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mirror of https://github.com/pcvolkmer/onkostar-plugin-dnpm.git synced 2025-07-01 17:02:53 +00:00

Issue #4: Verschiebe Backend-Methode in EinzelempfehlungAnalyzer

This commit is contained in:
2023-06-27 11:31:08 +02:00
parent 0dc733a75b
commit b1f281fa59
4 changed files with 71 additions and 69 deletions

View File

@ -1,8 +1,10 @@
package DNPM.analyzer;
import DNPM.dto.Studie;
import DNPM.dto.Variant;
import DNPM.security.PermissionType;
import DNPM.security.PersonPoolBasedPermissionEvaluator;
import DNPM.services.StudienService;
import DNPM.services.molekulargenetik.MolekulargenetikFormService;
import de.itc.onkostar.api.Disease;
import de.itc.onkostar.api.IOnkostarApi;
@ -32,14 +34,18 @@ public class EinzelempfehlungAnalyzer implements IProcedureAnalyzer {
private final MolekulargenetikFormService molekulargenetikFormService;
private final StudienService studienService;
private final PersonPoolBasedPermissionEvaluator permissionEvaluator;
public EinzelempfehlungAnalyzer(
final IOnkostarApi onkostarApi,
final StudienService studienService,
final MolekulargenetikFormService molekulargenetikFormService,
final PersonPoolBasedPermissionEvaluator permissionEvaluator
) {
this.onkostarApi = onkostarApi;
this.studienService = studienService;
this.molekulargenetikFormService = molekulargenetikFormService;
this.permissionEvaluator = permissionEvaluator;
}
@ -112,4 +118,32 @@ public class EinzelempfehlungAnalyzer implements IProcedureAnalyzer {
}
}
/**
* Übergibt alle Studien, deren (Kurz-)Beschreibung oder NCT-Nummer den übergebenen Eingabewert <code>q</code> enthält
*
* <p>Wurde der Eingabewert nicht angegeben oder ist leer, werden alle Studien übergeben.
*
* <p>Beispiel zur Nutzung in einem Formularscript
* <pre>
* executePluginMethod(
* 'TherapieplanAnalyzer',
* 'getStudien',
* { q: 'NCT-12' },
* (response) => console.log(response),
* false
* );
* </pre>
*
* @param input Map mit Eingabewerten
* @return Liste mit Studien
*/
public List<Studie> getStudien(Map<String, Object> input) {
var query = AnalyzerUtils.getRequiredValue(input, "q", String.class);
if (query.isEmpty() || query.get().isBlank()) {
return studienService.findAll();
}
return studienService.findByQuery(query.get());
}
}

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@ -1,9 +1,7 @@
package DNPM.analyzer;
import DNPM.dto.Studie;
import DNPM.security.DelegatingDataBasedPermissionEvaluator;
import DNPM.security.PermissionType;
import DNPM.services.StudienService;
import DNPM.services.mtb.MtbService;
import DNPM.services.therapieplan.TherapieplanServiceFactory;
import de.itc.onkostar.api.Disease;
@ -15,7 +13,6 @@ import de.itc.onkostar.api.analysis.OnkostarPluginType;
import org.springframework.security.core.context.SecurityContextHolder;
import org.springframework.stereotype.Component;
import java.util.List;
import java.util.Map;
import java.util.Set;
@ -27,8 +24,6 @@ import java.util.Set;
@Component
public class TherapieplanAnalyzer implements IProcedureAnalyzer {
private final StudienService studienService;
private final TherapieplanServiceFactory therapieplanServiceFactory;
private final MtbService mtbService;
@ -36,12 +31,10 @@ public class TherapieplanAnalyzer implements IProcedureAnalyzer {
private final DelegatingDataBasedPermissionEvaluator permissionEvaluator;
public TherapieplanAnalyzer(
final StudienService studienService,
final TherapieplanServiceFactory therapieplanServiceFactory,
final MtbService mtbService,
final DelegatingDataBasedPermissionEvaluator permissionEvaluator
) {
this.studienService = studienService;
this.therapieplanServiceFactory = therapieplanServiceFactory;
this.mtbService = mtbService;
this.permissionEvaluator = permissionEvaluator;
@ -104,35 +97,6 @@ public class TherapieplanAnalyzer implements IProcedureAnalyzer {
therapieplanServiceFactory.currentUsableInstance().updateRequiredMtbEntries(procedure);
}
/**
* Übergibt alle Studien, deren (Kurz-)Beschreibung oder NCT-Nummer den übergebenen Eingabewert <code>q</code> enthält
*
* <p>Wurde der Eingabewert nicht angegeben oder ist leer, werden alle Studien übergeben.
*
* <p>Beispiel zur Nutzung in einem Formularscript
* <pre>
* executePluginMethod(
* 'TherapieplanAnalyzer',
* 'getStudien',
* { q: 'NCT-12' },
* (response) => console.log(response),
* false
* );
* </pre>
*
* @param input Map mit Eingabewerten
* @return Liste mit Studien
*/
public List<Studie> getStudien(Map<String, Object> input) {
var query = AnalyzerUtils.getRequiredValue(input, "q", String.class);
if (query.isEmpty() || query.get().isBlank()) {
return studienService.findAll();
}
return studienService.findByQuery(query.get());
}
/**
* Übergibt den Text der referenzierten MTBs für den Protokollauszug
*

