pcvolkmer/mv64e-onkostar-data
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feat: add therapielinie to Mtb data

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Paul-Christian Volkmer
2025-06-22 14:50:04 +02:00
parent 673d89f5e2
commit bd3b5aeda1
3 changed files with 95 additions and 28 deletions
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33
src/main/java/dev/pcvolkmer/onco/datamapper/mapper/KpaTherapielinieDataMapper.java
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@ -3,6 +3,7 @@ package dev.pcvolkmer.onco.datamapper.mapper;
import dev.pcvolkmer.mv64e.mtb.MtbSystemicTherapy;
import dev.pcvolkmer.mv64e.mtb.PeriodDate;
import dev.pcvolkmer.mv64e.mtb.Reference;
import dev.pcvolkmer.onco.datamapper.PropertyCatalogue;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import dev.pcvolkmer.onco.datamapper.datacatalogues.TherapielinieCatalogue;
@ -14,8 +15,8 @@ import dev.pcvolkmer.onco.datamapper.datacatalogues.TherapielinieCatalogue;
*/
public class KpaTherapielinieDataMapper extends AbstractKpaTherapieverlaufDataMapper<MtbSystemicTherapy> {
public KpaTherapielinieDataMapper(final TherapielinieCatalogue catalogue) {
super(catalogue);
public KpaTherapielinieDataMapper(final TherapielinieCatalogue catalogue, final PropertyCatalogue propertyCatalogue) {
super(catalogue, propertyCatalogue);
}
/**
@ -45,10 +46,30 @@ public class KpaTherapielinieDataMapper extends AbstractKpaTherapieverlaufDataMa
.basedOn(Reference.builder().id(diseases.get(0).getDiseaseId().toString()).build())
.recordedOn(resultSet.getDate("erfassungsdatum"))
.therapyLine(resultSet.getLong("therapielinie"))
.intent(getMtbTherapyIntentCoding(resultSet.getString("intention")))
.status(getTherapyStatusCoding(resultSet.getString("status")))
.statusReason(getMtbTherapyStatusReasonCoding(resultSet.getString("statusgrund")))
.period(PeriodDate.builder().start(resultSet.getDate("beginn")).end(resultSet.getDate("ende")).build())
.intent(
getMtbTherapyIntentCoding(
resultSet.getString("intention"),
resultSet.getInteger("intention_propcat_version")
)
)
.status(
getTherapyStatusCoding(
resultSet.getString("status"),
resultSet.getInteger("status_propcat_version")
)
)
.statusReason(
getMtbTherapyStatusReasonCoding(
resultSet.getString("statusgrund"),
resultSet.getInteger("statusgrund_propcat_version")
)
)
.period(
PeriodDate.builder()
.start(resultSet.getDate("beginn"))
.end(resultSet.getDate("ende"))
.build()
)
/* TODO JSON deserialisation */
//.medication()

10
src/main/java/dev/pcvolkmer/onco/datamapper/mapper/MtbDataMapper.java
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@ -66,7 +66,14 @@ public class MtbDataMapper implements DataMapper<Mtb> {
catalogueFactory.catalogue(TumorgradingCatalogue.class),
propertyCatalogue
);
var prozedurMapper = new KpaProzedurDataMapper(catalogueFactory.catalogue(ProzedurCatalogue.class));
var prozedurMapper = new KpaProzedurDataMapper(
catalogueFactory.catalogue(ProzedurCatalogue.class),
propertyCatalogue
);
var therapielinieMapper = new KpaTherapielinieDataMapper(
catalogueFactory.catalogue(TherapielinieCatalogue.class),
propertyCatalogue
);
var resultBuilder = Mtb.builder();
@ -79,6 +86,7 @@ public class MtbDataMapper implements DataMapper<Mtb> {
.patient(kpaPatient)
.diagnoses(List.of(diagnosisDataMapper.getById(kpaId)))
.guidelineProcedures(prozedurMapper.getByParentId(kpaId))
.guidelineTherapies(therapielinieMapper.getByParentId(kpaId))
;
} catch (DataAccessException e) {
logger.error("Error while getting Mtb.", e);

