feat: add recommendationsMissingReason and noSequencingPerformedReason

src/main/java/dev/pcvolkmer/onco/datamapper/mapper/TherapieplanDataMapper.java

@@ -1,11 +1,14 @@
 package dev.pcvolkmer.onco.datamapper.mapper;
 
-import dev.pcvolkmer.mv64e.mtb.MtbCarePlan;
+import dev.pcvolkmer.mv64e.mtb.*;
 import dev.pcvolkmer.onco.datamapper.PropertyCatalogue;
 import dev.pcvolkmer.onco.datamapper.datacatalogues.EinzelempfehlungCatalogue;
 import dev.pcvolkmer.onco.datamapper.datacatalogues.TherapieplanCatalogue;
 
+import java.io.IOException;
+import java.util.Arrays;
 import java.util.List;
+import java.util.stream.Collectors;
 
 import static dev.pcvolkmer.onco.datamapper.mapper.MapperUtils.getPatientReference;
 
@@ -59,7 +62,37 @@ public class TherapieplanDataMapper implements DataMapper<MtbCarePlan> {
             builder.notes(List.of(therapieplanData.getString("protokollauszug")));
         }
 
+        if (
+                null != therapieplanData.getString("status_begruendung")
+                        && therapieplanData.getString("status_begruendung").equals(MtbCarePlanRecommendationsMissingReasonCodingCode.NO_TARGET.toValue())
+        ) {
+            builder.recommendationsMissingReason(
+                    MtbCarePlanRecommendationsMissingReasonCoding.builder()
+                            .code(MtbCarePlanRecommendationsMissingReasonCodingCode.NO_TARGET)
+                            .build()
+            );
+        } else {
+            builder.noSequencingPerformedReason(
+                    getCarePlanNoSequencingPerformedReasonCoding(therapieplanData.getString("status_begruendung"))
+            );
+        }
+
         return builder.build();
     }
 
+    private CarePlanNoSequencingPerformedReasonCoding getCarePlanNoSequencingPerformedReasonCoding(String value) {
+        if (value == null || !Arrays.stream(NoSequencingPerformedReasonCode.values()).map(NoSequencingPerformedReasonCode::toValue).collect(Collectors.toSet()).contains(value)) {
+            return null;
+        }
+
+        var resultBuilder = CarePlanNoSequencingPerformedReasonCoding.builder();
+        try {
+            resultBuilder.code(NoSequencingPerformedReasonCode.forValue(value));
+        } catch (IOException e) {
+            return null;
+        }
+
+        return resultBuilder.build();
+    }
+
 }

src/test/java/dev/pcvolkmer/onco/datamapper/mapper/TherapieplanDataMapperTest.java

@@ -1,7 +1,6 @@
 package dev.pcvolkmer.onco.datamapper.mapper;
 
-import dev.pcvolkmer.mv64e.mtb.MtbCarePlan;
+import dev.pcvolkmer.mv64e.mtb.*;
-import dev.pcvolkmer.mv64e.mtb.Reference;
 import dev.pcvolkmer.onco.datamapper.PropertyCatalogue;
 import dev.pcvolkmer.onco.datamapper.ResultSet;
 import dev.pcvolkmer.onco.datamapper.datacatalogues.EinzelempfehlungCatalogue;
@@ -75,4 +74,56 @@ class TherapieplanDataMapperTest {
         assertThat(actual.getNotes().get(0)).isEqualTo("Das ist ein Protokollauszug");
     }
 
+    @Test
+    void shouldSetRecommendationsMissingReason() {
+        final Map<String, Object> testData = Map.of(
+                "id", 1,
+                "patient_id", 42,
+                "status_begruendung", "no-target"
+        );
+
+        doAnswer(invocationOnMock -> ResultSet.from(testData))
+                .when(therapieplanCatalogue)
+                .getById(anyInt());
+
+        var actual = this.dataMapper.getById(1);
+        assertThat(actual).isInstanceOf(MtbCarePlan.class);
+        assertThat(actual.getId()).isEqualTo("1");
+
+        assertThat(actual.getRecommendationsMissingReason())
+                .isEqualTo(
+                        MtbCarePlanRecommendationsMissingReasonCoding.builder()
+                                .code(MtbCarePlanRecommendationsMissingReasonCodingCode.NO_TARGET)
+                                .build()
+                );
+
+        assertThat(actual.getNoSequencingPerformedReason()).isNull();
+    }
+
+    @Test
+    void shouldSetNoSequencingPerformedReason() {
+        final Map<String, Object> testData = Map.of(
+                "id", 1,
+                "patient_id", 42,
+                "status_begruendung", "non-genetic-cause"
+        );
+
+        doAnswer(invocationOnMock -> ResultSet.from(testData))
+                .when(therapieplanCatalogue)
+                .getById(anyInt());
+
+        var actual = this.dataMapper.getById(1);
+        assertThat(actual).isInstanceOf(MtbCarePlan.class);
+        assertThat(actual.getId()).isEqualTo("1");
+
+        assertThat(actual.getRecommendationsMissingReason()).isNull();
+
+
+        assertThat(actual.getNoSequencingPerformedReason()).isEqualTo(
+                CarePlanNoSequencingPerformedReasonCoding.builder()
+                        .code(NoSequencingPerformedReasonCode.NON_GENETIC_CAUSE)
+                        .build()
+        );
+    }
+
 }