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@ -2,17 +2,21 @@ package DNPM.analyzer;
import DNPM.security.PermissionType;
import DNPM.security.PersonPoolBasedPermissionEvaluator;
import DNPM.services.StudienService;
import DNPM.services.molekulargenetik.MolekulargenetikFormService;
import de.itc.onkostar.api.IOnkostarApi;
import de.itc.onkostar.api.Procedure;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
import org.mockito.ArgumentCaptor;
import org.mockito.Mock;
import org.mockito.junit.jupiter.MockitoExtension;
import java.util.HashMap;
import java.util.Map;
import static org.assertj.core.api.Assertions.assertThat;
import static org.mockito.ArgumentMatchers.any;
import static org.mockito.Mockito.*;
@ -21,6 +25,8 @@ class EinzelempfehlungAnalyzerTest {
private IOnkostarApi onkostarApi;
private StudienService studienService;
private MolekulargenetikFormService molekulargenetikFormService;
private PersonPoolBasedPermissionEvaluator permissionEvaluator;
@ -30,13 +36,15 @@ class EinzelempfehlungAnalyzerTest {
@BeforeEach
void setup(
@Mock IOnkostarApi onkostarApi,
@Mock StudienService studienService,
@Mock MolekulargenetikFormService molekulargenetikFormService,
@Mock PersonPoolBasedPermissionEvaluator permissionEvaluator
) {
this.onkostarApi = onkostarApi;
this.studienService = studienService;
this.molekulargenetikFormService = molekulargenetikFormService;
this.permissionEvaluator = permissionEvaluator;
this.analyzer = new EinzelempfehlungAnalyzer(onkostarApi, molekulargenetikFormService, permissionEvaluator);
this.analyzer = new EinzelempfehlungAnalyzer(onkostarApi, studienService, molekulargenetikFormService, permissionEvaluator);
}
@Test
@ -49,4 +57,30 @@ class EinzelempfehlungAnalyzerTest {
verify(molekulargenetikFormService, times(1)).getVariants(any(Procedure.class));
}
@Test
void shouldRequestAllStudienForEmptyQueryString() {
var input = Map.of("q", (Object) " ");
this.analyzer.getStudien(input);
verify(studienService, times(1)).findAll();
}
@Test
void shouldRequestAllStudienForEmptyInputMap() {
var input = new HashMap<String, Object>();
this.analyzer.getStudien(input);
verify(studienService, times(1)).findAll();
}
@Test
void shouldRequestFilteredStudien() {
var input = Map.of("q", (Object) "NCT-123");
this.analyzer.getStudien(input);
var captor = ArgumentCaptor.forClass(String.class);
verify(studienService, times(1)).findByQuery(captor.capture());
assertThat(captor.getValue()).isEqualTo("NCT-123");
}
}

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@ -2,7 +2,7 @@ package DNPM.analyzer;
import DNPM.security.DelegatingDataBasedPermissionEvaluator;
import DNPM.security.PermissionType;
import DNPM.services.*;
import DNPM.services.FormService;
import DNPM.services.mtb.MtbService;
import DNPM.services.therapieplan.MultipleMtbTherapieplanService;
import DNPM.services.therapieplan.TherapieplanService;
@ -17,7 +17,6 @@ import org.mockito.ArgumentCaptor;
import org.mockito.Mock;
import org.mockito.junit.jupiter.MockitoExtension;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
@ -33,9 +32,6 @@ class TherapieplanAnalyzerTest {
@Mock
private FormService formService;
@Mock
private StudienService studienService;
@Mock
private TherapieplanServiceFactory therapieplanServiceFactory;
@ -52,7 +48,7 @@ class TherapieplanAnalyzerTest {
@BeforeEach
void setUp() {
this.therapieplanAnalyzer = new TherapieplanAnalyzer(studienService, therapieplanServiceFactory, mtbService, permissionEvaluator);
this.therapieplanAnalyzer = new TherapieplanAnalyzer(therapieplanServiceFactory, mtbService, permissionEvaluator);
}
@Test
@ -65,32 +61,6 @@ class TherapieplanAnalyzerTest {
verify(this.therapieplanServiceFactory, times(1)).currentUsableInstance();
}
@Test
void shouldRequestAllStudienForEmptyQueryString() {
var input = Map.of("q", (Object) " ");
this.therapieplanAnalyzer.getStudien(input);
verify(studienService, times(1)).findAll();
}
@Test
void shouldRequestAllStudienForEmptyInputMap() {
var input = new HashMap<String, Object>();
this.therapieplanAnalyzer.getStudien(input);
verify(studienService, times(1)).findAll();
}
@Test
void shouldRequestFilteredStudien() {
var input = Map.of("q", (Object) "NCT-123");
this.therapieplanAnalyzer.getStudien(input);
var captor = ArgumentCaptor.forClass(String.class);
verify(studienService, times(1)).findByQuery(captor.capture());
assertThat(captor.getValue()).isEqualTo("NCT-123");
}
@Test
void shouldRequestProtokollauszug() {
doAnswer(invocationOnMock -> {