80
src/test/java/dev/pcvolkmer/onco/datamapper/mapper/KpaTherapielinieDataMapperTest.java
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@ -1,6 +1,7 @@
package dev.pcvolkmer.onco.datamapper.mapper;
import dev.pcvolkmer.mv64e.mtb.*;
import dev.pcvolkmer.onco.datamapper.PropertyCatalogue;
import dev.pcvolkmer.onco.datamapper.ResultSet;
import dev.pcvolkmer.onco.datamapper.datacatalogues.TherapielinieCatalogue;
import org.junit.jupiter.api.BeforeEach;
@ -24,13 +25,18 @@ import static org.mockito.Mockito.when;
class KpaTherapielinieDataMapperTest {
TherapielinieCatalogue catalogue;
PropertyCatalogue propertyCatalogue;
KpaTherapielinieDataMapper dataMapper;
@BeforeEach
void setUp(@Mock TherapielinieCatalogue catalogue) {
void setUp(
@Mock TherapielinieCatalogue catalogue,
@Mock PropertyCatalogue propertyCatalogue
) {
this.catalogue = catalogue;
this.dataMapper = new KpaTherapielinieDataMapper(catalogue);
this.propertyCatalogue = propertyCatalogue;
this.dataMapper = new KpaTherapielinieDataMapper(catalogue, propertyCatalogue);
}
@Test
@ -73,29 +79,61 @@ class KpaTherapielinieDataMapperTest {
.when(catalogue)
.getDiseases(anyInt());
doAnswer(invocationOnMock -> {
var testPropertyData = Map.of(
"S", new PropertyCatalogue.Entry("S", "Sonstiges", "Sonstiges"),
"stopped", new PropertyCatalogue.Entry("stopped", "Abgebrochen", "Abgebrochen"),
"patient-death", new PropertyCatalogue.Entry("patient-death", "Tod", "Tod")
);
var code = invocationOnMock.getArgument(0, String.class);
return testPropertyData.get(code);
}
).when(propertyCatalogue).getByCodeAndVersion(anyString(), anyInt());
var actualList = this.dataMapper.getByParentId(1);
assertThat(actualList).hasSize(1);
var actual = actualList.get(0);
assertThat(actual).isInstanceOf(MtbSystemicTherapy.class);
assertThat(actual.getId()).isEqualTo("1");
assertThat(actual.getPeriod()).isEqualTo(
PeriodDate.builder()
.start(Date.from(Instant.parse("2000-01-01T12:00:00Z")))
.end(Date.from(Instant.parse("2024-06-19T12:00:00Z")))
.build()
);
assertThat(actual.getRecordedOn()).isEqualTo(Date.from(Instant.parse("2024-06-19T12:00:00Z")));
assertThat(actual.getIntent()).isEqualTo(
MtbTherapyIntentCoding.builder().code(MtbTherapyIntentCodingCode.S).build()
);
assertThat(actual.getStatus()).isEqualTo(
TherapyStatusCoding.builder().code(TherapyStatusCodingCode.STOPPED).build()
);
assertThat(actual.getStatusReason()).isEqualTo(
MtbTherapyStatusReasonCoding.builder().code(MtbTherapyStatusReasonCodingCode.PATIENT_DEATH).build()
);
assertThat(actual.getTherapyLine()).isEqualTo(1);
assertThat(actual)
.isInstanceOf(MtbSystemicTherapy.class);
assertThat(actual.getId())
.isEqualTo("1");
assertThat(actual.getPeriod())
.isEqualTo(
PeriodDate.builder()
.start(Date.from(Instant.parse("2000-01-01T12:00:00Z")))
.end(Date.from(Instant.parse("2024-06-19T12:00:00Z")))
.build()
);
assertThat(actual.getRecordedOn())
.isEqualTo(Date.from(Instant.parse("2024-06-19T12:00:00Z")));
assertThat(actual.getIntent())
.isEqualTo(
MtbTherapyIntentCoding.builder()
.code(MtbTherapyIntentCodingCode.S)
.display("Sonstiges")
.system("dnpm-dip/therapy/intent")
.build()
);
assertThat(actual.getStatus())
.isEqualTo(
TherapyStatusCoding.builder()
.code(TherapyStatusCodingCode.STOPPED)
.display("Abgebrochen")
.system("dnpm-dip/therapy/status")
.build()
);
assertThat(actual.getStatusReason())
.isEqualTo(
MtbTherapyStatusReasonCoding.builder()
.code(MtbTherapyStatusReasonCodingCode.PATIENT_DEATH)
.display("Tod")
.system("dnpm-dip/therapy/status-reason")
.build()
);
assertThat(actual.getTherapyLine())
.isEqualTo(1);
}
}