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test: add tests to ensure patient id pseudonym
This uses fake MTBFile JSON as described here: https://ibmi-intra.cs.uni-tuebingen.de/display/ZPM/bwHC+REST+API
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/*
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* This file is part of ETL-Processor
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*
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* Copyright (c) 2023 Comprehensive Cancer Center Mainfranken, Datenintegrationszentrum Philipps-Universität Marburg and Contributors
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*
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* This program is free software: you can redistribute it and/or modify
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* it under the terms of the GNU Affero General Public License as published
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* by the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* This program is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU Affero General Public License for more details.
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*
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* You should have received a copy of the GNU Affero General Public License
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* along with this program. If not, see <https://www.gnu.org/licenses/>.
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*/
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package dev.dnpm.etl.processor.pseudonym
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import com.fasterxml.jackson.databind.ObjectMapper
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import de.ukw.ccc.bwhc.dto.MtbFile
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import org.assertj.core.api.Assertions.assertThat
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import org.junit.jupiter.api.Test
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import org.junit.jupiter.api.extension.ExtendWith
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import org.mockito.ArgumentMatchers
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import org.mockito.Mock
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import org.mockito.junit.jupiter.MockitoExtension
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import org.mockito.kotlin.doAnswer
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import org.mockito.kotlin.whenever
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import org.springframework.core.io.ClassPathResource
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const val FAKE_MTB_FILE_PATH = "fake_MTBFile.json"
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const val CLEAN_PATIENT_ID = "5dad2f0b-49c6-47d8-a952-7b9e9e0f7549"
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@ExtendWith(MockitoExtension::class)
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class ExtensionsTest {
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private fun fakeMtbFile(): MtbFile {
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val mtbFile = ClassPathResource(FAKE_MTB_FILE_PATH).inputStream
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return ObjectMapper().readValue(mtbFile, MtbFile::class.java)
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}
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private fun MtbFile.serialized(): String {
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return ObjectMapper().writeValueAsString(this)
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}
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@Test
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fun shouldNotContainCleanPatientId(@Mock pseudonymizeService: PseudonymizeService) {
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doAnswer {
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it.arguments[0]
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"PSEUDO-ID"
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}.whenever(pseudonymizeService).patientPseudonym(ArgumentMatchers.anyString())
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val mtbFile = fakeMtbFile()
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mtbFile.pseudonymizeWith(pseudonymizeService)
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assertThat(mtbFile.patient.id).isEqualTo("PSEUDO-ID")
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assertThat(mtbFile.serialized()).doesNotContain(CLEAN_PATIENT_ID)
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}
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}
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1
src/test/resources/fake_MTBFile.json
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1
src/test/resources/fake_MTBFile.json
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