pcvolkmer/mv64e-onkostar-data
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feat: add recommendationsMissingReason and noSequencingPerformedReason

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This commit is contained in:
Paul-Christian Volkmer
2025-06-28 15:32:40 +02:00
parent c88f36f2ab
commit 111b96ee50
2 changed files with 87 additions and 3 deletions
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35
src/main/java/dev/pcvolkmer/onco/datamapper/mapper/TherapieplanDataMapper.java
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@ -1,11 +1,14 @@
package dev.pcvolkmer.onco.datamapper.mapper;
import dev.pcvolkmer.mv64e.mtb.MtbCarePlan;
import dev.pcvolkmer.mv64e.mtb.*;
import dev.pcvolkmer.onco.datamapper.PropertyCatalogue;
import dev.pcvolkmer.onco.datamapper.datacatalogues.EinzelempfehlungCatalogue;
import dev.pcvolkmer.onco.datamapper.datacatalogues.TherapieplanCatalogue;
import java.io.IOException;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import static dev.pcvolkmer.onco.datamapper.mapper.MapperUtils.getPatientReference;
@ -59,7 +62,37 @@ public class TherapieplanDataMapper implements DataMapper<MtbCarePlan> {
builder.notes(List.of(therapieplanData.getString("protokollauszug")));
}
if (
null != therapieplanData.getString("status_begruendung")
&& therapieplanData.getString("status_begruendung").equals(MtbCarePlanRecommendationsMissingReasonCodingCode.NO_TARGET.toValue())
) {
builder.recommendationsMissingReason(
MtbCarePlanRecommendationsMissingReasonCoding.builder()
.code(MtbCarePlanRecommendationsMissingReasonCodingCode.NO_TARGET)
.build()
);
} else {
builder.noSequencingPerformedReason(
getCarePlanNoSequencingPerformedReasonCoding(therapieplanData.getString("status_begruendung"))
);
}
return builder.build();
}
private CarePlanNoSequencingPerformedReasonCoding getCarePlanNoSequencingPerformedReasonCoding(String value) {
if (value == null || !Arrays.stream(NoSequencingPerformedReasonCode.values()).map(NoSequencingPerformedReasonCode::toValue).collect(Collectors.toSet()).contains(value)) {
return null;
}
var resultBuilder = CarePlanNoSequencingPerformedReasonCoding.builder();
try {
resultBuilder.code(NoSequencingPerformedReasonCode.forValue(value));
} catch (IOException e) {
return null;
}
return resultBuilder.build();
}
}

55
src/test/java/dev/pcvolkmer/onco/datamapper/mapper/TherapieplanDataMapperTest.java
View File

@ -1,7 +1,6 @@
package dev.pcvolkmer.onco.datamapper.mapper;
import dev.pcvolkmer.mv64e.mtb.MtbCarePlan;
import dev.pcvolkmer.mv64e.mtb.Reference;
import dev.pcvolkmer.mv64e.mtb.*;
import dev.pcvolkmer.onco.datamapper.PropertyCatalogue;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import dev.pcvolkmer.onco.datamapper.datacatalogues.EinzelempfehlungCatalogue;
@ -75,4 +74,56 @@ class TherapieplanDataMapperTest {
assertThat(actual.getNotes().get(0)).isEqualTo("Das ist ein Protokollauszug");
}
@Test
void shouldSetRecommendationsMissingReason() {
final Map<String, Object> testData = Map.of(
"id", 1,
"patient_id", 42,
"status_begruendung", "no-target"
);
doAnswer(invocationOnMock -> ResultSet.from(testData))
.when(therapieplanCatalogue)
.getById(anyInt());
var actual = this.dataMapper.getById(1);
assertThat(actual).isInstanceOf(MtbCarePlan.class);
assertThat(actual.getId()).isEqualTo("1");
assertThat(actual.getRecommendationsMissingReason())
.isEqualTo(
MtbCarePlanRecommendationsMissingReasonCoding.builder()
.code(MtbCarePlanRecommendationsMissingReasonCodingCode.NO_TARGET)
.build()
);
assertThat(actual.getNoSequencingPerformedReason()).isNull();
}
@Test
void shouldSetNoSequencingPerformedReason() {
final Map<String, Object> testData = Map.of(
"id", 1,
"patient_id", 42,
"status_begruendung", "non-genetic-cause"
);
doAnswer(invocationOnMock -> ResultSet.from(testData))
.when(therapieplanCatalogue)
.getById(anyInt());
var actual = this.dataMapper.getById(1);
assertThat(actual).isInstanceOf(MtbCarePlan.class);
assertThat(actual.getId()).isEqualTo("1");
assertThat(actual.getRecommendationsMissingReason()).isNull();
assertThat(actual.getNoSequencingPerformedReason()).isEqualTo(
CarePlanNoSequencingPerformedReasonCoding.builder()
.code(NoSequencingPerformedReasonCode.NON_GENETIC_CAUSE)
.build()
);
}
}