fe927e65aa
chore: remove explicit kafka dependency version
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Spring Boot 3.6.1 uses Kafka 3.6.1 that mitigates
CVE-2023-34453, CVE-2023-34454, CVE-2023-34455, CVE-2023-43642
and new CVE-2023-44981 from version 3.6.0
2023-12-29 17:26:51 +01:00
add09c3f9c
chore: update spring boot to version 3.2.1
2023-12-29 17:06:47 +01:00
5eb969c36a
Bump version
2023-12-15 11:46:50 +01:00
3cc4f8c1a4
test: add tests to ensure patient id pseudonym
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This uses fake MTBFile JSON as described here:
https://ibmi-intra.cs.uni-tuebingen.de/display/ZPM/bwHC+REST+API
2023-12-14 12:56:36 +01:00
Niklas
707bc55ab6
fix: Replace the patient's id in more places ( #14 )
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This adds studyInclusionRequests and tumorMorphology.
2023-12-14 12:55:09 +01:00
d7949a7dce
test: expect sorted data quality report issues
2023-12-05 14:34:51 +01:00
f5999ff325
test: expect 3 issues with different severity
2023-12-05 14:31:43 +01:00
a62da60809
feat: sort data quality report items by severity
2023-12-05 14:24:53 +01:00
ced6609d9a
fix: add info severity to data quality report
2023-12-05 14:24:40 +01:00
8dee349c37
build: update to Spring Boot 3.2.0
2023-12-04 18:18:31 +01:00
3e45de56cf
feat: add page that shows transformation configuration
2023-12-04 17:35:44 +01:00
7f54efe034
docs: remove notice on how to setup kafka
2023-12-04 16:11:33 +01:00
effcdd811f
style: add colored table rows for requests
2023-12-04 16:11:02 +01:00
acf49a892e
chore: update Kotlin and dependency management plugin
2023-12-04 14:37:58 +01:00
284806d130
chore: update Spring Boot to version 3.1.6
2023-11-25 14:36:53 +01:00
cf2d338e13
test: add integration test for mtb file transformation
2023-11-25 14:33:02 +01:00
d5552b3ca4
chore: Update Kotlin version to 1.9.20
2023-11-21 08:31:18 +01:00
892c0dea8f
chore: Update Apache Kafka client library to version 3.6.0
2023-10-20 13:50:07 +02:00
0305e69e9e
chore: Update Spring Boot to version 3.1.5
2023-10-20 13:49:38 +02:00
1a913b2644
Issue #12 : Remove obsolete braces from transformation examples
2023-10-05 12:44:09 +02:00
0eee1908df
Merge pull request #13 from CCC-MF/issue_12
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Transformation of MTBFile data based on rules
2023-10-05 12:41:49 +02:00
ffea9343c8
Issue #12 : Change README.md to show transformation config names as env var
2023-10-05 12:36:37 +02:00
eb24995ed9
Issue #12 : Log transformation count applied on application start
2023-10-05 12:35:29 +02:00
4196664060
Issue #12 : Transform MTBFile objects by using transformation rules
2023-10-05 12:09:56 +02:00
2824951e5e
Issue #12 : Add information about transformation rules in README.md
2023-10-05 11:45:42 +02:00
1e1db1c4d9
Issue #12 : Add application config for transformation configuration
2023-10-05 11:37:10 +02:00
7440fe1e23
Issue #12 : Basic implementation of transformation service
2023-10-05 10:51:49 +02:00
3f5c5e28fa
chore: update Spring Boot dependencies
2023-09-26 09:27:21 +02:00
6397b2a019
chore: pump version to dev version snapshot
2023-09-26 09:27:21 +02:00
jlidke
bf8f87b261
fix: removed gaps system from GPAS pseudonym value. Also added clean up method, which will replace filename invalid characters witch '_'. ( #11 )
2023-09-04 15:41:22 +02:00
2f32834de0
Release 0.1.2
2023-08-30 13:45:06 +02:00
79709caa39
Merge remote-tracking branch 'origin/add-docker-build'
2023-08-30 13:29:06 +02:00
c52509054d
chore: Add kafka-clients dependency with fixed version to mitigate CVEs
...
This will use version 3.5.1 of kafka-clients dependency to prevent issues due to
CVE-2023-34453, CVE-2023-34454 and CVE-2023-34455
2023-08-30 13:26:05 +02:00
Jakub Lidke
8fd587c2a3
chore: remove unused HealthCheck.java
2023-08-30 11:54:44 +02:00
Jakub Lidke
edafe30a4b
chore: added log msg to GpasPseudonymGenerator
2023-08-30 11:51:08 +02:00
Jakub Lidke
e24be0d325
chore: cleanup deployment docker-compose.yaml and env-sample.env. added 'DNPM' prefix for better integration into productive environment.
2023-08-30 11:50:24 +02:00
5e93e834ad
Remove comment to use host alias
2023-08-30 10:24:48 +02:00
Jakub Lidke
5e5bd579fb
test: * added additional external host 'localhost', now we can connect without additional host alias. * added akhq to dev-compose.yml
2023-08-30 10:21:38 +02:00
a24f869c84
Update dependencies
2023-08-30 10:03:04 +02:00
Jakub Lidke
635985bfd1
chore: remove previous build via Dockerfile. Fix security issue: CVE-2023-34453, CVE-2023-34454, CVE-2023-34455, CVE-2022-1471
2023-08-28 14:27:28 +02:00
Jakub Lidke
25143745c4
chore: added deployment docker-compose.yaml and env-sample.env added.
2023-08-28 12:54:14 +02:00
Jakub Lidke
532254593f
test: * added additional external host 'localhost', now we can connect without additional host alias. * added akhq to dev-compose.yml
2023-08-28 12:47:09 +02:00
Jakub Lidke
01ff53ab23
chore: deployment environment has maria db entries
2023-08-25 13:42:07 +02:00
Jakub Lidke
9643c80cc5
build: locally build docker image has license entry,now
2023-08-25 13:39:42 +02:00
Jakub Lidke
aa40da4995
chore: dev kafka is available via localhost, now.
2023-08-25 13:11:10 +02:00
Jakub Lidke
da26b5a2c8
Merge branch 'master' into add-docker-build
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# Conflicts:
# README.md
# build.gradle.kts
2023-08-25 12:59:38 +02:00
Jakub Lidke
bbea48322f
chore: added deployment port mapping for monitoring access
2023-08-25 12:50:29 +02:00
Jakub Lidke
480f165c7b
chore: add deployment docker-compose.yaml and fitting env-sample.env file
2023-08-24 13:48:46 +02:00
Jakub Lidke
3d2c73ff8f
doc: gPas Version requirement added
2023-08-24 13:01:29 +02:00
9921e1e684
Throw PseudonymRequestFailed exception with error message
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This will throw an exception with error message describing what the error is instead of
having a more generic NoSuchElementException to be thrown if Optional.get() has no value
after calling findFirst() on an empty stream.
2023-08-19 11:45:21 +02:00
