockito.*;
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@ -21,6 +25,8 @@ class EinzelempfehlungAnalyzerTest {
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private IOnkostarApi onkostarApi;
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private StudienService studienService;
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private MolekulargenetikFormService molekulargenetikFormService;
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private PersonPoolBasedPermissionEvaluator permissionEvaluator;
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@ -30,13 +36,15 @@ class EinzelempfehlungAnalyzerTest {
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@BeforeEach
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void setup(
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@Mock IOnkostarApi onkostarApi,
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@Mock StudienService studienService,
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@Mock MolekulargenetikFormService molekulargenetikFormService,
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@Mock PersonPoolBasedPermissionEvaluator permissionEvaluator
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) {
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this.onkostarApi = onkostarApi;
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this.studienService = studienService;
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this.molekulargenetikFormService = molekulargenetikFormService;
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this.permissionEvaluator = permissionEvaluator;
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this.analyzer = new EinzelempfehlungAnalyzer(onkostarApi, molekulargenetikFormService, permissionEvaluator);
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this.analyzer = new EinzelempfehlungAnalyzer(onkostarApi, studienService, molekulargenetikFormService, permissionEvaluator);
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}
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@Test
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@ -49,4 +57,30 @@ class EinzelempfehlungAnalyzerTest {
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verify(molekulargenetikFormService, times(1)).getVariants(any(Procedure.class));
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}
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@Test
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void shouldRequestAllStudienForEmptyQueryString() {
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var input = Map.of("q", (Object) " ");
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this.analyzer.getStudien(input);
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verify(studienService, times(1)).findAll();
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}
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@Test
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void shouldRequestAllStudienForEmptyInputMap() {
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var input = new HashMap<String, Object>();
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this.analyzer.getStudien(input);
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verify(studienService, times(1)).findAll();
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}
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@Test
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void shouldRequestFilteredStudien() {
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var input = Map.of("q", (Object) "NCT-123");
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this.analyzer.getStudien(input);
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var captor = ArgumentCaptor.forClass(String.class);
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verify(studienService, times(1)).findByQuery(captor.capture());
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assertThat(captor.getValue()).isEqualTo("NCT-123");
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}
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}
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@ -2,7 +2,7 @@ package DNPM.analyzer;
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import DNPM.security.DelegatingDataBasedPermissionEvaluator;
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import DNPM.security.PermissionType;
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import DNPM.services.*;
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import DNPM.services.FormService;
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import DNPM.services.mtb.MtbService;
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import DNPM.services.therapieplan.MultipleMtbTherapieplanService;
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import DNPM.services.therapieplan.TherapieplanService;
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@ -17,7 +17,6 @@ import org.mockito.ArgumentCaptor;
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import org.mockito.Mock;
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import org.mockito.junit.jupiter.MockitoExtension;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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@ -33,9 +32,6 @@ class TherapieplanAnalyzerTest {
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@Mock
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private FormService formService;
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@Mock
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private StudienService studienService;
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@Mock
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private TherapieplanServiceFactory therapieplanServiceFactory;
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@ -52,7 +48,7 @@ class TherapieplanAnalyzerTest {
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@BeforeEach
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void setUp() {
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this.therapieplanAnalyzer = new TherapieplanAnalyzer(studienService, therapieplanServiceFactory, mtbService, permissionEvaluator);
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this.therapieplanAnalyzer = new TherapieplanAnalyzer(therapieplanServiceFactory, mtbService, permissionEvaluator);
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}
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@Test
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@ -65,32 +61,6 @@ class TherapieplanAnalyzerTest {
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verify(this.therapieplanServiceFactory, times(1)).currentUsableInstance();
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}
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@Test
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void shouldRequestAllStudienForEmptyQueryString() {
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var input = Map.of("q", (Object) " ");
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this.therapieplanAnalyzer.getStudien(input);
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verify(studienService, times(1)).findAll();
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}
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@Test
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void shouldRequestAllStudienForEmptyInputMap() {
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var input = new HashMap<String, Object>();
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this.therapieplanAnalyzer.getStudien(input);
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verify(studienService, times(1)).findAll();
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}
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@Test
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void shouldRequestFilteredStudien() {
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var input = Map.of("q", (Object) "NCT-123");
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this.therapieplanAnalyzer.getStudien(input);
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var captor = ArgumentCaptor.forClass(String.class);
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verify(studienService, times(1)).findByQuery(captor.capture());
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assertThat(captor.getValue()).isEqualTo("NCT-123");
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}
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@Test
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void shouldRequestProtokollauszug() {
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doAnswer(invocationOnMock -> {
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